SEARCH · Search NASA

Results for “crop model”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 667 records · Page 37

All sources NASA NTRS DOE OSTI

NASA NTRS1978

Applications of modeling to analysis and processing of Landsat data

The Suits bidirectional reflectance model (1972) for vegetation canopies was used to calculate reflectance values for the four Landsat spectral bands under a variety of canopy and observation conditions. Relationships between characteristics of developing wheat fields and associated reflectances were studied. Coincident measurements of crop reflectance and Landsat signals were compared using regression analysis techniques. The model was also applied to forest situations both to help establish the extent to which Landsat may provide direct information about conditions occurring beneath forest overstories and to help develop methods for reducing the effects of terrain slope and aspect in the processing of Landsat data. Finally, a relationship based on model calculations was used to adjust Landsat signal values and was found to reduce topography-related variability and improve subsequent classification performance.

Malila, W. A.↗

NASA NTRS1997

Integration of CELSS Simulation with Long-Term Crop Scheduling

This project presents guidelines for the integration of the Intelligent Crop Scheduler (ICS) developed by Leon (1995) with a version of the Biological Life Support System (BLSS) simulation based on the work by Volk and Rummel (1987). These guidelines will also aid in defining the appropriate model detail of simulation-based schedulers. ICS determines what, when and how much to plant of different crops. These decisions are made such that the critical reservoir levels are maintained close to their nominal or desired settings during the duration of the mission. Initial feasibility of the approach has been demonstrated using simplified implementations of the scheduling approach and CELSS 'world' model developed by the investigator at JSC in the Summer of 1995. The BLSS model incorporates more detail. The increased fidelity is in terms of added mass-regeneration formalism (biochemical stoichiometry), more plants, and more accurate modeling of the mechanical system. This report describes the main features of the Crop scheduler and CELSS simulator, discusses integration issues, and provides with detailed guidelines for the integration of these two applications.

Leon, V. Jorge↗

DOE OSTI2025

Representing Anthropogenic Dust From Agricultural Sources in E3SMv1: Implementation, Evaluation, and Assessment of the Radiative Forcing

Dust emissions related to anthropogenic activities (i.e., anthropogenic dust) is not represented in most global climate models and its radiative impact remains unassessed. In this study, we develop a new and physically based method to parameterize anthropogenic dust emission from agricultural sources (i.e., agricultural dust, or AD) based on the DOE's Energy Exascale Earth System Model version 1 (E3SMv1). This method relates AD emission to the crop land use fraction in the E3SMv1 land component. Major AD sources simulated by our parameterization include those over Central America, the Sahel, North India, and North China. The annual averaged AD emission with diameter less than 10 μm is 567 Tg yr −1 in present-day (year 2000), which contributes to 13.3% of total dust emission. Model evaluation against satellite and ground-based observations shows that the new parameterization can represent AD emissions and global dust cycle reasonably well. We find that the total dust emission increases by 13.1% (495 Tg yr −1 ) from 1850 to 2000 due to the cropland land use fraction changes without considering the impact from climate changes. This induces a net dust direct effective radiative forcing of −0.041 W m −2 at top of the atmosphere. This dust-induced cooling exceeds 10% of the total anthropogenic aerosol direct effective radiative forcing from 1750 to 2014 estimated by the Intergovernmental Panel on Climate Change Sixth Assessment Report. Our findings indicate an important role of anthropogenic dust in global climate change, which should be included in future climate change assessments.

agricultural dust↗

NASA NTRS1992

Analysis of the lettuce data from the variable pressure growth chamber at NASA Johnson Space Center: A three-stage nested design model

A model of three-stage nested experimental design was applied to analyze the lettuce data obtained from the variable pressure growth chamber test bed at NASA-Johnson Space Center. From the results of an application of the analysis of variance and covariance on the data set, it was noted that all of the (uncontrollable) factors, Side, Zone, Height and (controllable) PAR (photosynthetically active radiation), had nonhomogeneous effects on the dry weight of the edible biomass of lettuce per pot. Incidentally, the variations accountable to the (uncontrollable) factorial heterogeneities are merely 9 percent and 17 percent of the total variation for both the first and second crop test, respectively. After adjusting for the PAR as a covariate in the no-intercept model, the accountable variations to all the four factors are 94 percent and 92 percent for the first and the second crop test, respectively. With the use of a no-intercept simple linear regression model, the accountable variations to the factor PAR are 92 percent and 90 percent for the first and the second crop test, respectively. Evidently, the (controllable) factor PAR is the dominating one.

