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Trilinos Developers SQE Guide: ASC Software Quality Engineering Practices Version 3.0

The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented software framework for the solution of large-scale, complex multi-physics engineering and scientific problems. A new software capability is introduced into Trilinos as a package. A Trilinos package is an integral unit and, although there are exceptions such as utility packages, each package is typically developed by a small team of experts in a particular algorithms area such as algebraic preconditioners, nonlinear solvers, etc. The Trilinos Developers SQE Guide is a resource for Trilinos package developers who are working under Advanced Simulation and Computing (ASC) and are therefore subject to the ASC Software Quality Engineering Practices as described in the Sandia National Laboratories Advanced Simulation and Computing (ASC) Software Quality Plan: ASC Software Quality Engineering Practices Version 3.0 document. The Trilinos Developer Policies webpage contains a lot of detailed information that is essential for all Trilinos developers. The Trilinos Software Lifecycle Model defines the default lifecycle model for Trilinos packages and provides a context for many of the practices listed in this document.

Willenbring, James Michael↗

Efficient Integration of Algebraic Constraint for Exponential Time Integration

This work is a continuation of a previous project where the high efficiency of exponential integration methods for DRMHD systems was demonstrated. Often algebraic constraints must also be enforced for DRMHD systems of interest. Straightforward application of exponential methods to DRMHD equations with constraints leads to prohibitively computationally expensive methods. In this work, we propose new exponential schemes that allow the constraints to be removed from evaluation of exponential matrix functions which drastically reduces computational complexity by eliminating the need to perform computations enforcing constraints in exponential calculations while still preserving a high order of accuracy and allowing for a large time step even when the problem is stiff. This idea is similar to the W-methods and is achieved by carefully designing a method with the desired order of accuracy, even with an incomplete Jacobian matrix used as an argument of exponential-like functions. The constraints are accounted for by including them in the evaluation of the right-hand-side forcing function of the spatially discretized system. We study performance of the new methods on test problems and outline future research directions that this work opens.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Non-commutative disintegrations: Existence and uniqueness in finite dimensions

Motivated by advances in categorical probability, we introduce non-commutative almost everywhere (a.e.) equivalence and disintegrations in the setting of C*-algebras. We show that C*-algebras (resp. W*-algebras) and a.e. equivalence classes of 2-positive (resp. positive) unital maps form a category. We prove non-commutative disintegrations are a.e. unique whenever they exist. We provide an explicit characterization for when disintegrations exist in the setting of finite-dimensional C*-algebras, and we give formulas for the associated disintegrations.

97 MATHEMATICS AND COMPUTING↗

Dynamic Catalysis Fundamentals: I. Fast calculation of limit cycles in dynamic catalysis

Dynamic catalysis—the forced oscillation of catalytic reaction coordinate potential energy surfaces (PES)—has recently emerged as a promising method for the acceleration of heterogeneously-catalyzed reactions. Theoretical study of enhancement of rates and supra-equilibrium product yield via dynamic catalysis has, to-date, been severely limited by onerous computational demands of forward integration of stiff, coupled ordinary differential equations (ODEs) that are necessary to quantitatively describe periodic cycling between PESs. Here, we establish a new approach that reduces, by ≳108×, the computational cost of finding the time-averaged rate at dynamic steady state (i.e. the limit cycle for linear and nonlinear systems of kinetic equations). Our developments are motivated by and conceived from physical and mathematical insight drawn from examination of a simple, didactic case study for which closed-form solutions of rate enhancement are derived in explicit terms of periods of oscillation and elementary step rate constants. Generalization of such closed-form solutions to more complex catalytic systems is achieved by introducing a periodic boundary condition requiring the dynamic steady state solution to have the same periodicity as the kinetic oscillations and solving the corresponding differential equations by linear algebra or Newton-Raphson-based approaches. The methodology is well-suited to extension to non-linear systems for which we detail the potential for multiple solutions or solutions with different periodicities. For linear and non-linear systems alike, the acute decrement in computational expense enables rapid optimization of oscillation waveforms and, consequently, accelerates understanding of the key catalyst properties that enable maximization of reaction rates, conversions, and selectivities during dynamic catalysis.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

ExaTN

A challenging scientific problem that will benefit from exascale computing is predictive simulation of two- and three-dimensional quantum many-body Hamiltonians in condensed matter physics, together with the related strong entanglement problems in quantum chemistry and quantum computing. Efficient numerical simulations will require new insights into wavefunction compression algorithms that scale on extremely heterogeneous HPC architectures. To address this need, we propose to develop a scalable math library of parallel multi-linear algebraic numerical primitives for hierarchical tensor compression. Our library will subsequently be used for building an efficient, performance-portable HPC framework for simulating strongly correlated quantum systems. In particular, our will will be the first to deliver a massively parallel implementation of the multiscale entanglement renormalization ansatz (MERA), a hierarchical tensor decomposition quantum scheme capable of expressing local expectation values of strongly entangled higher-dimensional quantum systems efficiently. To address the extreme complexity and high computational cost of such schemes, we will automate their parallel implementation by delivering an integrated software framework, ExaTN (Exascale Tensor Networks), that will process hierarchical tensor representations on exascale HPC systems via an asymchronous task-based programming model. As a specific application, our framework will provide scientists with a capability of simulating strongly entangled quantum systems, thus positioning ORNL as a strategic leader in modeling of strongly correlated materials.

