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Nuclear magnetic resonance study of anion and cation dynamics in CsSiH3
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Pairwise Force Smoothed Particle Hydrodynamics model for multiphase flow: Surface tension and contact line dynamics
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Anisotropic single-particle dissipative particle dynamics model
We have developed a new single-particle dissipative particle dynamics (DPD) model for anisotropic particles with different shapes, e.g., prolate or oblate spheroids. In particular, the conservative and dissipative interactions between anisotropic single DPD particles are formulated using a linear mapping from the isotropic model of spherical particles. The proper mapping operator is constructed between each interacting pair of particles at every time step. Correspondingly, the random forces are properly formulated to satisfy the fluctuation-dissipation theorem (FDT). Notably, the model exactly conserves both linear and angular momentum. We demonstrate the proposed model's accuracy and efficiency by applying it for modeling colloidal ellipsoids. Specifically, we show it efficiently captures the static properties of suspensions of colloidal ellipsoids. The isotropic-nematic transition in an ellipsoidal suspension is reproduced by increasing its volume fraction or the aspect ratio of ellipsoid particles. Moreover, the hydrodynamics and diffusion of a single colloidal ellipsoid (prolate or oblate with moderate aspect ratios) are accurately captured. The calculated drag force on the ellipsoid and its diffusion coefficients (both translational and rotational) agree quantitatively with the theoretical predictions in the Stokes limit.
Model reduction of dynamical systems on nonlinear manifolds using deep convolutional autoencoders
Nearly all model-reduction techniques project the governing equations onto a linear subspace of the original state space. Such subspaces are typically computed using methods such as balanced truncation, rational interpolation, the reduced-basis method, and (balanced) proper orthogonal decomposition (POD). Unfortunately, restricting the state to evolve in a linear subspace imposes a fundamental limitation to the accuracy of the resulting reduced-order model (ROM). In particular, linear-subspace ROMs can be expected to produce low-dimensional models with high accuracy only if the problem admits a fast decaying Kolmogorov n -width (e.g., diffusion-dominated problems). Unfortunately, many problems of interest exhibit a slowly decaying Kolmogorov n-width (e.g., advection-dominated problems). To address this, we propose a novel framework for projecting dynamical systems onto nonlinear manifolds using minimum-residual formulations at the time-continuous and time-discrete levels; the former leads to manifold Galerkin projection, while the latter leads to manifold least-squares Petrov–Galerkin (LSPG) projection. We perform analyses that provide insight into the relationship between these proposed approaches and classical linear-subspace reduced-order models; we also derive a posteriori discrete-time error bounds for the proposed approaches. In addition, we propose a computationally practical approach for computing the nonlinear manifold, which is based on convolutional autoencoders from deep learning. Lastly, we demonstrate the ability of the method to significantly outperform even the optimal linear-subspace ROM on benchmark advection-dominated problems, thereby demonstrating the method's ability to overcome the intrinsic n -width limitations of linear subspaces.
Impact of Cr and Co on 99Tc retention in magnetite: A combined study of ab initio molecular dynamics and experiments
This work explores the effect of co-mingled dopants, Co(II) and Cr(III), on Tc(IV) incorporation and retention in magnetite when heat treated to 625 or 700 °C. Key trends in Tc retention in the high temperature regime were identified using a combination of density-functional-theory based ab initio molecular dynamics (AIMD) simulations, and batch experiments including solid phase characterization techniques, e.g. X-ray absorption spectroscopy. A stabilizing effect on Tc(IV) was observed when the number of Tc and Cr atoms are equal or when the magnetite surface is oversaturated with Tc and Cr inclusions. Here, oversaturation is hypothesized to force Cr from the magnetite surface to form a Cr2O3 phase, which may act as a protective layer that prevents Tc release. With the addition of Co, Tc(IV) is stabilized via redox processes. The presence of Cr in low concentrations interferes with this redox stabilization and Cr is preferentially stabilized as opposed to Tc. As a result, using Co as a stabilizing dopant for Tc may be compromised in the presence of Cr. When the relative concentration of Tc, Cr and Co is the same, or more Co atoms are added to high Cr incorporated systems, the formation of the Cr2O3 phase may be suppressed. Although waste streams with co-mingled Tc and Cr potentially may benefit from a Co dopant, since the formation of a Cr2O3 passivation layer may protect incorporated Tc from being released, the relative concentration of the three elements will be a critical parameter for maximizing effectiveness of this strategy.