Lee, Tze-San↗

DOE OSTI2024

CO2 response screen in grass Brachypodium reveals the key role of a MAP kinase in CO2-triggered stomatal closure

Abstract Plants respond to increased CO2 concentrations through stomatal closure, which can contribute to increased water use efficiency. Grasses display faster stomatal responses than eudicots due to dumbbell-shaped guard cells flanked by subsidiary cells working in opposition. However, forward genetic screening for stomatal CO2 signal transduction mutants in grasses has yet to be reported. The grass model Brachypodium distachyon is closely related to agronomically important cereal crops, sharing largely collinear genomes. To gain insights into CO2 control mechanisms of stomatal movements in grasses, we developed an unbiased forward genetic screen with an EMS-mutagenized B. distachyon M5 generation population using infrared imaging to identify plants with altered leaf temperatures at elevated CO2. Among isolated mutants, a “chill1” mutant exhibited cooler leaf temperatures than wild-type Bd21-3 parent control plants after exposure to increased CO2. chill1 plants showed strongly impaired high CO2-induced stomatal closure despite retaining a robust abscisic acid-induced stomatal closing response. Through bulked segregant whole-genome sequencing analyses followed by analyses of further backcrossed F4 generation plants and generation and characterization of sodium azide and CRISPR-cas9 mutants, chill1 was mapped to a protein kinase, Mitogen-Activated Protein Kinase 5 (BdMPK5). The chill1 mutation impaired BdMPK5 protein-mediated CO2/HCO3− sensing together with the High Temperature 1 (HT1) Raf-like kinase in vitro. Furthermore, AlphaFold2-directed structural modeling predicted that the identified BdMPK5-D90N chill1 mutant residue is located at the interface of BdMPK5 with the BdHT1 Raf-like kinase. BdMPK5 is a key signaling component that mediates CO2-induced stomatal movements and is proposed to function as a component of the primary CO2 sensor in grasses.

Lopez, Bryn N. K. (ORCID:0009000937288216)↗

NASA NTRS1981

Winter wheat: A model for the simulation of growth and yield in winter wheat

The basic ideas and constructs for a general physical/physiological process level winter wheat simulation model are documented. It is a materials balance model which calculates daily increments of photosynthate production and respiratory losses in the crop canopy. The partitioning of the resulting dry matter to the active growing tissues in the plant each day, transpiration and the uptake of nitrogen from the soil profile are simulated. It incorporates the RHIZOS model which simulates, in two dimensions, the movement of water, roots, and soluble nutrients through the soil profile. It records the time of initiation of each of the plant organs. These phenological events are calculated from temperature functions with delays resulting from physiological stress. Stress is defined mathematically as an imbalance in the metabolite supply; demand ratio. Physiological stress is also the basis for the calculation of rates of tiller and floret abortion. Thus, tillering and head differentiation are modeled as the resulants of the two processes, morphogenesis and abortion, which may be occurring simulaneously.

Baker, D. N.↗

NASA NTRS2017

Temperature Increase Reduces Global Yields of Major Crops in Four Independent Estimates

Wheat, rice, maize, and soybean provide two-thirds of human caloric intake. Assessing the impact of global temperature increase on production of these crops is therefore critical to maintaining global food supply, but different studies have yielded different results. Here, we investigated the impacts of temperature on yields of the four crops by compiling extensive published results from four analytical methods: global grid-based and local point-based models, statistical regressions, and field-warming experiments. Results from the different methods consistently showed negative temperature impacts on crop yield at the global scale, generally underpinned by similar impacts at country and site scales. Without CO2 fertilization, effective adaptation, and genetic improvement, each degree-Celsius increase in global mean temperature would, on average, reduce global yields of wheat by 6.0%, rice by 3.2%, maize by 7.4%, and soybean by 3.1%. Results are highly heterogeneous across crops and geographical areas, with some positive impact estimates. Multi-method analyses improved the confidence in assessments of future climate impacts on global major crops and suggest crop- and region-specific adaptation strategies to ensure food security for an increasing world population.

