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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 685 records · Page 38

NANO.PTML model for read-across prediction of nanosystems in neurosciences. computational model and experimental case of study

Abstract Neurodegenerative diseases involve progressive neuronal death. Traditional treatments often struggle due to solubility, bioavailability, and crossing the Blood-Brain Barrier (BBB). Nanoparticles (NPs) in biomedical field are garnering growing attention as neurodegenerative disease drugs (NDDs) carrier to the central nervous system. Here, we introduced computational and experimental analysis. In the computational study, a specific IFPTML technique was used, which combined Information Fusion (IF) + Perturbation Theory (PT) + Machine Learning (ML) to select the most promising Nanoparticle Neuronal Disease Drug Delivery (N2D3) systems. For the application of IFPTML model in the nanoscience, NANO.PTML is used. IF-process was carried out between 4403 NDDs assays and 260 cytotoxicity NP assays conducting a dataset of 500,000 cases. The optimal IFPTML was the Decision Tree (DT) algorithm which shown satisfactory performance with specificity values of 96.4% and 96.2%, and sensitivity values of 79.3% and 75.7% in the training (375k/75%) and validation (125k/25%) set. Moreover, the DT model obtained Area Under Receiver Operating Characteristic (AUROC) scores of 0.97 and 0.96 in the training and validation series, highlighting its effectiveness in classification tasks. In the experimental part, two samples of NPs (Fe 3 O 4 _A and Fe 3 O 4 _B) were synthesized by thermal decomposition of an iron(III) oleate (FeOl) precursor and structurally characterized by different methods. Additionally, in order to make the as-synthesized hydrophobic NPs (Fe 3 O 4 _A and Fe 3 O 4 _B) soluble in water the amphiphilic CTAB (Cetyl Trimethyl Ammonium Bromide) molecule was employed. Therefore, to conduct a study with a wider range of NP system variants, an experimental illustrative simulation experiment was performed using the IFPTML-DT model. For this, a set of 500,000 prediction dataset was created. The outcome of this experiment highlighted certain NANO.PTML systems as promising candidates for further investigation. The NANO.PTML approach holds potential to accelerate experimental investigations and offer initial insights into various NP and NDDs compounds, serving as an efficient alternative to time-consuming trial-and-error procedures.

60 APPLIED LIFE SCIENCES↗

When does global attention help: a unified empirical study on atomistic graph learning

Graph neural networks (GNNs) are widely used as surrogates for costly experiments and first-principles simulations to study the behavior of compounds at atomistic scale, and their architectural complexity is constantly increasing to enable the modeling of complex physics. While most recent GNNs combine more traditional message passing neural networks (MPNNs) layers to model short-range interactions with more advanced graph transformers (GTs) with global attention mechanisms to model long-range interactions, it is still unclear when global attention mechanisms provide real benefits over well-tuned MPNN layers due to inconsistent implementations, features, or hyperparameter tuning. We introduce the first unified, reproducible benchmarking framework–built on HydraGNN–that enables seamless switching among four controlled model classes: MPNN, MPNN with chemistry/topology encoders, GPS-style hybrids of MPNN with global attention, and fully fused localglobal models with encoders. Using seven diverse open-source datasets for benchmarking across regression and classification tasks, we systematically isolate the contributions of message passing, global attention, and encoder-based feature augmentation. Our study shows that encoder-augmented MPNNs form a robust baseline, while fused localglobal models yield the clearest benefits for properties governed by long-range interaction effects. We further quantify the accuracycompute trade-offs of attention, reporting its overhead in memory. Together, these results establish the first controlled evaluation of global attention in atomistic graph learning and provide a reproducible testbed for future model development.

