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At least 667 records · Page 37

Different feeding patterns affect meat quality of Tibetan pigs associated with intestinal microbiota alterations

This study aimed to investigate the effects of different feeding patterns on meat quality, gut microbiota and its metabolites of Tibetan pigs. Tibetan pigs with similar body weight were fed the high energy diets ( HEP , 20 pigs) and the regular diets ( RFP , 20 pigs), and free-ranging Tibetan pigs ( FRP , 20 pigs) were selected as the reference. After 6 weeks of experiment, meat quality indexes of semitendinosus muscle ( SM ) and cecal microbiota were measured. The results of meat quality demonstrated that the shear force of pig SM in FRP group was higher than that in HEP and RFP groups ( p < 0.001); the pH-value of SM in HEP pigs was higher at 45 min ( p < 0.05) and lower at 24 h ( p < 0.01) after slaughter than that in FRP and RFP groups; the SM lightness ( L* value) of FRP pigs increased compared with RFP and HEP groups ( p < 0.001), while the SM redness ( a* value) of FRP pigs was higher than that of RFP group ( p < 0.05). The free fatty acid ( FA ) profile exhibited that the total FAs and unsaturated FAs of pig SM in HEP and RFP groups were higher than those in FRP group ( p < 0.05); the RFP pigs had more reasonable FA composition with higher n-3 polyunsaturated FAs ( PUFAs ) and lower n-6/n-3 PUFA ratio than HEP pigs ( p < 0.05). Based on that, we observed that Tibetan pigs fed high energy diets (HEP) had lower microbial α-diversity in cecum ( p < 0.05), and distinct feeding patterns exhibited a different microbial cluster. Simultaneously, the short-chain FA levels in cecum of FRP and RFP pigs were higher compared with HEP pigs ( p < 0.05). A total of 11 genera related to muscle lipid metabolism or meat quality, including Alistipes , Anaerovibrio , Acetitomaculun , etc., were identified under different feeding patterns ( p < 0.05). Spearman correlation analysis demonstrated that alterations of free FAs in SM were affected by the genera Prevotellaceae_NK3B31_group , Prevotellaceae UCG-003 and Christensenellaceae_R-7_group ( p < 0.05). Taken together, distinct feeding patterns affected meat quality of Tibetan pigs related to gut microbiota alterations.

Zhu, Yanbin↗

The Genetic Architecture of Nitrogen Use Efficiency in Switchgrass ( Panicum virgatum L.)

Switchgrass (Panicum virgatum L.) has immense potential as a bioenergy crop with the aim of producing biofuel as an end goal. Nitrogen (N)-related sustainability traits, such as nitrogen use efficiency (NUE) and nitrogen remobilization efficiency (NRE), are important factors affecting switchgrass quality and productivity. Hence, it is imperative to develop nitrogen use-efficient switchgrass accessions by exploring the genetic basis of NUE in switchgrass. For that, we used 331 diverse field-grown switchgrass accessions planted under low and moderate N fertility treatments. We performed a genome wide association study (GWAS) in a holistic manner where we not only considered NUE as a single trait but also used its related phenotypic traits, such as total dry biomass at low N and moderate N, and nitrogen use index, such as NRE. We have evaluated the phenotypic characterization of the NUE and the related traits, highlighted their relationship using correlation analysis, and identified the top ten nitrogen use-efficient switchgrass accessions. Our GWAS analysis identified 19 unique single nucleotide polymorphisms (SNPs) and 32 candidate genes. Two promising GWAS candidate genes, caffeoyl-CoA O-methyltransferase (CCoAOMT) and <alfin-like 6(AL6), were further supported by linkage disequilibrium (LD) analysis. Finally, we discussed the potential role of nitrogen in modulating the expression of these two genes. Our findings have opened avenues for the development of improved nitrogen use-efficient switchgrass lines.

59 BASIC BIOLOGICAL SCIENCES↗

Comparative Study of High-Resolution LysB29(Nε-myristoyl) des(B30) Insulin Structures Display Novel Dynamic Causal Interrelations in Monomeric-Dimeric Motions

The treatment of insulin-dependent diabetes mellitus is characterized by artificial supplementation of pancreatic β-cell ability to regulate sugar levels in the blood. Even though various insulin analogs are crucial for reasonable glycemic control, understanding the dynamic mechanism of the insulin analogs may help to improve the best-protracted insulin analog to assist people with type 1 diabetes (T1D) to live comfortably while maintaining tight glycemic control. Here, we present the high-resolution crystal structure of NN304, known as insulin detemir, to 1.7 Å resolution at cryogenic temperature. We computationally further investigated our crystal structure’s monomeric-dimeric conformation and dynamic profile by comparing it with a previously available detemir structure (PDB ID: 1XDA). Our structure (PDB ID: 8HGZ), obtained at elevated pH, provides electrostatically triggered minor movements in the equilibrium between alternate conformational substates compared to the previous structure, suggesting it might induce an intermediate state in the dissociation pathway of the insulin detemir’s hexamer:dihexamer equilibrium. Supplemented with orientational cross-correlation analysis by a Gaussian network model (GNM), this alternate oligomeric conformation offers the distinct cooperative motions originated by loose coupling of distant conformational substates of a protracted insulin analog that has not been previously observed.