Zhao, Chuang↗

DOE OSTI2020

The domestic and international implications of future climate for U.S. agriculture in GCAM

Agriculture yields are susceptible to changes in future temperature, precipitation, and other Earth system factors. Future changes to these physical Earth system attributes and their effects on agricultural yields are highly uncertain. United States agricultural producers will be affected by such changes whether they occur domestically or internationally (via international commodity markets). How important to U.S. agriculture are domestic changes due to climate compared to those occurring externally? Here we show that potential direct impacts to United States agriculture have financial impacts on U.S. producers that are roughly similar in magnitude but opposite in sign to impacts on U.S. producers due to changes in other parts of the world. This finding is robust across application of a wide range of potential future crop yield impacts applied to a multi-sector global integrated assessment model. Therefore, when examining country-specific impacts, it is necessary to model both the domestic and international impacts.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Response to “how robust are reductions in modeled estimates from GTAP-BIO of the indirect land use change induced by conventional biofuels?”

Malins et al. (2020) recently published "How robust are reductions in modeled estimates from GTAP-BIO of the indirect land use change induced by conventional biofuels?", provided their narrative from the model improvements in GTAP-BIO over time, made several critical points regarding this model, and argued that the implemented improvements in this model tended to decrease Induce Land Use Changes (ILUC) emissions. Furthermore, they also provided several critical points regarding the Carbon Calculator for Land Use Change from Biofuels Production (CCLUB) emissions model. In this response to Malins et al. we address these critiques point-by-point by providing our detailed responses to key issues: 1) the GTAP-BIO model and its improvements over time; 2) the inclusion of cropland pasture in the model; 3) the observed land use changes in the US that have been the bases for improvements in GTAP-BIO model, 4) the time trends in corn price and yield to challenge the concept of the yield to price response; 5) some sources of land intensification in crop production; 6) the FAO notifications with respect to the comparison between harvested area and arable land; and 7) the GTAP-BIO results for multiple cropping. We also provided responses to Malins et al. critical points regarding the CCLUB emissions model. We hope that this response letter will open more constructive discussion among the LUC modeling community to remain focused on the big picture regarding agriculture's role as a very effective GHG mitigation tool that can shape the new policies to govern the production and consumption of biofuels.

09 BIOMASS FUELS↗

NASA NTRS1996

Intelligent Planning and Scheduling for Controlled Life Support Systems

Planning in Controlled Ecological Life Support Systems (CELSS) requires special look ahead capabilities due to the complex and long-term dynamic behavior of biological systems. This project characterizes the behavior of CELSS, identifies the requirements of intelligent planning systems for CELSS, proposes the decomposition of the planning task into short-term and long-term planning, and studies the crop scheduling problem as an initial approach to long-term planning. CELSS is studied in the realm of Chaos. The amount of biomass in the system is modeled using a bounded quadratic iterator. The results suggests that closed ecological systems can exhibit periodic behavior when imposed external or artificial control. The main characteristics of CELSS from the planning and scheduling perspective are discussed and requirements for planning systems are given. Crop scheduling problem is identified as an important component of the required long-term lookahead capabilities of a CELSS planner. The main characteristics of crop scheduling are described and a model is proposed to represent the problem. A surrogate measure of the probability of survival is developed. The measure reflects the absolute deviation of the vital reservoir levels from their nominal values. The solution space is generated using a probability distribution which captures both knowledge about the system and the current state of affairs at each decision epoch. This probability distribution is used in the context of an evolution paradigm. The concepts developed serve as the basis for the development of a simple crop scheduling tool which is used to demonstrate its usefulness in the design and operation of CELSS.

Leon, V. Jorge↗

NASA NTRS2018

Remote Sensing of Evapotranspiration over the Central Arizona Irrigation and Drainage District, USA

