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At least 667 records · Page 37

Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles

Transposable elements (TEs) are exceptional contributors to eukaryotic genome diversity. Their ubiquitous presence impacts the genomes of nearly all species and mediates genome evolution by causing mutations and chromosomal rearrangements and by modulating gene expression. We performed an exhaustive analysis of the TE content in 18 fungal genomes, including strains of the same species and species of the same genera. Our results depicted a scenario of exceptional variability, with species having 0.02 to 29.8% of their genome consisting of transposable elements. A detailed analysis performed on two strains of Pleurotus ostreatus uncovered a genome that is populated mainly by Class I elements, especially LTR-retrotransposons amplified in recent bursts from 0 to 2 million years (My) ago. The preferential accumulation of TEs in clusters led to the presence of genomic regions that lacked intra- and inter-specific conservation. In addition, we investigated the effect of TE insertions on the expression of their nearby upstream and downstream genes. Our results showed that an important number of genes under TE influence are significantly repressed, with stronger repression when genes are localized within transposon clusters. Our transcriptional analysis performed in four additional fungal models revealed that this TE-mediated silencing was present only in species with active cytosine methylation machinery. We hypothesize that this phenomenon is related to epigenetic defense mechanisms that are aimed to suppress TE expression and control their proliferation.

59 BASIC BIOLOGICAL SCIENCES↗

AeroDyn V15.04: Design Tool for Wind and MHK Turbines

AeroDyn is a time-domain wind and MHK turbine aerodynamics module that can be coupled into the FAST version 8 multi-physics engineering tool to enable aero-elastic simulation of horizontal-axis wind turbines. AeroDyn V15.04 has been updated to include a cavitation check for MHK turbines, and can be driven as a standalone code to compute wind turbine aerodynamic response uncoupled from FAST. Note that while AeroDyn has been updated to v15.04, FAST v8.16 has not yet been updated and still uses AeroDyn v15.03.

16 TIDAL AND WAVE POWER↗

Uncertainty Evaluation of Measurements with Pyranometers and Pyrheliometers

Evaluating photovoltaic (PV) cells, modules, arrays and systems performance of solar energy relies on accurate measurement of the available solar radiation resources. Solar radiation resources are measured using radiometers such as pyranometers (global horizontal irradiance) and pyrheliometers (direct normal irradiance). The accuracy of solar radiation data measured by radiometers depends not only on the specification of the instrument but also on a) the calibration procedure, b) the measurement conditions and maintenance, and c) the environmental conditions. Therefore, statements about the overall measurement uncertainty can only be made on an individual basis, taking all relevant factors into account. This paper provides guidelines and recommended procedures for estimating the uncertainty in measurements by radiometers using the Guide to the Expression of Uncertainty (GUM) Method. Special attention is paid to the concept of data availability and its link to uncertainty evaluation.

14 SOLAR ENERGY↗

A 100 kW 1.3 GHz Magnetron System with Amplitude and Phase Control

Calabazas Creek Research, Inc., Fermilab, and Communications & Power Industries, LLC, developed a 100 kW peak, 10 kW average, 1.3 GHz, magnetron-based, RF system for driving accelerators. Efficiency varied between 81% and 87%. Phase locking uses a novel approach that provides fast amplitude and phase control when coupled into a superconducting accelerator cavity [1]. The system was successfully tested at Fermilab and produced 100 kW in 1.5 ms pulses at a repetition rate of 2 pps. A locking bandwidth of 0.9 MHz was achieved with a drive signal of 269 W injected through a 4 port circulator. The phase locking signal was 25 dB below the magnetron output power. The spectrum of the phase locked magnetron was suitable for driving accelerator cavities. Phase modulation was demonstrated to 50 kHz (the limit of the available driver source). The average power was limited by available conditioning time. Scaling indicates 42 kW of average power should be achievable. Estimated cost is less than $1/Watt of delivered RF power, exclusive of power supplies or modulators. System design and performance measurements will be presented.