59 BASIC BIOLOGICAL SCIENCES↗

SDSS J0159+0105: a radio-quiet quasar with a centi-parsec supermassive black hole binary candidate

We report a candidate centi-parsec supermassive black hole binary (SMBHB) in the radio-quiet quasar SDSS J0159+0105 at z = 0.217. With a modified Lomb–Scargle code (GLSdeDRW) and auto-correlation analysis, we detect two significant (at P > 99%) periodic signals at ∼741 day and ∼1500 day from the 8.1 yr Catalina V-band light curve of this quasar. The period ratio, which is close to 1:2, is typical of a black hole binary system with a mass ratio of 0.05 < q < 0.8 according to recent numerical simulations. SDSS J0159+0105 has two SDSS spectroscopic observations separated by ∼10 yr. There is a significant change in the broad Hβ profile between the two epochs, which can be explained by a single broad-line region (BLR) around the binary system illuminated by the aforementioned mini-disks, or a stream of gas flowing from the circumbinary disk to one of the SMBHs. From the single BLR assumption and the orbital period t {sub orb} ∼ 1500 day, we estimate the total virial masses of M {sub SMBHB} ∼ 1.3 × 10{sup 8} M {sub ⊙}, the average distances of BLR of ∼0.04 pc (∼50 lt-day, with ±0.3 dex uncertainty), and an SMBHB separation of d = (0.01 pc)M{sub 8,tot}{sup 1/3} (T {sub rest}/3.3 yr){sup 2/3} ∼ 0.013 pc (15 lt-day). Based on analytical work, the postulated circumbinary disk has an inner radius of 2d = 0.026 pc (30 lt-day). SDSS J0159+0105 also displays unusual spectral energy distribution. The unique properties of SDSS J0159+0105 are consistent with it being a centi-parsec SMBHB.

79 ASTRONOMY AND ASTROPHYSICS↗

A Significant Increase in Detection of High-resolution Emission Spectra Using a Three-dimensional Atmospheric Model of a Hot Jupiter

High-resolution spectroscopy has opened the way for new, detailed study of exoplanet atmospheres. There is evidence that this technique can be sensitive to the complex, three-dimensional (3D) atmospheric structure of these planets. In this work, we perform cross-correlation analysis of high-resolution (R ∼ 100,000) CRIRES/VLT emission spectra of the hot Jupiter HD 209458b. We generate template emission spectra from a 3D atmospheric circulation model of the planet, accounting for temperature structure and atmospheric motions—winds and planetary rotation—missed by spectra calculated from one-dimensional models. In this first-of-its-kind analysis, we find that using template spectra generated from a 3D model produces a more significant detection (6.9σ) of the planet’s signal than any of the hundreds of one-dimensional models we tested (maximum of 5.1σ). We recover the planet’s thermal emission, its orbital motion, and the presence of CO in its atmosphere at high significance. Additionally, we analyzed the relative influences of 3D temperature and chemical structures in this improved detection, including the contributions from CO and H{sub 2}O, as well as the role of atmospheric Doppler signatures from winds and rotation. This work shows that the hot Jupiter’s 3D atmospheric structure has a first-order influence on its emission spectra at high resolution and motivates the use of multidimensional atmospheric models in high-resolution spectral analysis.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Characterizing the Gamma-Ray Variability of the Brightest Flat Spectrum Radio Quasars Observed with the Fermi LAT