Equivariant graph neural networks↗

Identification of shared viral sequences in peat moss metagenomes reveals elements of a possible Sphagnum core virome

Viruses are an understudied component of plant microbiomes. Identifying viruses that are shared between individual plants, or members of the “core virome”, could reveal stable viral populations with the potential to modulate the composition and function of the microbiome. Here, we examined the virome associated with Sphagnum mosses, a keystone species that has direct influence over the fate of peatland carbon stores. We analyzed bulk metagenomes and metatranscriptomes generated from Sphagnum field samples collected over a ten-month period to identify virus-like sequences shared among plants. Individual Sphagnum samples harbored distinct DNA and RNA viromes where only a small percentage (< 1%) of the total number of identified viral contigs were shared among all samples. Based on taxonomic classification, the shared viral contigs represent bacterial viruses, or phage (Caudoviricetes), as well as viruses of eukaryotes, namely nucleocytoplasmic large DNA viruses (Nucleocytoviricota) and RNA viruses (Riboviria). We linked the shared phage-like contigs to viral regions within sequenced genomes of bacterial taxa that are members of the Sphagnum core microbiome, suggesting that these contigs represent temperate phage or degraded prophage. The putative nucleocytoplasmic large DNA viruses and RNA viruses were phylogenetically diverse and showed sequence similarity to viruses associated with a broad range of hosts and environmental sources. The identification of shared viral contigs suggested that, despite the compositional heterogeneity between samples, Sphagnum mosses may harbor a core virome. Future work validating the presence of the core virome is warranted as it may aid in understanding how persistent viruses impact microbiome ecology and symbiont evolution within this climatically relevant keystone species.

Metagenomics↗

Multi-contrast machine learning improves schistosomiasis diagnostic performance

Schistosomiasis currently affects over 250 million people and remains a public health burden despite ongoing global control efforts. Conventional microscopy is a practical tool for diagnosis and screening ofSchistosoma haematobium, but identification of eggs requires a skilled microscopist. Here we present a machine learning (ML)-based strategy for automated detection ofS. haematobiumthat combines two imaging contrasts, brightfield (BF) and darkfield (DF), to improve diagnostic performance. We collected BF and DF images of urine samples, many of them containingS. haematobiumeggs, during two different field studies in Côte d’Ivoire using a mobile phone-based microscope, the SchistoScope. We then trained separate egg-detection ML models and compared the patient-level performance of BF and DF models alone to combinations of BF and DF models, using annotations from trained microscopists as the gold standard. We found that models trained on DF images, and almost all BF and DF combinations, performed significantly better than models trained on BF images only. When models were trained on images from the first field study (n = 349 patients, 748 images of each contrast), patient-level classification performance on patient images from the second study (n = 375 patients, 752 images of each contrast) met the WHO Diagnostic Target Product Profile (TPP) sensitivity and specificity for the monitoring and evaluation use case (sensitivity for all models and combinations was >75% when evaluated at a confidence score threshold that resulted in specificity >96.5%). When we used images from both field studies for the training set, performance of the models was improved. Overall, this work shows that the use of DF and BF increases the performance of ML models on images from devices with low-cost optics, while retaining the portability, power, and time-to-results of the WHO’s diagnostic TPP. DF requires no additional sample preparation and does not increase the complexity of the imaging system. It thus offers a practical means to improve performance of automated diagnostics forS. haematobiumas well as other microscopy-based diagnostics.

Infectious Diseases↗

Evaluation of an autonomous acoustic surveying technique for grassland bird communities in Nebraska