43 PARTICLE ACCELERATORS↗

Production of Astatine-211 at the Duke University Medical Center for its regional distribution

Systemic targeted radiation therapy and radioimmunotherapy continue to be important tools in the treatment of certain cancers. Because of their high energy and short path length, alpha particle emitters such as 211 At are more effective than either external beam x- ray or in vivo beta radiation in delivering potentially curative doses of radiation. The limited clinical trials that have been conducted to date have yielded encouraging responses in some patients, e.g., malignant brain tumors. In order to escalate the additional necessary research and development in radiochemistry, radiobiology and efficacy evaluation of alpha particle radiotherapeutics, it is universally agreed that access to an affordable, reliable supply of 211 At is warranted. In conjunction with the Department of Energy's intent to enhance stable and radioactive isotope availability for research applications, it is the primary objective of this project to improve 211 At production and purification capabilities at Duke so that this radionuclide can be supplied to researchers at other institutions throughout the US.The most widely used 211 At production method involves the α,2n reaction on Bismuth using a cyclotron with beams ≤ 28 MeV. Yields can be enhanced with use of an internal target that allows for a higher alpha fluence plus efficient heat dissipation in the target. Both of these items are in place at Duke; however, in order to support production for multi-institutional use, irradiation campaigns in excess of 50 µAp and four hours duration will be needed. Further, post-irradiation processing equipment is lacking that will enable the distribution process. Financial support is sought for i) a shielded, ventilated processing/containment hood; ii) development of a post-irradiation target retrieval system; iii) fabrication of a 211 At distillation and recovery module and iv) a performance review and, where needed, an enhancement of seven major subsystems that comprise the CS-30 Cyclotron. With these modifications in place, routine production of ≥200 mCi of At-211 should be readily achievable, given our methodological development of At-211 target preparation, internal target irradiation and dry distillation to recover the radionuclide.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

SUBGR: A Program to Generate Subgroup Data for the Subgroup Resonance Self-Shielding Calculation

The Subgroup Data Generation (SUBGR) program generates subgroup data, including levels and weights from the resonance self-shielded cross section table as a function of background cross section. Depending on the nuclide and the energy range, these subgroup data can be generated by (a) narrow resonance approximation, (b) pointwise flux calculations for homogeneous media; and (c) pointwise flux calculations for heterogeneous lattice cells. The latter two options are performed by the AMPX module IRFFACTOR. These subgroup data are to be used in the Consortium for Advanced Simulation of Light Water Reactors (CASL) neutronic simulator MPACT, for which the primary resonance self-shielding method is the subgroup method.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

SynTec Final Technical Report: Synthetic biology for Tailored Enzyme cocktails

Using a novel enzyme screening method inspired by synthetic biology, Novozymes developed new technology under SynTec which allows for more rapidly tailoring of enzyme cocktails. The methodology can be applied to specific feedstocks, and or coupled to address a specific hydrolytic conversion process context. Using combinatorial high throughput screening of libraries of enzyme domains, we can quickly assess which combination of catalytic modules delivers the best performance for a specific condition. To demonstrate the effectiveness of the screening process, we measured performance of the output catalytic cocktail compared to CTec3/HTec3. SynTec benchmark cocktail - blend of Cellic® CTec3 and HTec3. The test substrate was - ammonia fiber expansion pretreated corn stover (AFEX™ PCS).CTec3/HTec3 was assayed at the optimal pH and temperature, and also in the absence of any pH adjustment. The new enzyme cocktail discovered under SynTec was assayed in the absence of any pH adjustment and at the optimal temperature. Conversion is delivered by SynTec enzyme at significant dose reduction relative to CTec3/HTec3 at the controlled pH optimum, and without titrant required to maintain pH, which delivers additional cost savings relative to current state of the art process. In this 2.5 year $4M project, the team delivered an experimental cocktail that significantly outperformed CTec3/HTec3 for a specific substrate, and for specific hydrolysis conditions. As a means of comparing performance improvement delivered per research dollar spent, we note that SynTec delivered a similar performance improvement to the previous award, in a shorter time and with fewer resources than for the previously successful DOE project DECREASE, a 3.5 year, $25M project, though this project focused on a different substrate and used different hydrolysis conditions. The newly implemented technology for rapid sourcing of new cellulases and hemicellulases from nature is an example of Novozymes' continued innovation that results in more effective products for the advanced biofuel market.

09 BIOMASS FUELS↗

Thermal Modeling of the TN-32B Cask for the High Burnup Spent Fuel Data Project

This report describes thermal modeling done for the High Burnup Dry Storage Research Project that is being performed by the U.S. Department of Energy’s Spent Fuel and Waste Science and Technology (SFWST) research and development (R&D) program. The purpose of this project to investigate the performance of high-burnup spent nuclear fuel in dry storage. Part of this project is a demonstration test being performed with a storage module in the North Anna Nuclear Power Station’s Independent Spent Fuel Storage Installation (ISFSI). The storage module selected for this demonstration is an Orano TN-32B High Burnup cask (Fig. S-1) which has been loaded with fuel assemblies from the North Anna spent fuel pool. The main goals of this test are to provide confirmatory data for model validation and potential improvement, support license renewals and new licenses for ISFSIs, and support transportation licensing for high burnup spent nuclear fuel (EPRI 2014).