Almost 10 yr of γ-ray observations with the Fermi Large Area Telescope have revealed extreme γ-ray outbursts from flat spectrum radio quasars (FSRQs), temporarily making these objects the brightest γ-ray emitters in the sky. Yet, the location and mechanisms of the γ-ray emission remain elusive. We characterize long-term γ-ray variability and the brightest γ-ray flares of six FSRQs. Consecutively zooming in on the brightest flares, which we identify in an objective way through Bayesian blocks and a hill-climbing algorithm, we find variability on subhour timescales and as short as minutes for two sources in our sample (3C 279 and CTA 102) and weak evidence for variability at timescales less than the Fermi satellite's orbit of 95 minutes for PKS 1510–089 and 3C 454.3. This indicates extremely compact emission regions in the jet. We do not find any signs of γ-ray absorption in the broad-line region (BLR), which indicates that γ-rays are produced at distances greater than hundreds of gravitational radii from the central black hole. This is further supported by a cross-correlation analysis between γ-ray and radio/millimeter light curves, which is consistent with γ-ray production at the same location as the millimeter core for 3C 273, CTA 102, and 3C 454.3. The inferred locations of the γ-ray production zones are still consistent with the observed decay times of the brightest flares if the decay is caused by external Compton scattering with BLR photons. Yet, the minute-scale variability is challenging to explain in such scenarios.

79 ASTRONOMY AND ASTROPHYSICS↗

SDSS-IV MaNGA: Exploring the Local Scaling Relations for N/O

We present, for the first time, the relationship between local stellar mass surface density, Σ * , and N/O derived from SDSS-IV MaNGA data, using a sample of 792,765 high signal-to-noise ratio star-forming spaxels. Using a combination of phenomenological modeling and partial correlation analysis, we find that Σ * alone is insufficient to predict the N/O in MaNGA spaxels and that there is an additional dependence on the local star formation rate surface density, Σ SFR . This effect is a factor of 3 stronger than the dependence of 12+log(O/H) on Σ SFR . Surprisingly, we find that the local N/O scaling relations also depend on the total galaxy stellar mass at fixed Σ * and the galaxy size at fixed stellar mass. We find that more compact galaxies are more nitrogen rich, even when Σ * and Σ SFR are controlled for. We show that ~50% of the variance of N/O is explained by the total stellar mass and size. Thus, the evolution of nitrogen in galaxies is set by more than just local effects and does not simply track the buildup of oxygen in galaxies. The precise form of the N/O–O/H relation is therefore sensitive to the sample of galaxies from which it is derived. This result casts doubt on the universal applicability of nitrogen-based strong-line metallicity indicators derived in the local universe.

79 ASTRONOMY AND ASTROPHYSICS↗

The LSST AGN Data Challenge: Selection Methods

Abstract Development of the Rubin Observatory Legacy Survey of Space and Time (LSST) includes a series of Data Challenges (DCs) arranged by various LSST Scientific Collaborations that are taking place during the project's preoperational phase. The AGN Science Collaboration Data Challenge (AGNSC-DC) is a partial prototype of the expected LSST data on active galactic nuclei (AGNs), aimed at validating machine learning approaches for AGN selection and characterization in large surveys like LSST. The AGNSC-DC took place in 2021, focusing on accuracy, robustness, and scalability. The training and the blinded data sets were constructed to mimic the future LSST release catalogs using the data from the Sloan Digital Sky Survey Stripe 82 region and the XMM-Newton Large Scale Structure Survey region. Data features were divided into astrometry, photometry, color, morphology, redshift, and class label with the addition of variability features and images. We present the results of four submitted solutions to DCs using both classical and machine learning methods. We systematically test the performance of supervised models (support vector machine, random forest, extreme gradient boosting, artificial neural network, convolutional neural network) and unsupervised ones (deep embedding clustering) when applied to the problem of classifying/clustering sources as stars, galaxies, or AGNs. We obtained classification accuracy of 97.5% for supervised models and clustering accuracy of 96.0% for unsupervised ones and 95.0% with a classic approach for a blinded data set. We find that variability features significantly improve the accuracy of the trained models, and correlation analysis among different bands enables a fast and inexpensive first-order selection of quasar candidates.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

The correlation between Arctic sea ice, cloud phase and radiation using A-Train satellites

Abstract. Climate warming has a stronger impact on Arctic climate and sea ice cover (SIC) decline than previously thought. Better understanding and characterization of the relationship between sea ice and clouds and the implications for surface radiation is key to improving our confidence in Arctic climate projections. Here we analyze the relationship between sea ice, cloud phase and surface radiation over the Arctic, defined as north of 60° N, using active- and passive-sensor satellite observations from three different datasets. We find that all datasets agree on the climatology of and seasonal variability in total and liquid-bearing (liquid and mixed-phase) cloud covers. Similarly, our results show a robust relationship between decreased SIC and increased liquid-bearing clouds in the lowest levels (below 3 km) for all seasons (strongest in winter) but summer, while increased SIC and ice clouds are positively correlated in two of the three datasets. A refined map correlation analysis indicates that the relationship between SIC and liquid-bearing clouds can change sign over the Bering, Barents and Laptev seas, likely because of intrusions of warm air from low latitudes during winter and spring. Finally, the increase in liquid clouds resulting from decreasing SIC is associated with enhanced radiative cooling at the surface. Our findings indicate that the newly formed liquid clouds reflect more shortwave (SW) radiation back to space compared to the surface, generating a cooling effect of the surface, while their downward longwave (LW) radiation is similar to the upward LW surface emission, which has a negligible radiative impact on the surface. This overall cooling effect should contribute to dampening future Arctic surface warming as SIC continues to decline.

