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MARLOWE: An Untargeted Proteomics, Statistical Approach to Taxonomic Classification for Forensics

General proteomics research for fundamental science typically addresses laboratory- or patient-derived samples of known origin and composition. However, in a few research areas, such as environmental proteomics, clinical identification of infectious organisms, archeology, art/cultural history, and forensics, attributing the origin of a protein-containing sample to the organisms that produced it is a central focus. A small number of groups have approached this problem and developed software tools for taxonomic characterization and/or identification using bottom-up proteomics. Most such tools identify peptides via database search, and many rely on organism-specific peptides as markers. Our group recently introduced MARLOWE, a software tool for taxonomic characterization of unknown samples based on de novo peptide identification and signal-erosion-resistant strong peptides, which are shared peptides distributed in a taxonomy-dependent manner. In the current work, we further characterize the utility of MARLOWE using publicly available proteomics data from forensically-relevant samples. MARLOWE characterizes samples based on their protein profile, and returns ranked organism lists of potential contributors and taxonomic scores based on shared strong peptides between organisms. Overall, the correct characterization rate ranges between 44 and 100%, depending on the sample type and data acquisition parameters (with lower numbers associated with lower-quality data sets). MARLOWE demonstrates successful characterization of true contributors and close relatives, and provides sufficient specificity to distinguish certain microbial species. MARLOWE demonstrates its ability to provide insight into potential taxonomic sources for a wide range of sample types without prior assumptions about sample contents. As a result, this approach can find utility in forensic science and also broadly in bioanalytical applications that utilize proteomics approaches for taxonomic characterization.

Bacteria↗

Overview of the Galileo Probe Mission to Jupiter

The Galileo Probe entered the atmosphere of Jupiter on December 7, 1995, for the first time directly sampling the atmosphere of one of the outer planets. The entry was the most difficult ever attempted in terms of heat and deceleration loads. The probe and all scientific instruments functioned successfully, and returned data on composition, clouds, thermal structure, winds, energy balance, lightning, and inner radiation belts. A probe mission overview is presented, highlighting the key mission events and major science objectives. The purpose of the overview is to set the stage for the following papers which describe findings from the probe scientific investigations and discuss implications of the probe results.

Young, Richard E.↗

Using Dust from Asteroids as Regolith Microsamples

Meteorite science is rich with compositional indicators by which we classify parent bodies, but few sample groups are definitively linked with asteroid spectra. More robust links need to be forged between meteorites and their parent bodies to understand the composition, diversity and distribution. A major link can be sample analysis of the parent body material and comparison with meteorite data. Hayabusa, the first sample return mission of the Japanese Aerospace Exploration Agency (JAXA), was developed to rendezvous with and collect samples from asteroid Itokawa and return them to Earth. Thousands of sub-100 micron particles were recovered, apparently introduced during the spacecraft impact into the surface of the asteroid, linking the asteroid Itokawa to LL chondrites [1]. Upcoming missions Hayabusa 2 and OSIRIS-REx will collect more significant sample masses from asteroids. In all these cases, the samples are or will be a collection of regolith particles. Sample return to earth is not the only method for regolith particle analysis. Dust is present around all airless bodies, generated by micrometeorite impact into their airless surfaces, which in turn lofts regolith particles into a "cloud" around the body. The composition, flux, and size-frequency distribution of dust particles can provide significant insight into the geological evolution of airless bodies [2]. For example, the Cassini Cosmic Dust Analyzer (CDA) detected salts in Enceladus' icy plume material, providing evidence for a subsurface ocean in contact with a silicate seafloor [3]. Similar instruments have flown on the Rosetta, LADEE, and Stardust missions. Such an instrument may be of great use in obtaining the elemental, isotopic and mineralogical composition measurement of dust particles originating from asteroids without returning the samples to terrestrial laboratories. We investigated the ability of a limited sample analysis capability using a dust instrument to forge links between asteroid regolith particles and known meteorite groups. We further set limits on the number of individual particles statistically needed to robustly reproduce a bulk composition.

microsamples↗

Multiple Discipline science assessment

Various science disciplines were examined to determine where and when it is appropriate to include their objectives in the planning of planetary missions. The disciplines considered are solar astronomy, stellar and galactic astronomy, solar physics, cosmology and gravitational physics, the geosciences and the applied sciences. For each discipline, science objectives are identified which could provide a multiple discipline opportunity utilizing either a single spacecraft or two spacecraft delivered by a single launch vehicle. Opportunities using a common engineering system are also considered. The most promising opportunities identified include observations of solar images and relativistic effects using the Mercury orbiter; collection of samples exposed to solar radiation using the Mars surface sample return; studies of interstellar neutral H and He, magnetic fields, cosmic rays, and solar physics during Pluto or Neptune flybys; using the Mars orbiter to obtain solar images from 0.2 AU synchronous or from 90 deg orbit; and the study of the structure and composition of the atmosphere using atmospheric probes and remotely piloted vehicles.