Monitoring trends in wildlife communities is integral to making informed land management decisions and applying conservation strategies. Birds inhabit most niches in every environment and because of this they are widely accepted as an indicator species for environmental health. Traditionally, point counts are the common method to survey bird populations, however, passive acoustic monitoring approaches using autonomous recording units have been shown to be cost-effective alternatives to point count surveys. Advancements in automatic acoustic classification technologies, such as BirdNET, can aid in these efforts by quickly processing large volumes of acoustic recordings to identify bird species. While the utility of BirdNET has been demonstrated in several applications, there is little understanding of its effectiveness in surveying declining grassland birds. We conducted a study to evaluate the performance of BirdNET to survey grassland bird communities in Nebraska by comparing this automated approach to point count surveys. We deployed ten autonomous recording units from March through September 2022: five recorders in row-crop fields and five recorders in perennial grassland fields. During this study period, we visited each site three times to conduct point count surveys. We compared focal grassland bird species richness between point count surveys and the autonomous recording units at two different temporal scales and at six different confidence thresholds. Total species richness (focal and non-focal) for both methods was also compared at five different confidence thresholds using species accumulation curves. The results from this study demonstrate the usefulness of BirdNET at estimating long-term grassland bird species richness at default confidence scores, however, obtaining accurate abundance estimates for uncommon bird species may require validation with traditional methods.

59 BASIC BIOLOGICAL SCIENCES↗

Identifying microbial functional guilds performing cryptic organotrophic and lithotrophic redox cycles in anaerobic granular biofilms

Granular biofilms used in anaerobic digester systems contain diverse microbial populations that interact to hydrolyze organic matter and produce methane within controlled environments. Prior research investigated the feasibility of utilizing granular biofilms obtained from an anaerobic digester to remove nitrate without the addition of exogenous electron donors. These granules possessed a unique structure of alternating light and dark iron sulfide and pyrite rich layers that potentially served as both an electron source and sink, linking carbon, nitrogen, sulfur, and iron cycles. To characterize the functional roles of diverse microbial populations enriched within these layered biofilms, we analyzed metagenomes obtained from three different granules. Comparisons between the functional gene content of forty metagenome assembled genomes (MAGs) identified phylogenetically cohesive functional guilds. Each of these functional MAG clusters was assigned to specific steps in anaerobic digestion (hydrolysis, acidogenesis, acetogenesis, and methanogenesis) and anaerobic respiration (denitrification and sulfate reduction). Comparisons with metagenomes derived from a variety of natural and engineered ecosystems confirmed that the enriched denitrifying bacteria were similar to populations typically found in wetlands and biological nitrogen removal systems. Analysis of read alignments to individual genes within the forty MAGs identified conserved genomic features that were representative of the functions that distinguished functional guilds. Overall, this research illustrates the utility of functional based classification of microorganisms for characterizing ecosystem functions and highlights the potential application of engineered ecosystems to serve as experimental models for complex natural ecosystems.

Ecosystem engineering↗

Impact of hydropower availability on resource adequacy of the United States western interconnection

Hydropower is a key energy source in the western interconnection of the United States, comprising about 25% of the annual installed nameplate capacity in 2020. However, its generation is increasingly impacted by changing hydrological conditions, operational constraints, environmental factors, water availability, and aging dam infrastructure. Assessing hydropower availability and resource adequacy is valuable for shaping energy policies and infrastructure requirements. In this study we evaluate the sensitivity of resource adequacy in the Western Interconnection to the unavailability of hydropower plants, under a wide-ranging set of 16,384 hydropower loss scenarios derived from a combination of 14 major hydrologic regions. Although a complete loss of hydropower capacity in any region is unlikely, studying such scenarios helps in identifying hydrologic regions most critical for maintaining resource adequacy. So, we identify key hydrologic regions with disproportionately large adequacy impacts relative to their installed hydropower capacity and study compounding effects between regions using classification and regression trees. Even after controlling for total installed capacity, we find that hydropower resources in the Pacific Northwest contribute the most to interconnection-wide adequacy outcomes, with resources in Northern California and the Desert Southwest providing more moderate incremental contributions.