Molecular dynamics simulation of ballistic effects in simplified nuclear waste glasses
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Ab initio Molecular Dynamics Assessment of Thermodynamic and Transport Properties in (K,Li)Cl and (K, Na)Cl Molten Salt Mixtures
Molten salt mixtures are integral part of highly important technological applications such as nuclear reactors. However, due to inherent difficulties associated with experiment at high temperatures and the intrinsic complexity of liquid-phase multi-component systems, understanding their properties at a molecular level remains a challenge. Here, we report on an ab initio molecular dynamics investigation on structural, electronic, transport, and thermal properties of two common molten salt mixtures, (K, Li)Cl and (K,Na)Cl, at five different compositions and three temperatures. Most of the properties were found to depend on both composition and temperature. While properties, like atomic charges, show additive behaviors, other properties, such as electrical conductivity, show considerable deviations from additivity. We shall show that the mixing of the molten salt mixtures is mainly driven by entropy, and that the KCl and LiCl mix better than KCl and NaCl. Our computational results are in general consistent with available experimental data. Comparison with available theoretical data is also provided.
Dynamic response of a freely rotating butterfly valve in the advanced test reactor – dynamic fluid-body interaction modeling
To regulate primary coolant flow in the Advanced Test Reactor (ATR), a butterfly valve was installed between the primary coolant pumps and the reactor core. If the mechanical connection between the valve's disk and its shaft ever fails, the disk will rotate freely. Rapid disk rotation may induce pressure surges that could damage upstream pipes. In the present work, the rotational trajectory and pressure evolution during a disk free-rotation scenario were analyzed via the dynamic fluid-body interaction (DFBI) approach in STAR-CCM+, with the movement of a solid being driven by the forces and moment/torque imposed by its surrounding fluid. Assuming a large initial opening angle, the disk accelerates slowly, but swiftly passes the closed position. As a result of the sudden valve closure, a pressure surge occurs in the upstream pipes, exceeding their maximum allowable pressure. Furthermore, the disk does not stabilize at the closed position but continually oscillates due to the unsteady nature of the coolant flow. Because of the significant and continuous water hammer effect, a fix to the butterfly valve is being implemented to prevent rapid valve closure due to failure at the valve's disk/shaft mechanical connection.
Dynamic modeling of subcellular phenylpropanoid metabolism in Arabidopsis lignifying cells
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Comparison of the Forward and Reverse Photocycle Dynamics of Two Highly Similar Canonical Red/Green Cyanobacteriochromes Reveals Unexpected Differences
Cyanobacteriochromes (CBCRs) are cyanobacterial photoreceptors that exhibit photochromism between two states: a thermally stable dark-adapted state and a metastable light-adapted state with bound linear tetrapyrrole (bilin) chromophores possessing 15Z and 15E configurations, respectively. The photodynamics of canonical red/green CBCRs have been extensively studied; however, the time scales of their excited-state lifetimes and subsequent ground-state evolution rates widely differ and, at present, remain difficult to predict. Here, we compare the photodynamics of two closely related red/green CBCRs that have substantial sequence identity (~68%) and similar chromophore environments: AnPixJg2 from Anabaena sp. PCC 7120 and NpR6012g4 from Nostoc punctiforme. Using broadband transient absorption spectroscopy on the primary (125 fs to 7 ns) and secondary (7 ns to 10 ms) time scales together with global analysis modeling, our studies revealed that AnPixJg2 and NpR6012g4 have comparable quantum yields for initiating the forward ( 15Z P r → 15E P g ) and reverse ( 15E P g → 15Z P r ) reactions, which proceed through monotonic and nonmonotonic mechanisms, respectively. In addition to small discrepancies in the kinetics, the secondary reverse dynamics resolved unique features for each domain: intermediate shunts in NpR6012g4 and a Meta-Gf intermediate red-shifted from the 15Z P r photoproduct in AnPixJg2. Altogether, this study supports the conclusion that sequence similarity is a useful criterion for predicting pathways of the light-induced evolution and quantum yield of generating primary intermediate Φ p within subfamilies of CBCRs, but more studies are still needed to develop a comprehensive molecular level understanding of these processes.
Multicomponent Oxynitride Thin Films: Precise Growth Control and Excited State Dynamics
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