Wells, W. C.↗

Participation in the 1996 Arlindo Cruise to the Indonesian Seas

The objective of Arlindo-Productivity is to understand the factors responsible for regional differences in the response of phytoplankton and zooplankton to the SE and NW Monsoons in Indonesia. The hypothesis is that an interplay between circulation and shoaling of the nutricline, as a response to the monsoons, regulates productivity in the Indonesian Seas. My o@jective for the cruise in 1996 was to continue our collaboration with Indonesian scientists by conducting a set of hydrographic, primary production and spectral irradiance observations in the Indonesian Seas. This grant paid for shipping, travel and incidental costs associated with participation in the cruise in December, 1996. Ship costs were borne by the Indonesian Institute of Sciences as part of the collaborative effort. A plan for Arlindo in 1996 was agreed upon in March, 1996, by Indonesian scientists together with Arnold Gordon. The plan called for a 20-day physical oceanography and mooring cruise in November, 1996, followed by a 5-day bio-optical cruise. The bio-optical cruise departed from, and returned to, Ambon, and sampled in the Banda Sea. We completed a series of chlorophyll analyses, both a sampling of surface variability and depth profiles in the Banda Sea. We also completed three MER profiles for depth profiles of spectral irradiance. These data have a useful by-product in that they can be used for vicarious calibration of the OCTS sensor aboard the ADEOS satellite. As such, the data has been transmitted to NASDA in Japan for their use.

Marra, John↗

Mars Mobile Lander Systems for 2005 and 2007 Launch Opportunities

A series of Mars missions are proposed for the August 2005 launch opportunity on a medium class Evolved Expendable Launch Vehicle (EELV) with a injected mass capability of 2600 to 2750 kg. Known as the Ranger class, the primary objective of these Mars mission concepts are: (1) Deliver a mobile platform to Mars surface with large payload capability of 150 to 450 kg (depending on launch opportunity of 2005 or 2007); (2) Develop a robust, safe, and reliable workhorse entry, descent, and landing (EDL) capability for landed mass exceeding 750 kg; (3) Provide feed forward capability for the 2007 opportunity and beyond; and (4) Provide an option for a long life telecom relay orbiter. A number of future Mars mission concepts desire landers with large payload capability. Among these concepts are Mars sample return (MSR) which requires 300 to 450 kg landed payload capability to accommodate sampling, sample transfer equipment and a Mars ascent vehicle (MAV). In addition to MSR, large in situ payloads of 150 kg provide a significant step up from the Mars Pathfinder (MPF) and Mars Polar Lander (MPL) class payloads of 20 to 30 kg. This capability enables numerous and physically large science instruments as well as human exploration development payloads. The payload may consist of drills, scoops, rock corers, imagers, spectrometers, and in situ propellant production experiment, and dust and environmental monitoring.

Sabahi, D.↗

Reactive Sequencing for Autonomous Navigation Evolving from Phoenix Entry, Descent, and Landing