13 HYDRO ENERGY↗

The two radiative states of the Arctic atmosphere and their impacts on the surface energy budget of sea ice

The surface energy budget (SEB) is a central regulator of Arctic climate and sea ice evolution, yet its processes remain poorly constrained due to sparse observations and complex, coupled surface-atmosphere interactions. This study leverages year-long measurements from the Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) to provide the most comprehensive assessment to date of the central Arctic SEB and its modulation by atmospheric variability. Ship- and ice-based observations from October 2019 to September 2020 were used to directly measure or tightly constrain each term of the SEB, leading to exceptional energetic closure with the seasonal snow and ice mass balance. The analysis reveals strong seasonal transitions in atmosphere-surface energy transfer that are modulated by the atmospheric state and constrained by the ability of the surface temperature to respond. Classification of the atmosphere into its two dominant radiative states—the semi-transparent (ST) and opaque (OP)—highlights the central role of synoptic-scale variability in clouds. The ST atmospheric state dominated the long winter ice growth season, with limited cloudiness supporting persistent surface radiative cooling and ice growth. The OP state, associated with liquid-containing or thick ice clouds, became dominant in spring, with the combination of increased solar heating and cloud surface longwave warming driving ice and snow melt. Eddy covariance versus bulk approaches for deriving surface turbulent heat fluxes provide vastly different perspectives on the role of turbulence in modulating the SEB. These results establish a high-quality benchmark dataset for Arctic SEB studies and demonstrate how the balance of atmospheric radiative states exerts a first-order control on the annual evolution of the sea ice. The findings have broad implications for advancing observing technologies, understanding Arctic amplification, improving climate models, and predicting future sea ice change.

54 ENVIRONMENTAL SCIENCES↗

Raw Lidar and Camera Data Synchronized with Precipitation and Present Weather Data

As part of the sensor characterization task of the SMART 2.0 project, this dataset includes raw data from three spinning lidars ([Ouster OS2-128](https://ouster.com/products/scanning-lidar/os2-sensor/), [Velodyne Puck (VLP-16)](https://velodynelidar.com/products/puck/), and [Velodyne Ultra Puck (VLP-32)](https://velodynelidar.com/products/ultra-puck/)), one camera ([Mako G-319](https://www.alliedvision.com/en/camera-selector/detail/mako/g-319/)), and one present weather sensor ([Vaisala FD-70](https://www.vaisala.com/en/products/weather-environmental-sensors/forward-scatter-fd70)). All data were synchronized, with the log start time indicated in the file name (HHMMSS). The data can be filtered by date, log time (HHMMSS), sensor, frame ID, and weather classification. These data were gathered statically at the Argonne Testbed for Multiscale Observational Science (ATMOS). Two target stop signs were placed in view of the sensors to contribute a target for comparing sensor data under different conditions. The weather data for each day are stored in netCDF “.nc” files. The lidar data contain the X, Y, Z, intensity, reflectivity, and ring from Ouster OS2-128 rev6, Velodyne VLP-16, and Velodyne VLP-32 lidars. ![raw lidar image](LiDAR_pointcloud_ATMOS.png)

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Automated Vehicle Feasibility Study

This study collected automated vehicle (AV) performance data on public roadways in Athens, Ohio. The route for the study contained a combination of roads with different functional classifications, conditions, annual average daily traffic, and ownership responsibilities for maintenance and repair. Preparation for the public road deployment was done in a controlled environment at Transportation Research Center’s SMARTCenter, a dedicated AV test facility in East Liberty, Ohio. Researchers analyzed data and extracted insights relevant for both AV developers and infrastructure owners and operators. The study found that rural environments offer a unique set of roadway features such as hills and curves, which can challenge the driving behavior of an AV. Rural regions can also contain a large number of low-traffic gravel roads that lack pavement markings, which appear to be a crucial infrastructure element for operation of current generation AVs. Similarly, the presence of well-maintained lane lines along curves can influence the AV’s roadway departure tendencies. The study found that curvature-related behavior of an AV is also influenced by driving speed on the roadway segment. Such findings were consistent regardless of the time of day along the route or season of data collection. However, commentary about AV performance in active adverse weather cannot be made, as this is still an area of active research.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

