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At least 667 records · Page 37

RitR is an archetype for a novel family of redox sensors in the streptococci that has evolved from two-component response regulators and is required for pneumococcal colonization

To survive diverse host environments, the human pathogen Streptococcus pneumoniae must prevent its self-produced, extremely high levels of peroxide from reacting with intracellular iron. However, the regulatory mechanism(s) by which the pneumococcus accomplishes this balance remains largely enigmatic, as this pathogen and other related streptococci lack all known redox-sensing transcription factors. Here we describe a two-component-derived response regulator, RitR, as the archetype for a novel family of redox sensors in a subset of streptococcal species. We show that RitR works to both repress iron transport and enable nasopharyngeal colonization through a mechanism that exploits a single cysteine (Cys128) redox switch located within its linker domain. Biochemical experiments and phylogenetics reveal that RitR has diverged from the canonical two-component virulence regulator CovR to instead dimerize and bind DNA only upon Cys128 oxidation in air-rich environments. Atomic structures show that Cys128 oxidation initiates a “helical unravelling” of the RitR linker region, suggesting a mechanism by which the DNA-binding domain is then released to interact with its cognate regulatory DNA. Expanded computational studies indicate this mechanism could be shared by many microbial species outside the streptococcus genus.

59 BASIC BIOLOGICAL SCIENCES↗

Developing Cost Effective Biological Removal Technology for Selenium and Nitrate from Flue Gas Desulfurization Wastewater from an Existing Power Facility

Funding from this project supported new research in environmental biotechnology at WVSU Energy and Environmental Science Institute (WVSUEESI) to develop biological treatment techniques for FGD wastewater using photosynthetic organisms algae and plants. We tested the possibility of using algae and plants in treating FGD wastewater. Results suggested that algae and plants could able to perform normal photosynthesis under low concentrations of selenium. However, higher concentrations of selenium are lethal on photosynthesis. The total protein data indicated that FGD wastewater induced the accumulation of complete proteins in the duckweeds compared to control plants. It appears that nitrate, nitrates, and other compounds in FGD wastewater promote total protein accumulation. The FGD wastewater treatment has triggered Triacylglycerols (TAG) and carbohydrate accumulation in duckweed. We studied the differential gene expression using RNA-Sequencing data. Gene expression analysis revealed that glycolysis, fatty acid, triacylglycerol biosynthesis, and starch degradation were up-regulated; on the contrary, gluconeogenesis, photosynthesis, and starch biosynthesis genes were down-regulated by FGD wastewater treatment. We confirmed the expression of some of these genes using q-RT PCR analysis. We demonstrated that when FGD gypsum was blended with the coal mine soil to grow the bioenergy crop, Camelina, it could grow and produce seed. Moreover, Camelina is a non-edible oilseed crop and has heavy metal sequestering properties, making it the right reclamation choice. Besides, this project provided the opportunity for WVSU undergraduates to integrate hands-on research and education. Funding from this grant helped us to enhance student hands-on experience in water quality and environmental science and participation in STEM research and education.

09 BIOMASS FUELS↗

Morphological and Molecular Characterization of Punctodera stonei Brzeski, 1998 (Nematoda: Heteroderidae) from Virginia, USA

In August of 2021, several cysts with juveniles and eggs were discovered during a vegetation survey conducted at the Arlington National Cemetery, Virginia. Eight soil samples were collected from the rhizosphere region of the common grass (Festuca arundinacea L.) and processed at the Mycology and Nematology Genetic Diversity and Biology Laboratory (MNGDBL). Cysts were light to dark brown in color, and oval to pear-shaped without bullae in young cysts but present in older cysts and with prominent vulval cone. The juveniles had slightly concave stylet knobs projecting sometimes anteriorly, tail tapering gradually to a narrowly rounded terminus, and hyaline tail terminus conspicuous at least twice the length of stylet. The molecular analysis included the analysis of three gene sequence fragments: D2–D3 of 28S rRNA, ITS rRNA, and COI. The nematode species was identified by both morphological and molecular means as Stone's cyst nematode, Punctodera stonei. Detection of P. stonei in Virginia represents a new record of this species in the United States, and a second report after Canada in North America.