Virtual Machine Language (VML) is an award-winning advanced procedural sequencing language in use on NASA deep-space missions since 1997, and was used for the successful entry, descent, and landing (EDL) of the Phoenix spacecraft onto the surface of Mars. Phoenix EDL utilized a state-oriented operations architecture which executed within the constraints of the existing VML 2.0 flight capability, compatible with the linear "land or die" nature of the mission. The intricacies of Phoenix EDL included the planned discarding of portions of the vehicle, the complex communications management for relay through on-orbit assets, the presence of temporally indeterminate physical events, and the need to rapidly catch up four days of sequencing should a reboot of the spacecraft flight computer occur shortly before atmospheric entry. These formidable operational challenges led to new techniques for packaging and coordinating reusable sequences called blocks using one-way synchronization via VML sequencing global variable events. The coordinated blocks acted as an ensemble to land the spacecraft, while individually managing various elements in as simple a fashion as possible. This paper outlines prototype VML 2.1 flight capabilities that have evolved from the one-way synchronization techniques in order to implement even more ambitious autonomous mission capabilities. Target missions for these new capabilities include autonomous touch-and-go sampling of cometary and asteroidal bodies, lunar landing of robotic missions, and ultimately landing of crewed lunar vehicles. Close proximity guidance, navigation, and control operations, on-orbit rendezvous, and descent and landing events featured in these missions require elaborate abort capability, manifesting highly non-linear scenarios that are so complex as to overtax traditional sequencing, or even the sort of one-way coordinated sequencing used during EDL. Foreseeing advanced command and control needs for small body and lunar landing guidance, navigation and control scenarios, work began three years ago on substantial upgrades to VML that are now being exercised in scenarios for lunar landing and comet/asteroid rendezvous. The advanced state-based approach includes coordinated state transition machines with distributed decision-making logic. These state machines are not merely sequences - they are reactive logic constructs capable of autonomous decision making within a well-defined domain. Combined with the JPL's AutoNav software used on Deep Space 1 and Deep Impact, the system allows spacecraft to autonomously navigate to an unmapped surface, soft-contact, and either land or ascend. The state machine architecture enabled by VML 2.1 has successfully performed sampling missions and lunar descent missions in a simulated environment, and is progressing toward flight capability. The authors are also investigating using the VML 2.1 flight director architecture to perform autonomous activities like rendezvous with a passive hypothetical Mars sample return capsule. The approach being pursued is similar to the touch-and-go sampling state machines, with the added complications associated with the search for, physical capture of, and securing of a separate spacecraft. Complications include optically finding and tracking the Orbiting Sample Capsule (OSC), keeping the OSC illuminated, making orbital adjustments, and physically capturing the OSC. Other applications could include autonomous science collection and fault compensation.

asteroid↗

OrganiCam: First Camera for Noncontact Biodetection in Space

Los Alamos National Laboratory designed a compact laser-induced fluorescence imaging camera with Raman spectrometer to identify organic molecules and biosignatures in environments such as Martian caves, icy-moons, and asteroid surfaces. OrganiCam is the primary instrument on the Laser-Induced Fluorescence Exploration of Caves for Organics and Volatiles using an Elevated Platform (LIFE COVE) NASA mission concept. OrganiCam could also determine if instruments being sent into space for NASA are sterile and analyze samples returned to Earth. OrganiCam’s robust design for extreme environments, portability, simple operation, and low power requirement build on LANL’s 50+ years designing robotic instruments for space applications.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

The Genesis Mission: A Unique Opportunity for Scientific Collaboration

The Genesis Solar Wind Sample Return was flown with the goal of creating a baseline of elemental and isotopic solar photospheric composition from solar matter (not rocks!) for use in cosmochemical modeling. No uses for the samples outside of Cosmochemistry were advertised, and for good reason. In these days of limited funding, there is an overwhelming tendency to look inward instead of recognizing that the best outcomes of science tend to be interdisciplinary. So, below, we suggest two radical acts of collaboration that we believe will accelerate the advancement of science.

A. J. G. Jurewicz↗

MPACT LSDS Progress Report: LANL and LANL-Funded Activities in Support of Spent Fuel Measurements Using a Lead Slowing Down Spectrometer in FY 2012

During FY 2012, Lead Slowing Down Spectrometer (LSDS) measurement campaigns took place at the Los Alamos Neutron Science Center, and the Rensselaer Polytechnic Institute. At Los Alamos, we measured the response of a thorium fission chamber to a 25 gram plutonium sample, and evaluated the performance of a 4 He-filled proportional counter. At RPI, the effort lead by Professor Danon, performed an assay of fuel pins, and used a fission chamber with plutonium to evaluate the impact of room return.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Planetary spacecraft pointing and control - The next 20 years

Pointing and control systems recommended for NASA planetary exploration missions of the next twenty years are discussed. The functional and operational requirements and design constraints imposed on the driving control system by the mission and science goals of the spacecraft are examined. Criteria for the selection of a pointing and control system type (spin, dual-spin, three-axis active or momentum bias) are outlined, including payload functional characteristics, orbital characteristics, vehicle configuration and mission duration, and candidate system types proposed for preliminary survey, detailed remote observation, deep space close scrutiny, near-sun close scrutiny and sample return missions are indicated. Trends in control system design are discussed, and key enabling technology areas that will require additional or new development are considered, with particular emphasis on laser and fiber optics gyros, CCD arrays and DMA signal/power transmission, bearings and motor technologies, directed at three-axis active and dual-spin implementations.