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

High-Burnup Demonstration: Thermal Modeling of TN-32B Vacuum Drying and ISFSI Transients

This report describes thermal modeling done for the High-Burnup Spent Fuel Data Project that is being performed by the U.S. Department of Energy’s Spent Fuel and Waste Science and Technology research and development program. The purpose of this project is to investigate the performance of high-burnup spent nuclear fuel in dry storage. Part of this project is a demonstration test being performed with a storage module in the North Anna Nuclear Power Station’s Independent Spent Fuel Storage Installation (ISFSI). The storage module selected for this demonstration is an Orano TN-32B High-Burnup cask which has been loaded with fuel assemblies from the North Anna spent fuel pool.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Modeling the Nonlinear Rheology of Polymer Additive Manufacturing

This report summarizes molecular and continuum simulation studies focused on developing physics - based predictive models for the evolution of polymer molecular order during the nonlinear processing flows of additive manufacturing. Our molecular simulations of polymer elongation flows identified novel mechanisms of fluid dissipation for various polymer architectures that might be harnessed to enhance material processability. In order to predict the complex thermal and flow history of polymer realistic additive manufacturing processes, we have developed and deployed a high - performance mesh - free hydrodynamics module in Sandia's LAMMPS software. This module called RHEO – short for Reproducing Hydrodynamics and Elastic Objects – hybridizes an updated - Lagrange reproducing - kernel method for complex fluids with a bonded particle method (BPM) to capture solidification and solid objects in multiphase flows. In combination, our two methods allow rapid, multiscale characterization of the hydrodynamics and molecular evolution of polymers in realistic processing geometries.

36 MATERIALS SCIENCE↗

Analysis of Photovoltaic Energy: CRADA Number CRD-21-17862 (Cooperative Research and Development Final Report)

For this project, NREL will work with the Participant to model phase change material performance, model photovoltaic thermodynamics performance, and predict photovoltaic module durability based on environmental conditions to help develop optimized photovoltaic roofing designs. This project will develop thermodynamic models of integrated photovoltaic roofing with phase change materials. These models will be used to optimize the materials and design selections based on reducing photovoltaic operating temperatures while balancing cost effective integration of phase change materials.

14 SOLAR ENERGY↗

Intelligent Proppants for Hydraulic Fracture Diagnostics

This Phase 1 Report details our Phase 1 progress in proving the feasibility of a highly integrated, highly miniaturized sensor ball. The ball contains sensors, analog to digital converters, memory, a clock, and an acoustic communications module all integrated onto a single silicon chip. Phase 2 is to focus on the application specific integrated circuit (ASIC). Phase 1 piecewise proves the feasibility of this innovation by examining a few critical subsystems including the communications module and inertial sensor performance. Acoustic simulations of an acoustically active and traceable proppant are also performed and summarized in this report.

01 COAL, LIGNITE, AND PEAT↗

Optimization of an Interaction Region Quadrupole Magnet for a Future Electron-Ion Collider at JLab

The Jefferson Lab Electron Ion Collider (JLEIC) is a proposed new machine for nuclear physics research. It uses the existing CEBAF accelerator as a full energy injector to deliver 3 to 11 GeV electrons into a new electron collider ring. An all new ion accelerator and collider complex will deliver up to 200 GeV protons. The machine has luminosity goals of 10 34 cm -2 sec -1 . The whole detector region including forward detection covers about 80 meters of the JLEIC complex. The lattice file for the machine has changed to accommodate the higher energy; this change requires all the magnets in the interaction region to change. This paper will describe the requirements for both the ion and electron beam superconducting magnets around the interaction point. All the Final Focusing Quadrupole (FFQ) magnets now have preliminary designs. This paper will describe the optimization process for one of these FFQs. The optimization is performed using the optimization module of SIMULIA Opera FEA and compared with ROXIE. An analytical design tool has also been developed to estimate the peak field in the coils. The quadrupole has been optimized for peak field in the coils, and magnetic length.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Separation and Enrichment of Xenon in Air (SBIR Phase II Final Report)