59 BASIC BIOLOGICAL SCIENCES↗

Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae

Geodermatophilaceae (order Geodermatophilales , class Actinobacteria ) form a comparatively isolated family within the phylum Actinobacteria and harbor many strains adapted to extreme ecological niches and tolerant against reactive oxygen species. Clarifying the evolutionary history of Geodermatophilaceae was so far mainly hampered by the insufficient resolution of the main phylogenetic marker in use, the 16S rRNA gene. In conjunction with the taxonomic characterisation of a motile and aerobic strain, designated YIM M13156 T and phylogenetically located within the family, we here carried out a phylogenetic analysis of the genome sequences now available for the type strains of Geodermatophilaceae and re-analyzed the previously assembled phenotypic data. The results indicated that the largest genus, Geodermatophilus , is not monophyletic, hence the arrangement of the genera of Geodermatophilaceae must be reconsidered. Taxonomic markers such as polar lipids and fatty-acids profile, cellular features and temperature ranges are indeed heterogeneous within Geodermatophilus . In contrast to previous studies, we also address which of these features can be interpreted as apomorphies of which taxon, according to the principles of phylogenetic systematics. We thus propose a novel genus, Klenkia, with the type species Klenkia marina sp. nov. and harboring four species formerly assigned to Geodermatophilus , G. brasiliensis , G. soli , G. taihuensis , and G. terrae . Emended descriptions of all species of Geodermatophilaceae are provided for which type-strain genome sequences are publicly available. Our study again demonstrates that the principles of phylogenetic systematics can and should guide the interpretation of both genomic and phenotypic data.

59 BASIC BIOLOGICAL SCIENCES↗

A Universally Primed-Polymerase Chain Reaction (UP-PCR) Marker to Discriminate Clonostachys rosea ACM941 from Related Strains

Clonostachys rosea strain ACM941 is an effective biocontrol agent against several crop diseases including Fusarium head blight. In anticipation of its increased relevance going forward, the development of a reliable DNA-based molecular marker to track it is essential. Universally primed-PCR (UP-PCR) has been used successfully to differentiate other C. rosea strains. Herein, the development of a UP-PCR marker for ACM941 is described. A combination of two primers (AS15 and L45) produced a ~450 bp fragment that was unique to ACM941 compared to other commercial biocontrol agents. Primers subsequently designed based on the obtained fragment also produced a similarly unique band from ACM941 alone. BLAST analysis of the amplified sequence did not yield any homologous sequence in available online databases or within the closely related C. rosea IK726 and CBS125111 strains’ genomes. The specificity of this marker for ACM941 was validated against ten additional C. rosea strains isolated from Canada, with ACM941 producing the brightest band. Taken together, these results imply that the UP-PCR primers AS15 and L45 and the amplified fragment can be used to detect and monitor the ACM941 strain after its release into the environment.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

The State-of-the-art HST Astro-photometric Analysis of the Core of ω Centauri. III. The Main Sequence's Multiple Populations Galore

We take advantage of the exquisite quality of the Hubble Space Telescope 26-filter astro-photometric catalog of the core of ω Cen presented in the first paper of this series and the empirical differential-reddening correction presented in the second paper in order to distill the main sequence into its constituent populations. To this end, we restrict ourselves to the five most useful filters: the magic “trio” of F275W, F336W, and F438W, along with F606W and F814W. We develop a strategy for identifying color systems where different populations stand out most distinctly, then we isolate those populations and examine them in other filters where their subpopulations also come to light. In this way, we have identified at least 15 subpopulations, each of which has a distinctive fiducial curve through our five-dimensional photometric space. We confirm the MSa to be split into two subcomponents, and find that both the bMS and the rMS are split into three subcomponents. Moreover, we have discovered two additional MS groups: the MSd (which has three subcomponents) shares similar properties with the bMS, and the MSe (which has four subcomponents) has properties more similar to those of the rMS. We examine the fiducial curves together and use synthetic spectra to infer relative heavy-element, light-element, and helium abundances for the populations. Our findings show that the stellar populations and star formation history of ω Cen are even more complex than inferred previously. Finally, we provide as a supplement to the original catalog a list that identifies for each star which population it is most likely associated with.

79 ASTRONOMY AND ASTROPHYSICS↗

Clinical application of a light-pen computer system for quantitative angiography

The paper describes an angiographic analysis system which uses a video disk for recording and playback, a light-pen for data input, minicomputer processing, and an electrostatic printer/plotter for hardcopy output. The method is applied to quantitative analysis of ventricular volumes, sequential ventriculography for assessment of physiologic and pharmacologic interventions, analysis of instantaneous time sequence of ventricular systolic and diastolic events, and quantitation of segmental abnormalities. The system is shown to provide the capability for computation of ventricular volumes and other measurements from operator-defined margins by greatly reducing the tedium and errors associated with manual planimetry.