Mcglinchey, L. F.↗

Overview and Results From the Mars 2020 Perseverance Rover's First Science Campaign on the Jezero Crater Floor

The Mars 2020 Perseverance rover landed in Jezero crater on 18 February 2021. After a 100-sol period of commissioning and the Ingenuity Helicopter technology demonstration, Perseverance began its first science campaign to explore the enigmatic Jezero crater floor, whose igneous or sedimentary origins have been much debated in the scientific community. This paper describes the campaign plan developed to explore the crater floor's Máaz and Séítah formations and summarizes the results of the campaign between sols 100–379. By the end of the campaign, Perseverance had traversed more than 5 km, created seven abrasion patches, and sealed nine samples and a witness tube. Analysis of remote and proximity science observations show that the Máaz and Séítah formations are igneous in origin and composed of five and two geologic members, respectively. The Séítah formation represents the olivine-rich cumulate formed from differentiation of a slowly cooling melt or magma body, and the Máaz formation likely represents a separate series of lava flows emplaced after Séítah. The Máaz and Séítah rocks also preserve evidence of multiple episodes of aqueous alteration in secondary minerals like carbonate, Fe/Mg phyllosilicates, sulfates, and perchlorate, and surficial coatings. Post-emplacement processes tilted the rocks near the Máaz-Séítah contact and substantial erosion modified the crater floor rocks to their present-day expressions. Results from this crater floor campaign, including those obtained upon return of the collected samples, will help to build the geologic history of events that occurred in Jezero crater and provide time constraints on the formation of the Jezero delta.

Mars 2020↗

Triple oxygen and hydrogen stable isotope composition of water in Murchison carbonaceous chondrite accessed by thermogravimetry-enabled laser spectroscopy

For this work, we have developed the capability to measure 17 O/ 16 O in H 2 O and OH - of hydrous minerals by a technique using thermogravimetric analysis coupled with isotope ratio infrared spectroscopy (TGA-IRIS) on a suite of liquid water standards, terrestrial mineral standards, multi-mineral synthetic mixtures of terrestrial samples, and Murchison carbonaceous chondrite. This 17 O/ 16 O analytical capability is combined with the previously developed TGA-IRIS capability of 18 O/ 16 O, which enables us to calculate Δ `17 O values. Additionally, we have made 2 H/ 1 H measurements by TGA-IRIS on the suite of materials. Analyses of 328 standard water samples sealed into silver tubes (0.25 μL, 174 VSMOW and 154 GISP) analyzed over the course of three years yielded δ 18 O values by TGA-IRIS with precision of ±0.30 ‰, δ 17 O of ±0.24 ‰, Δ `17 O of ±0.126 ‰, and δ 2 H ± 7.5 ‰ (± 1 Std. Dev.). TGA-IRIS analyses of a suite of hydrous minerals (oxy-hydroxide, mica, serpentines, sulfide, phyllosillicates) yields similar precision. TGA-IRIS analyses of the CM2 carbonaceous chondrite Murchison resulted in δ 18 O, δ 17 O, Δ `17 O, and δ 2 H values of the H 2 O and/or OH - from its hydrous minerals. Δ `17 O values of Murchison H 2 O range from 1.034 ‰ at 350 °C, to -0.368 ‰ at 650 °C, to -1.75 ‰ at 850 °C. TGA-IRIS can generate Δ `17 O values of H 2 O and/or OH - in hydrous materials that are well within the precision needed for the analysis of meteoritic samples, as well as samples returned from asteroids, such as Ryugu and Bennu.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

The NASA Exobiology Programme

NASA will indeed conduct a more active search for life beyond Earth. Research on the Martian meteorites will be augmented by $2 million to be contributed equally by NASA and NSF (National Science Foundation). The science strategy for the NASA Mars Surveyor Program now places a much higher priority on the search for life, particularly fossil evidence. This program features two launches per opportunity (every two years, starting this November). The focus on Exobiology emphasizes high resolution multispectral orbital mapping to locate key aqueous sedimentary minerals, the exploration of ancient terrains by capable rovers, and the need for multiple sample return missions. Additional information is contained within the original extended abstract.