2013 Metropolitan Area Planning Agency External Travel Survey

# 2013 Metropolitan Area Planning Agency External Travel Survey The 2013 Metropolitan Area Planning Agency (MAPA) External Travel Survey was conducted to measure and identify travel patterns into, within, and out of the greater Omaha/Council Bluffs metropolitan area in Nebraska. MAPA sponsored the survey in conjunction with the Federal Highway Administration, the Nebraska Department of Roads, and the Iowa Department of Transportation. ## Data Collection Agency MAPA conducted the survey. ## Methodology The purpose of the survey was to collect information and data needed as input for MAPA’s travel-demand model. The survey employed a combination of nine survey methods and data-collection activities, including Bluetooth technology, intercept surveys, postcard handouts, travel-time studies, vehicle classification counts, and a web-based survey. ## Survey Records Survey records include a total of 729 participants. ## Transportation Data This study provides Bluetooth records and supplementary data for 17,434 passenger trips and 3,123 commercial trips, accounting for 714,218 vehicle miles traveled. Transportation data are available as zipped files. [Download Winzip](http://www.winzip.com/downwz.htm).

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

2013 Metropolitan Area Planning Agency External Travel Survey

# 2013 Metropolitan Area Planning Agency External Travel Survey The 2013 Metropolitan Area Planning Agency (MAPA) External Travel Survey was conducted to measure and identify travel patterns into, within, and out of the greater Omaha/Council Bluffs metropolitan area in Nebraska. MAPA sponsored the survey in conjunction with the Federal Highway Administration, the Nebraska Department of Roads, and the Iowa Department of Transportation. ## Data Collection Agency MAPA conducted the survey. ## Methodology The purpose of the survey was to collect information and data needed as input for MAPA’s travel-demand model. The survey employed a combination of nine survey methods and data-collection activities, including Bluetooth technology, intercept surveys, postcard handouts, travel-time studies, vehicle classification counts, and a web-based survey. ## Survey Records Survey records include a total of 729 participants. ## Transportation Data This study provides Bluetooth records and supplementary data for 17,434 passenger trips and 3,123 commercial trips, accounting for 714,218 vehicle miles traveled. Transportation data are available as zipped files. [Download Winzip](http://www.winzip.com/downwz.htm).

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

2013 Metropolitan Area Planning Agency External Travel Survey

# 2013 Metropolitan Area Planning Agency External Travel Survey The 2013 Metropolitan Area Planning Agency (MAPA) External Travel Survey was conducted to measure and identify travel patterns into, within, and out of the greater Omaha/Council Bluffs metropolitan area in Nebraska. MAPA sponsored the survey in conjunction with the Federal Highway Administration, the Nebraska Department of Roads, and the Iowa Department of Transportation. ## Data Collection Agency MAPA conducted the survey. ## Methodology The purpose of the survey was to collect information and data needed as input for MAPA’s travel-demand model. The survey employed a combination of nine survey methods and data-collection activities, including Bluetooth technology, intercept surveys, postcard handouts, travel-time studies, vehicle classification counts, and a web-based survey. ## Survey Records Survey records include a total of 729 participants. ## Transportation Data This study provides Bluetooth records and supplementary data for 17,434 passenger trips and 3,123 commercial trips, accounting for 714,218 vehicle miles traveled. Transportation data are available as zipped files. [Download Winzip](http://www.winzip.com/downwz.htm).

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

2013 Metropolitan Area Planning Agency External Travel Survey

# 2013 Metropolitan Area Planning Agency External Travel Survey The 2013 Metropolitan Area Planning Agency (MAPA) External Travel Survey was conducted to measure and identify travel patterns into, within, and out of the greater Omaha/Council Bluffs metropolitan area in Nebraska. MAPA sponsored the survey in conjunction with the Federal Highway Administration, the Nebraska Department of Roads, and the Iowa Department of Transportation. ## Data Collection Agency MAPA conducted the survey. ## Methodology The purpose of the survey was to collect information and data needed as input for MAPA’s travel-demand model. The survey employed a combination of nine survey methods and data-collection activities, including Bluetooth technology, intercept surveys, postcard handouts, travel-time studies, vehicle classification counts, and a web-based survey. ## Survey Records Survey records include a total of 729 participants. ## Transportation Data This study provides Bluetooth records and supplementary data for 17,434 passenger trips and 3,123 commercial trips, accounting for 714,218 vehicle miles traveled. Transportation data are available as zipped files. [Download Winzip](http://www.winzip.com/downwz.htm).