Alderman, E. L.↗

The augmentation algorithm and molecular phylogenetic trees

Moore's (1977) augmentation procedure is discussed, and it is concluded that the procedure is valid for obtaining estimates of the total number of fixed nucleotide substitutions both theoretically and in practice, for both simulated and real data, and in agreement, for experimentally dense data sets, with stochastic estimates of the divergence, provided the restrictions on codon mutability resulting from natural selection are explicitly allowed for. Tateno and Nei's (1978) critique that the augmentation procedure has a systematic bias toward overestimation of the total number of nucleotide replacements is disputed, and a data analysis suggests that ancestral sequences inferred by the method of parsimony contain a large number of incorrectly assigned nucleotides.

Holmquist, R.↗

Atmospheric media effects on ARIES baseline determination

Different types of media effects on ARIES baseline determination are compared. The effectiveness of simple ionospheric calibration models are studied. To perform the covariance analysis, an ARIES observation sequence needs to be assumed. For the current purposes, the observation sequence is selected to be that of experiment 80D over the JPL/Goldstone baseline (approximately 180 km). This experiment consisted of 96 observations over a period of approximately 25 hours on March 25 to 26, 1980. It is found through covariance analyses that the component most sensitive to media depends heavily upon the correlation, between the two stations, of the media effects. It is also found that relying on the cancellation of ionospheric delays between the two ray paths of VLBI observations at S band results in a large error in baseline length determination. High degree removal of ionospheric effects is possible with a crude model, providing correct diurnal peak and minimum ionospheric levels are input.

Wu, S. C.↗

Solar cells and modules from dentritic web silicon

Some of the noteworthy features of the processes developed in the fabrication of solar cell modules are the handling of long lengths of web, the use of cost effective dip coating of photoresist and antireflection coatings, selective electroplating of the grid pattern and ultrasonic bonding of the cell interconnect. Data on the cells is obtained by means of dark I-V analysis and deep level transient spectroscopy. A histogram of over 100 dentritic web solar cells fabricated in a number of runs using different web crystals shows an average efficiency of over 13%, with some efficiencies running above 15%. Lower cell efficiency is generally associated with low minority carrier time due to recombination centers sometimes present in the bulk silicon. A cost analysis of the process sequence using a 25 MW production line indicates a selling price of $0.75/peak watt in 1986. It is concluded that the efficiency of dentritic web cells approaches that of float zone silicon cells, reduced somewhat by the lower bulk lifetime of the former.

Campbell, R. B.↗

Design of the stift time and frequency transfer microwave ground terminal

The Satellite Time and Frequency Transfer System is intended to provide, simultaneously, global time comparisons at the subnanosecond level and frequency comparisons to better than 1 part in 10 to the 14th power. It utilizes an orbiting hydrogen maser clock and frequency standard that communicates, via microwave links, time and frequency information to Earth terminals operated by hydrogen masers controlling local clocks. A two-way microwave link, to and from the space vehicle provides Doppler information used to cancel the Doppler shifts in a one-way link from the spaceborne oscillator. Pseudo-random noise (PRN) modulation in the two-way link also provides range information to cancel the range delay in the PRN time transfer between space and Earth. The pseudo-random noise modulation system for time difference measurement and its incorporation in the Doppler cancellation system for frequency comparison is explained. The particular PRN code sequence selected and an analysis of the system is discussed.

Penfield, H.↗

Observing system simulation experiments related to space-borne Lidar wind profiling. Part 1: Forecast impacts of highly idealized observing systems

Simulation experiments comparing the relative importance of an idealized LIDAR wind profiling system with idealized temperature and pressure sounding systems on 12 h forecasts are studied for three "nature' fields representing the true evolving atmospheric states. The three fields are obtained respectively from: (1) a long integration of the GLAS 4th Order Model (4 deg lat x 5 deg lon x 9 levels), (2) a continuous sequence of NMC operational analysis and, (3) a long integration of the ECMWF high resolution (1.875 deg 1 lat x 1.875 deg lon x 15 layers) operational forecast model. These fields are interpolated to the grid of the GLAS model and used for simulating the observed global analysed fields of winds, temperature, moisture and surface pressure. The same interpolated fields are also used for verification of forecast impact. The effects of clouds, aerosol concentrations, and instrument accuracies on the simulated observation will be discussed.