DesMarais, David J.↗

Printable Spacecraft: Flexible Electronic Platforms for NASA Missions

Atmospheric confetti. Inchworm crawlers. Blankets of ground penetrating radar. These are some of the unique mission concepts which could be enabled by a printable spacecraft. Printed electronics technology offers enormous potential to transform the way NASA builds spacecraft. A printed spacecraft's low mass, volume and cost offer dramatic potential impacts to many missions. Network missions could increase from a few discrete measurements to tens of thousands of platforms improving areal density and system reliability. Printed platforms could be added to any prime mission as a low-cost, minimum resource secondary payload to augment the science return. For a small fraction of the mass and cost of a traditional lander, a Europa flagship mission might carry experimental printed surface platforms. An Enceladus Explorer could carry feather-light printed platforms to release into volcanic plumes to measure composition and impact energies. The ability to print circuits directly onto a variety of surfaces, opens the possibility of multi-functional structures and membranes such as "smart" solar sails and balloons. The inherent flexibility of a printed platform allows for in-situ re-configurability for aerodynamic control or mobility. Engineering telemetry of wheel/soil interactions are possible with a conformal printed sensor tape fit around a rover wheel. Environmental time history within a sample return canister could be recorded with a printed sensor array that fits flush to the interior of the canister. Phase One of the NIAC task entitled "Printable Spacecraft" investigated the viability of printed electronics technologies for creating multi-functional spacecraft platforms. Mission concepts and architectures that could be enhanced or enabled with this technology were explored. This final report captures the results and conclusions of the Phase One study. First, the report presents the approach taken in conducting the study and a mapping of results against the proposed Phase One objectives. Then an overview of the general field of printed electronics is provided, including manufacturing approaches, commercial drivers, and the current state of integrated systems. The bulk of the report contains the results and findings of Phase One organized into four sections: a survey of components required for a printable spacecraft, technology roadmaps considerations, science mission and engineering applications, and potential risks and challenges of the technology.

Spacecraft↗

Assessment of Alternative Europa Mission Architectures

The purpose of this study was to assess the science merit, technical risk and qualitative assessment of relative cost of alternative architectural implementations as applied to a first dedicated mission to Europa. The objective was accomplished through an examination of mission concepts resulting from previous and ongoing studies. Key architectural elements that were considered include moon orbiters, flybys (single flybys like New Horizons and multiple flybys similar to the ongoing Jupiter System Observer study), sample return and in situ landers and penetrators.

Juptier Icy Moon Orbiter (JIMO)↗

Optical System Design and Integration of the Global Ecosystem Dynamics Investigation Lidar

The Global Ecosystem Dynamics Investigation (GEDI) instrument was designed, built, and tested in-house at NASA’s Goddard Space Flight Center and launched to the International Space Station (ISS) on December 5, 2018. GEDI is a multi-beam waveform LiDAR (light detection and ranging) designed to measure the Earth’s global tree height and canopy density using 8 laser beam ground tracks separated by roughly 600 meters. Given the ground coverage required and the 2 year mission duration, a unique optical design solution was developed. GEDI generates 8 ground sampling tracks from 3 transmitter systems viewed by a single receiver telescope, all while maximizing system optical efficiency and transmitter to receiver boresight alignment margin. The GEDI optical design, key optical components, and system level integration and testing are presented here. GEDI began 2 years of science operations in March 2019 and so far, it is meeting all of its key optical performance requirements and is returning outstanding science.

Integration↗

Relative Detectability of Iron-Bearing Phases for the Mars 2020 Sherloc Deep UV Raman Instrument: 1. Focusing on Carbonates

A deep ultraviolet (DUV) Raman and fluorescence instrument is a surface standoff instrument mounted on the robotic arm of the Mars 2020 (M2020) rover Perseverance, and it is a key element of the Scanning Habitable Environments with Luminescence for Organics and Chemicals (SHERLOC) investigation [1]. Measurement and science objectives include mineralogical and organic images (~100 μm/pixel) that map sub-millimeter spatial distributions and characterization of primary and secondary minerals, potential organics, and their interaction/alteration products. The results of data analysis pertain to understanding igneous and alteration processes on Mars through time, assessing habitability, evidencing in situ biosignatures, and, along with results from other Perseverance instruments, selecting samples to cache for Mars sample return. Acceptance of the SHERLOC investigation for the NASA M2020 mission [2] created a need for Mars-relevant DUV Raman spectra, particularly for inorganic materials [e.g., 3, 4]. As reported previously [e.g., 4, 5], phases with Fe cations as essential elements (e.g., siderite (FeCO3) and ankerite (FeCa(CO3)2) for carbonates) significantly hinder detection by DUV Raman because of intense absorption of incident and scattered DUV laser radiation by Fe cations. We report here the relative detectability of carbonates (Mg,Ca,Fe,Mn)CO3 by DUV Raman using a SHERLOC analog laboratory instrument.

R V Morris↗