54 ENVIRONMENTAL SCIENCES↗

Measurement report: Role of organic coating and chemical composition on ice nucleation potential of atmospheric particles in European Arctic

Understanding the ice nucleation (IN) potential of Arctic aerosols is critical for predicting their influence on cloud formation and water cycles in this vulnerable region. This study investigates the role of particle composition, organic coatings, and aerosol sources in modulating ice nucleating particle (INPs) abundance across five aerosol samples collected at the Gruvebadet Observatory Station in Ny-Ålesund, Svalbard. The IN potential of Arctic aerosol particles was studied by investigating chemical, morphological, and INP abundance measurements. Single-particle analyses revealed distinct differences in mixing state, organic volume fraction (OVF), and organic coating morphology across samples. OVF distributions were linked to particle origin, with marine-influenced Na-rich particles often exhibiting thin organic coatings, while long-range transported particles showed thicker organic coatings. Biogenic contributions, though variable, were linked to heat-sensitive INPs, suggesting a role for labile biological macromolecules under certain meteorological conditions. Spearman rank correlation analysis between particle composition and immersion-mode INP concentrations at two freezing temperatures indicated that organic-rich and Na-rich particles were positively associated with enhanced INP abundance. However, discrepancies in INP abundance were observed for particles with thicker organic coatings, where the morphological configuration of the organic material may play a role. The results highlight that Arctic INP variability is governed not only by chemical composition but also by the morphological configuration of organic material, which can either enhance or inhibit ice nucleation depending on its abundance, distribution, thickness, and mixing state. These findings underscore the combined influence of source regions, atmospheric processing, and organic–inorganic interactions in shaping Arctic aerosol freezing behavior.

Lata, Nurun Nahar [Pacific Northwest National Labo↗

Temperature and precipitation signal in two Alpine ice cores over the period 1961&ndash;2001

Water stable isotope ratios and net snow accumulation in ice cores are commonly interpreted as temperature or precipitation proxies. However, only in a few cases has a direct calibration with instrumental data been attempted. In this study we took advantage of the dense network of observations in the European Alpine region to rigorously test the relationship of the annual and seasonal resolved proxy data from two highly resolved ice cores with local temperature and precipitation. We focused on the time period 1961–2001 with the highest amount and quality of meteorological data and the minimal uncertainty in ice core dating (±1 year). The two ice cores were retrieved from the Fiescherhorn glacier (northern Alps, 3900 m a.s.l.), and Grenzgletscher (southern Alps, 4200 m a.s.l.). A parallel core from the Fiescherhorn glacier allowed assessing the reproducibility of the ice core proxy data. Due to the orographic barrier, the two flanks of the Alpine chain are affected by distinct patterns of precipitation. The different location of the two glaciers therefore offers a unique opportunity to test whether such a specific setting is reflected in the proxy data. On a seasonal scale a high fraction of δ 18 O variability was explained by the seasonal cycle of temperature (~60% for the ice cores, ~70% for the nearby stations of the Global Network of Isotopes in Precipitation – GNIP). When the seasonality is removed, the correlations decrease for all sites, indicating that factors other than temperature such as changing moisture sources and/or precipitation regimes affect the isotopic signal on this timescale. Post-depositional phenomena may additionally modify the ice core data. On an annual scale, the δ 18 O/temperature relationship was significant at the Fiescherhorn, whereas for Grenzgletscher this was the case only when weighting the temperature with precipitation. In both cases the fraction of interannual temperature variability explained was ~20%, comparable to the values obtained from the GNIP stations data. Consistently with previous studies, we found an altitude effect for the δ 18 O of -0.17‰/100 m for an extended elevation range combining data of the two ice core sites and four GNIP stations. Significant correlations between net accumulation and precipitation were observed for Grenzgletscher during the entire period of investigation, whereas for Fiescherhorn this was the case only for the less recent period (1961–1977). Local phenomena, probably related to wind, seem to partly disturb the Fiescherhorn accumulation record. Spatial correlation analysis shows the two glaciers to be influenced by different precipitation regimes, with the Grenzgletscher reflecting the characteristic precipitation regime south of the Alps and the Fiescherhorn accumulation showing a pattern more closely linked to northern Alpine stations.