Halem, M.↗

Planetary Fabry-Perot spectroscopy

Uranus and Jupiter HD/H2 spectra determine bulk D/H ratios which are significantly different from theoretical expectations, with the Uranus D/H about half the Jovian value. Feasibility of Mars photochemistry study with a PEPSIOS spectrometer was demonstrated with visible band O2, H2O, and CO2 spectra; and near infrared (1.57 micron) spectra of CO and CO2; and NASA/IRTF observations have been proposed in support of the Mars Observer mission objectives. Analysis of monochromatic images clearly resolve the azimuthal and radial structure in the Jovian nebula (ion partitioning, temperature structure, ion/neutral interactions), adding a unique and important post-Voyager perspective and providing a baseline for forthcoming Galileo experiments. Simultaneous ground based and IUE observations of Jovian nebula are under analysis. Doppler resolved image sequences (data cubes) of Io sodium neutrals clearly isolate the high velocity charge exchange jet, a sensitive ground-based probe of the tenuous neutral atmosphere of Io.

Trauger, J. T.↗

A NASTRAN primer for the analysis of rotating flexible blades

This primer provides documentation for using MSC NASTRAN in analyzing rotating flexible blades. The analysis of these blades includes geometrically nonlinear (large displacement) analysis under centrifugal loading, and frequency and mode shape (normal modes) determination. The geometrically nonlinear analysis using NASTRAN Solution sequence 64 is discussed along with the determination of frequencies and mode shapes using Solution Sequence 63. A sample problem with the complete NASTRAN input data is included. Items unique to rotating blade analyses, such as setting angle and centrifugal softening effects are emphasized.

Lawrence, Charles↗

Digital enhancement of flow field images

Most photographs of experimentally generated fluid flow fields have inherently poor photographic quality, specifically low contrast. Thus, there is a need to establish a process for quickly and accurately enhancing these photographs to provide improved versions for physical interpretation, analysis, and publication. A sequence of digital image processing techniques which have been demonstrated to effectively enhance such photographs is described.

Kudlinski, Robert A.↗

Model Based Vision for Aircraft Position Determination

This paper investigates the use of imaging sensors to estimate the position of an aircraft with respect to the runway during landing. Passive vision techniques to estimate aircraft position during landing rely on the known runway model, images acquired by onboard imaging sensor, orientation information provided by the inertial navigation system and the position estimate provided by devices such as the global positioning system. Point features in the runway model are compared with the onboard sensor images of the features and the difference between the two is used to correct the aircraft position and orientation. In this paper the sensitivity of point features is examined as a means of determining the accuracy of such position estimation techniques. Expressions are derived for the sensitivity of image point to errors in the position and orientation of the sensor. Using these, the sensitivity of the image to aircraft position and orientation errors along a typical landing glide path is studied. A least squares technique based on this sensitivity analysis is described for the correction of position and orientation estimates. The final version of the paper will include results from the application of this analysis to real image sequences collected in flight.

Sridhar, Banavar↗

Long-term Global Morphology of Gravity Wave Activity Using UARS Data

This quarter was largely devoted to a detailed study of temperature data acquired by the Cryogenic Limb Array Etalon Spectrometer (CLAES) on UARS. Our analysis used the same sequence of methods that have been developed, tested and refined on a more limited subset of temperature data acquired by the CRISTA instrument. We focused on a limited subset of our reasoning that geographical and vertical trends in the small-scale temperature variability could be compared with similar trends observed in November 1994 by the CRISTA-SPAS satellite. Results, backed up with hindcasts from the Mountain Wave Forecast Model (MWFM), reveal strong evidence of mountain waves, most persuasively in the Himalayas on 16-17 November, 1992. These CLAES results are coherent over the 30-50 km range and compare well with MWFM hindcasts for the same period. This constitutes, we believe, the first clear evidence that CLAES explicitly resolved long wavelength gravity waves in its CO2 temperature channel. A series of other tasks, related to mesoscale modeling of mountain waves in CRISTA data and fitting of ground-based and HRDI data on global scales, were seen through to publication stage in peer-reviewed journals.

Eckermann, Stephen D.↗