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

2013 Metropolitan Area Planning Agency External Travel Survey

# 2013 Metropolitan Area Planning Agency External Travel Survey The 2013 Metropolitan Area Planning Agency (MAPA) External Travel Survey was conducted to measure and identify travel patterns into, within, and out of the greater Omaha/Council Bluffs metropolitan area in Nebraska. MAPA sponsored the survey in conjunction with the Federal Highway Administration, the Nebraska Department of Roads, and the Iowa Department of Transportation. ## Data Collection Agency MAPA conducted the survey. ## Methodology The purpose of the survey was to collect information and data needed as input for MAPA’s travel-demand model. The survey employed a combination of nine survey methods and data-collection activities, including Bluetooth technology, intercept surveys, postcard handouts, travel-time studies, vehicle classification counts, and a web-based survey. ## Survey Records Survey records include a total of 729 participants. ## Transportation Data This study provides Bluetooth records and supplementary data for 17,434 passenger trips and 3,123 commercial trips, accounting for 714,218 vehicle miles traveled. Transportation data are available as zipped files. [Download Winzip](http://www.winzip.com/downwz.htm).

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

2013 Metropolitan Area Planning Agency External Travel Survey

# 2013 Metropolitan Area Planning Agency External Travel Survey The 2013 Metropolitan Area Planning Agency (MAPA) External Travel Survey was conducted to measure and identify travel patterns into, within, and out of the greater Omaha/Council Bluffs metropolitan area in Nebraska. MAPA sponsored the survey in conjunction with the Federal Highway Administration, the Nebraska Department of Roads, and the Iowa Department of Transportation. ## Data Collection Agency MAPA conducted the survey. ## Methodology The purpose of the survey was to collect information and data needed as input for MAPA’s travel-demand model. The survey employed a combination of nine survey methods and data-collection activities, including Bluetooth technology, intercept surveys, postcard handouts, travel-time studies, vehicle classification counts, and a web-based survey. ## Survey Records Survey records include a total of 729 participants. ## Transportation Data This study provides Bluetooth records and supplementary data for 17,434 passenger trips and 3,123 commercial trips, accounting for 714,218 vehicle miles traveled. Transportation data are available as zipped files. [Download Winzip](http://www.winzip.com/downwz.htm).

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

2013 Metropolitan Area Planning Agency External Travel Survey

# 2013 Metropolitan Area Planning Agency External Travel Survey The 2013 Metropolitan Area Planning Agency (MAPA) External Travel Survey was conducted to measure and identify travel patterns into, within, and out of the greater Omaha/Council Bluffs metropolitan area in Nebraska. MAPA sponsored the survey in conjunction with the Federal Highway Administration, the Nebraska Department of Roads, and the Iowa Department of Transportation. ## Data Collection Agency MAPA conducted the survey. ## Methodology The purpose of the survey was to collect information and data needed as input for MAPA’s travel-demand model. The survey employed a combination of nine survey methods and data-collection activities, including Bluetooth technology, intercept surveys, postcard handouts, travel-time studies, vehicle classification counts, and a web-based survey. ## Survey Records Survey records include a total of 729 participants. ## Transportation Data This study provides Bluetooth records and supplementary data for 17,434 passenger trips and 3,123 commercial trips, accounting for 714,218 vehicle miles traveled. Transportation data are available as zipped files. [Download Winzip](http://www.winzip.com/downwz.htm).

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