Knowledge of baseline water use for irrigated crops in the U.S. Southwest is important for understanding how much water is consumed under normal farm management and to help manage scarce resources. Remote sensing of evapotranspiration (ET) is an effective way to gain that knowledge: multispectral data can provide synoptic and time-repetitive estimates of crop-specific water use, and could be especially useful for this arid region because of dominantly clear skies and minimal precipitation. Although multiple remote sensing ET approaches have been developed and tested, there is not consensus on which of them should be preferred because there are still few intercomparison studies within this environment. To help build the experience needed to gain consensus, a remote sensing study using three ET models was conducted over the Central Arizona Irrigation and Drainage District (CAIDD). Aggregated ET was assessed for 137 wheat plots (winter/spring crop), 183 cotton plots (summer crop), and 225 alfalfa plots (year-round). The employed models were the Satellite-Based Energy Balance for Mapping Evapotranspiration with Internalized Calibration (METRIC), the Two Source Energy Balance (TSEB), and Vegetation Index ET for the US Southwest (VISW). Remote sensing data were principally Landsat 5, supplemented by Landsat 7, MODIS Terra, MODIS Aqua, and ASTER. Using district-wide model averages, seasonal use (excluding surface evaporation) was 742 mm (millimeters) for wheat, 983 mm for cotton, and 1427 mm for alfalfa. All three models produced similar daily ET for wheat, with 6-8 mm per day mid-season. Model estimates diverged for cotton and alfalfa sites. Considering ET over cotton, TSEB estimates were 9.5 mm per day, METRIC 6 mm per day, and VISW 8 mm per day. For alfalfa, the ET values from TSEB were 8.0 mm per day, METRIC 5 mm per day, and VISW 6 mm per day. Lack of local validation information unfortunately made it impossible to rank model performance. However, by averaging results from all of them, ET model outliers could be identified. They ranged from minus 10 percent to plus 18 percent, values that represent expected ET modeling discrepancies. Relative to the model average, standardized ET-estimators - potential ET (ET (sub 0)), FAO-56 ET, and USDA-SW gravimetric-ET - showed still greater deviations, up to 35 percent of annual crop water use for summer and year-round crops, suggesting that remote sensing of actual ET could lead to significantly improved estimates of crop water use. Results from this study highlight the need for conducting multi-model experiments during summer-months over sites with independent ground validation.

Alfalfa↗

DOE OSTI2025

Interactions Between Climate Mean and Variability Drive Future Agroecosystem Vulnerability

ABSTRACT Agriculture is crucial for global food supply and dominates the Earth's land surface. It is unknown, however, how slow but relentless changes in climate mean state, versus random extreme conditions arising from changing variability , will affect agroecosystems' carbon fluxes, energy fluxes, and crop production. We used an advanced weather generator to partition changes in mean climate state versus variability for both temperature and precipitation, producing forcing data to drive factorial‐design simulations of US Midwest agricultural regions in the Energy Exascale Earth System Model. We found that an increase in temperature mean lowers stored carbon, plant productivity, and crop yield, and tends to convert agroecosystems from a carbon sink to a source, as expected; it also can cause local to regional cooling in the earth system model through its effects on the Bowen Ratio. The combined effect of mean and variability changes on carbon fluxes and pools was nonlinear, that is, greater than each individual case. For instance, gross primary production reduces by 9%, 1%, and 13% due to change in mean temperature, change in temperature variability, and change in both temperature mean and variability, respectively. Overall, the scenario with change in both temperature and precipitation means leads to the largest reduction in carbon fluxes (−16% gross primary production), carbon pools (−35% vegetation carbon), and crop yields (−33% and −22% median reduction in yield for corn and soybean, respectively). By unambiguously parsing the effects of changing climate mean versus variability and quantifying their nonadditive impacts, this study lays a foundation for more robust understanding and prediction of agroecosystems' vulnerability to 21st‐century climate change.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Biota Modeling in EPA’s Preliminary Remediation Goal and Dose Compliance Concentration Calculators for Use in EPA Superfund Risk Assessment: Explanation of Intake Rate Derivation, Transfer Factor Compilation, and Mass Loading Factor Sources

The Preliminary Remediation Goal (PRG) and Dose Compliance Concentration (DCC) calculators are screening level risk assessment tools that set forth the Environmental Protection Agency’s (EPA) recommended approaches and currently available risk assessment guidance for response actions at Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) sites, commonly known as Superfund. The environmental screening levels derived by the PRG and DCC calculators are used to identify isotopes contributing the highest risk and dose as well as establish preliminary remediation goals. Each calculator has residential gardening and subsistence farmer exposure scenarios that model transfer of contaminants from soil and water into various types of biota (crops and animal products). New publications of human intake rates of biota; farm animal intakes of water, soil, and fodder; and soil to plant interactions require updates be implemented into the PRG and DCC calculators. Recent improvements in the biota modeling for these calculators include newly derived biota intake rates, enhanced soil mass loading factors (MLFs), and more comprehensive soil to plant transfer factors (BV’s) and soil to tissue transfer factors (TFs) for animals. New biota have been added in both the produce and animal products categories that greatly improve the accuracy and utility of the PRG and DCC calculators and encompass greater geographic diversity on a national and international scale.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS2014