54 ENVIRONMENTAL SCIENCES↗

A global coupled Eulerian-Lagrangian model and 1 1 km CO2 surface flux dataset for high-resolution atmospheric CO2 transport simulations

Abstract. We designed a method to simulate atmospheric CO2 concentrations at several continuous observation sites around the globe using surface fluxes at a very high spatial resolution. The simulations presented in this study were performed using the Global Eulerian-Lagrangian Coupled Atmospheric model (GELCA), comprising a Lagrangian particle dispersion model coupled to a global atmospheric tracer transport model with prescribed global surface CO2 flux maps at a 1 1 km resolution. The surface fluxes used in the simulations were prepared by assembling the individual components of terrestrial, oceanic and fossil fuel CO2 fluxes. This experimental setup (i.e. a transport model running at a medium resolution, coupled to a high-resolution Lagrangian particle dispersion model together with global surface fluxes at a very high resolution), which was designed to represent high-frequency variations in atmospheric CO2 concentration, has not been reported at a global scale previously. Two sensitivity experiments were performed: (a) using the global transport model without coupling to the Lagrangian dispersion model, and (b) using the coupled model with a reduced resolution of surface fluxes, in order to evaluate the performance of Eulerian-Lagrangian coupling and the role of high-resolution fluxes in simulating high-frequency variations in atmospheric CO2 concentrations. A correlation analysis between observed and simulated atmospheric CO2 concentrations at selected locations revealed that the inclusion of both Eulerian-Lagrangian coupling and highresolution fluxes improves the high-frequency simulations of the model. The results highlight the potential of a coupled Eulerian-Lagrangian model in simulating high-frequency atmospheric CO2 concentrations at many locations worldwide. The model performs well in representing observations of atmospheric CO2 concentrations at high spatial and temporal resolutions, especially for coastal sites and sites located close to sources of large anthropogenic emissions. While this study focused on simulations of CO2 concentrations, the model could be used for other atmospheric compounds with known estimated emissions.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Causal relationships of vegetation productivity with root zone water availability and atmospheric dryness at the catchment scale

Abstract. This study explores the causal relationships between catchment water availability, vapor pressure deficit, and gross primary productivity (GPP) across 341 catchments in the contiguous US. Seasonal climatic, hydrological, and vegetation characteristics were represented using the Horton index, ecological aridity index, evaporative fraction index, and carbon uptake efficiency. Statistical methods, including circularity statistics, correlation analysis, and causality tests, were employed to determine the complex interactions between catchment wetness, atmospheric dryness, and vegetation carbon uptake. The results revealed a maximum lag of 2 months in the intra-annual variability of catchment water supply–productivity and atmospheric water demand–productivity relationships, with hysteresis patterns varying with the catchment's hydrological characteristics. In catchments not permanently under water-limited or energy-limited conditions, vegetation experiences hydrological stress during the peak growing period, coinciding with the highest gross primary productivity and carbon uptake efficiency being out of phase with the Horton index and in phase with the evaporative fraction index. Causality analysis highlights strong temporal continuity in GPP seasonal characteristics, with a cause–effect relationship between catchment water supply, atmospheric demand, and vegetation productivity spanning a maximum of 2 months. These findings underscore the need for a comprehensive functional framework that integrates catchment water supply, atmospheric demand, and vegetation productivity to enhance our understanding and predictive capabilities with regard to ecosystem responses to climate change.

54 ENVIRONMENTAL SCIENCES↗

Development of high temperature nickel-base alloys for jet engine turbine bucket applications

A program has been initiated to develop a material with superior properties at elevated temperatures for utilization in turbine blade applications. A nickel-base superalloy can provide the necessary high temperature strength by using the maximum capability of the three available strengthening mechanisms - intermetallic gamma prime precipitation (Ni3Al), solid solution strengthening with refractory and precious metals, and stable carbide formations through the addition of strong carbide forming elements. A stress rupture test at 2000 deg F and 15,000 psi was formulated to approximate the desired properties. By adding varying amounts of refractory metals (Mo, W and Ta) it was possible to statistically analyze the effects of each in a basic superalloy composition containing fixed amounts of Co, Cr, C, B, Sr, and Ni at three separate levels of AL and Ta. Metallographic analysis correlated with the mechanical properties of the alloys; those with few strengthening phases were weak and ductile and those with excessive amounts of intermetallic phases present in undesirable morphologies were brittle.

SUPERALLOY↗