High-performance composite membranes and high-performance spiral-wound modules have been successfully developed that can be used to detect the concentration of xenon present in the atmosphere. The selective membrane material is Hyflon® AD 60, a perfluorinated polymer available from Solvay. The material has a nitrogen/xenon selectivity of at least five. The membranes were incorporated into spiral-wound modules that have special baffles in the feed channels. The baffles increase gas velocity and allow the module to be operated at stage cuts of 90% or higher, while maintaining their separation efficiency. A prototype system was constructed and tested at MTR. The system was subsequently shipped to the Savannah River National Laboratory where it was operated with local atmospheric air. The results obtained by MTR and Savannah River are equivalent and show that the system is capable of concentrating xenon by a factor of 35 at a xenon recovery of 50%.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

PV module spectral response measurements - Data and Resources

"This dataset includes spectral response curves for 12 commercial silicon module types that are deployed at SNL in Albuquerque. The modules chosen for evaluation were originally purchased by SNL for the PV Lifetime project (renamed to Systems Long-Term Evaluation [SLTE]). The majority of those modules are deployed outdoors for long-term evaluation, but several modules of each type were placed in storage for future comparison purposes. One stored module of each type was sent to NREL for the spectral response measurements. NREL used the recently developed Module Quantum Efficiency (QE) test bed. What makes this system unique is that it scans the entire module automatically, taking one or more measurements on each cell. Using the mean of these measurements at each wavelength leads to improvements in spectral mismatch correction and module power measurements but having the individual measurements also makes it possible to identify outlier cells, which could be useful for investigating underperforming modules. All measurements were performed nominally at 25°C"

14 SOLAR ENERGY↗

STFM: Accurate Spatio-Temporal Fusion Model for Weather Forecasting

Meteorological prediction is crucial for various sectors, including agriculture, navigation, daily life, disaster prevention, and scientific research. However, traditional numerical weather prediction (NWP) models are constrained by their high computational resource requirements, while the accuracy of deep learning models remains suboptimal. In response to these challenges, we propose a novel deep learning-based model, the Spatiotemporal Fusion Model (STFM), designed to enhance the accuracy of meteorological predictions. Our model leverages Fifth-Generation ECMWF Reanalysis (ERA5) data and introduces two key components: a spatiotemporal encoder module and a spatiotemporal fusion module. The spatiotemporal encoder integrates the strengths of convolutional neural networks (CNNs) and recurrent neural networks (RNNs), effectively capturing both spatial and temporal dependencies. Meanwhile, the spatiotemporal fusion module employs a dual attention mechanism, decomposing spatial attention into global static attention and channel dynamic attention. This approach ensures comprehensive extraction of spatial features from meteorological data. The combination of these modules significantly improves prediction performance. Experimental results demonstrate that STFM excels in extracting spatiotemporal features from reanalysis data, yielding predictions that closely align with observed values. In comparative studies, STFM outperformed other models, achieving a 7% improvement in ground and high-altitude temperature predictions, a 5% enhancement in the prediction of the u/v components of 10 m wind speed, and an increase in the accuracy of potential height and relative humidity predictions by 3% and 1%, respectively. This enhanced performance highlights STFM’s potential to advance the accuracy and reliability of meteorological forecasting.

54 ENVIRONMENTAL SCIENCES↗

Comparison of Multi-Objective Evolutionary Algorithms to Solve the Modular Cell Design Problem for Novel Biocatalysis

A large space of chemicals with broad industrial and consumer applications could be synthesized by engineered microbial biocatalysts. However, the current strain optimization process is prohibitively laborious and costly to produce one target chemical and often requires new engineering efforts to produce new molecules. To tackle this challenge, modular cell design based on a chassis strain that can be combined with different product synthesis pathway modules has recently been proposed. This approach seeks to minimize unexpected failure and avoid task repetition, leading to a more robust and faster strain engineering process. In our previous study, we mathematically formulated the modular cell design problem based on the multi-objective optimization framework. In this study, we evaluated a library of state-of-the-art multi-objective evolutionary algorithms (MOEAs) to identify the most effective method to solve the modular cell design problem. Using the best MOEA, we found better solutions for modular cells compatible with many product synthesis modules. Furthermore, the best performing algorithm could provide better and more diverse design options that might help increase the likelihood of successful experimental implementation. We identified key parameter configurations to overcome the difficulty associated with multi-objective optimization problems with many competing design objectives. Interestingly, we found that MOEA performance with a real application problem, e.g., the modular strain design problem, does not always correlate with artificial benchmarks. Overall, MOEAs provide powerful tools to solve the modular cell design problem for novel biocatalysis.

Garcia, Sergio (ORCID:000000023998986X)↗