Estimation of Crop Gross Primary Production (GPP): I. Impact of MODIS Observation Footprint and Impact of Vegetation BRDF Characteristics

Accurate estimation of gross primary production (GPP) is essential for carbon cycle and climate change studies. Three AmeriFlux crop sites of maize and soybean were selected for this study. Two of the sites were irrigated and the other one was rainfed. The normalized difference vegetation index (NDVI), the enhanced vegetation index (EVI), the green band chlorophyll index (CIgreen), and the green band wide dynamic range vegetation index (WDRVIgreen) were computed from the moderate resolution imaging spectroradiometer (MODIS) surface reflectance data. We examined the impacts of the MODIS observation footprint and the vegetation bidirectional reflectance distribution function (BRDF) on crop daily GPP estimation with the four spectral vegetation indices (VIs - NDVI, EVI, WDRVIgreen and CIgreen) where GPP was predicted with two linear models, with and without offset: GPP = a × VI × PAR and GPP = a × VI × PAR + b. Model performance was evaluated with coefficient of determination (R2), root mean square error (RMSE), and coefficient of variation (CV). The MODIS data were filtered into four categories and four experiments were conducted to assess the impacts. The first experiment included all observations. The second experiment only included observations with view zenith angle (VZA) ≤ 35◦ to constrain growth of the footprint size,which achieved a better grid cell match with the agricultural fields. The third experiment included only forward scatter observations with VZA ≤ 35◦. The fourth experiment included only backscatter observations with VZA ≤ 35◦. Overall, the EVI yielded the most consistently strong relationships to daily GPP under all examined conditions. The model GPP = a × VI × PAR + b had better performance than the model GPP = a × VI × PAR, and the offset was significant for most cases. Better performance was obtained for the irrigated field than its counterpart rainfed field. Comparison of experiment 2 vs. experiment 1 was used to examine the observation footprint impact whereas comparison of experiment 4 vs. experiment 3 was used to examine the BRDF impact. Changes in R2, RMSE,CV and changes in model coefficients "a" and "b" (experiment 2 vs. experiment 1; and experiment 4 vs. experiment 3) were indicators of the impacts. The second experiment produced better performance than the first experiment, increasing R2 (↑0.13) and reducing RMSE (↓0.68 g C m−2 d−1) and CV (↓9%). For each VI, the slope of GPP = a × VI × PAR in the second experiment for each crop type changed little while the slope and intercept of GPP = a × VI × PAR + b varied field by field. The CIgreen was least affected by the MODIS observation footprint in estimating crop daily GPP (R2, ↑0.08; RMSE, ↓0.42 g C m−2 d−1; and CV, ↓7%). Footprint most affected the NDVI (R2, ↑0.15; CV, ↓10%) and the EVI (RMSE, ↓0.84 g C m−2 d−1). The vegetation BRDF impact also caused variation of model performance and change of model coefficients. Significantly different slopes were obtained for forward vs. backscatter observations, especially for the CIgreen and the NDVI. Both the footprint impact and the BRDF impact varied with crop types, irrigation options, model options and VI options.

Chlorophyll↗

DOE OSTI2021

Combined Land Use of Solar Infrastructure and Agriculture for Socioeconomic and Environmental Co-Benefits in the Tropics

Solar photovoltaics (PV) are on the rise even in areas of low solar insolation. However, in developing countries with limited capital, land scarcity, or with geographically isolated agrarian communities, large solar infrastructures are often impractical. In these cases, implementation of low-density PV over existing crops may be required to integrate renewable energy services into rural communities. Here, using Indonesia as a model system, we investigated the land use, energy, greenhouse gas emissions, economic feasibility, and the environmental co-benefits associated with off-grid solar PV when combined with high value crop cultivation. The life cycle analyses indicate that small-scale dual land-use systems are economically viable in certain configurations and have the potential to provide several co-benefits including rural electrification, retrofitting diesel electricity generation, and electricity for processing agricultural products locally. A hypothetical full-density off-grid solar PV for a model village in Indonesia shows that electricity output (1907.5 GJ yr-1) is much higher than the total residential consumption (678 GJ yr-1), highlighting the opportunity to downscale the PV infrastructure by half to lower capital cost, to co-locate crops, and to support secondary income generating activities. Economic analysis shows that the 30-year net present cost of electricity from the half-density co-located PV system (12,257 million IDR) is significantly lower than that of the flat cost of diesel required to generate equivalent electricity (14,702 million IDR). Our analysis provides insights for smarter energy planning by optimizing the efficiency of land use and limiting conversion of agricultural and forested areas for energy production.

agrivoltaics↗

NASA NTRS2021

Land-Use Harmonization Datasets for Global Carbon Budget 2019 and Beyond

Land-use change has been the dominant source of anthropogenic carbon emissions for most of the historical period, and is currently one of the largest and most uncertain components of the global carbon cycle. Advancing the scientific understanding on this topic requires that the best data be used as input to the best models in well-organized scientific assessments. The Land-Use Harmonization dataset (LUH2), previously developed and used as input for CMIP6 simulations, has been updated annually to provide required input to land models in the annual Global Carbon Budget (GCB) assessment. These annual LUH2-GCB updates and extensions have incorporated annual FAO wood harvest data updates for dataset years after 2015 and HYDE gridded agriculture area data updates (based on annual FAO agricultural area data updates) for dataset years after 2012, along with extrapolations to the current year due to a lag of one or more years in the FAO data releases. The resulting updated LUH2-GCB datasets have provided global, annual gridded land-use and land-use change data relating toagricultural expansion, deforestation, wood harvesting, shifting cultivation, regrowth and afforestation, and crop rotationsand pasture managementand are used by both book-keeping models and Dynamic Global Vegetation Models (DGVMs) for the GCB. For GCB 2019,a more significant update to LUH2 was produced (LUH2-GCB2019) to correct cropland and grazing area errors in the underlying input datasets for the globally important region of Brazil, as far back as 1950. From 1951-2012 the LUH2-GCB2019 dataset begins to diverge from the LUH2 v2hdataset, with peak differences in Brazil in the year 2000 for grazing land (difference of 100,000 km2) and in the year 2009 for cropland (difference of 77,000 km2), along with significant sub-national reorganization of agricultural land-use patterns within Brazil. These LUH2-GCB2019 corrections for Brazil provide the base for future LUH2-GCB updates including the recent LUH2-GCB2020 dataset, and present a starting point for operationalizing the creation of these datasets toreduce time-lags due to the multiple input dataset and model latencies.

L Chini↗

DOE OSTI2026

Ozone pollution reduction partially offsets the negative impact of climate change mitigation efforts on global hunger

Studies warning of the potential negative effects of climate mitigation on food security through the competing use of land for bioenergy and afforestation have overlooked the impact of reduced ozone and its potential enhancement of crop yields. Here we use six global agro-economic models to compare the impacts of climate change with climate mitigation policy and ozone reduction on agriculture. We find that ozone reduction could reduce the negative impact of a 1.5 °C-consistent climate change mitigation policy on global hunger by 15% in 2050. Sub-Saharan Africa and India, where hunger is most severe, account for 56% of this global reduction. Our findings indicate that the negative effects of climate mitigation on global hunger could be partially offset by the ozone reduction impact.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Image-Based Methods to Score Fungal Pathogen Symptom Progression and Severity in Excised Arabidopsis Leaves

Image-based symptom scoring of plant diseases is a powerful tool for associating disease resistance with plant genotypes. Advancements in technology have enabled new imaging and image processing strategies for statistical analysis of time-course experiments. There are several tools available for analyzing symptoms on leaves and fruits of crop plants, but only a few are available for the model plant Arabidopsis thaliana (Arabidopsis). Arabidopsis and the model fungus Botrytis cinerea (Botrytis) comprise a potent model pathosystem for the identification of signaling pathways conferring immunity against this broad host-range necrotrophic fungus. Here, we present two strategies to assess severity and symptom progression of Botrytis infection over time in Arabidopsis leaves. Thus, a pixel classification strategy using color hue values from red-green-blue (RGB) images and a random forest algorithm was used to establish necrotic, chlorotic, and healthy leaf areas. Secondly, using chlorophyll fluorescence (ChlFl) imaging, the maximum quantum yield of photosystem II (Fv/Fm) was determined to define diseased areas and their proportion per total leaf area. Both RGB and ChlFl imaging strategies were employed to track disease progression over time. This has provided a robust and sensitive method for detecting sensitive or resistant genetic backgrounds. A full methodological workflow, from plant culture to data analysis, is described.

59 BASIC BIOLOGICAL SCIENCES↗