McCaskey, AlexanderJ↗

Higher spin de Sitter Hilbert space

We propose a complete microscopic definition of the Hilbert space of minimal higher spin de Sitter quantum gravity and its Hartle-Hawking vacuum state. The fundamental degrees of freedom are 2N bosonic fields living on the future conformal boundary, where N is proportional to the de Sitter horizon entropy. The vacuum state is normalizable. The model agrees in perturbation theory with expectations from a previously proposed dS-CFT description in terms of a fermionic Sp(N) model, but it goes beyond this, both in its conceptual scope and in its computational power. In particular it resolves the apparent pathologies affecting the Sp(N) model, and it provides an exact formula for late time vacuum correlation functions. We illustrate this by computing probabilities for arbitrarily large field excursions, and by giving fully explicit examples of vacuum 3- and 4-point functions. We discuss bulk reconstruction and show the perturbative bulk QFT canonical commutations relations can be reproduced from the fundamental operator algebra, but only up to a minimal error term ~e -O(N) , and only if the operators are coarse grained in such a way that the number of accessible “pixels” is less than O(N). Independent of this, we show that upon gauging the higher spin symmetry group, one is left with 2N physical degrees of freedom, and that all gauge invariant quantities can be computed by a 2N × 2N matrix model. This suggests a concrete realization of the idea of cosmological complementarity.

1/N expansion↗

End-to-end GPU acceleration of low-order-refined preconditioning for high-order finite element discretizations

In this article, we present algorithms and implementations for the end-to-end GPU acceleration of matrix-free low-order-refined preconditioning of high-order finite element problems. The methods described here allow for the construction of effective preconditioners for high-order problems with optimal memory usage and computational complexity. The preconditioners are based on the construction of a spectrally equivalent low-order discretization on a refined mesh, which is then amenable to, for example, algebraic multigrid preconditioning. The constants of equivalence are independent of mesh size and polynomial degree. For vector finite element problems in H(curl) and H(div) (e.g., for electromagnetic or radiation diffusion problems), a specially constructed interpolation–histopolation basis is used to ensure fast convergence. Detailed performance studies are carried out to analyze the efficiency of the GPU algorithms. The kernel throughput of each of the main algorithmic components is measured, and the strong and weak parallel scalability of the methods is demonstrated. The different relative weighting and significance of the algorithmic components on GPUs and CPUs is discussed. Results on problems involving adaptively refined nonconforming meshes are shown, and the use of the preconditioners on a large-scale magnetic diffusion problem using all spaces of the finite element de Rham complex is illustrated.

97 MATHEMATICS AND COMPUTING↗

A fast and accurate domain decomposition nonlinear manifold reduced order model

Here, this paper integrates nonlinear-manifold reduced order models (NM-ROMs) with domain decomposition (DD). NM ROMs approximate the full order model (FOM) state in a nonlinear-manifold by training a shallow, sparse autoencoder using FOM snapshot data. These NM-ROMs can be advantageous over linear-subspace ROMs (LS-ROMs) for problems with slowly decaying Kolmogorov n-width. However, the number of NM-ROM parameters that need to be trained scales with the size of the FOM. Moreover, for “extreme-scale” problems, the storage of high-dimensional FOM snapshots alone can make ROM training expensive. To alleviate the training cost, this paper applies DD to the FOM, computes NM-ROMs on each subdomain, and couples them to obtain a global NM-ROM. This approach has several advantages: Subdomain NM-ROMs can be trained in parallel, involve fewer parameters to be trained than global NM-ROMs, require smaller subdomain FOM dimensional training data, and can be tailored to subdomain specific features of the FOM. The shallow, sparse architecture of the autoencoder used in each subdomain NM-ROM allows application of hyper-reduction (HR), reducing the complexity caused by nonlinearity and yielding computational speedup of the NM-ROM. This paper provides the first application of NM-ROM (with HR) to a DD problem. In particular, this paper details an algebraic DD reformulation of the FOM, training a NM-ROM with HR for each sub domain, and a sequential quadratic programming (SQP) solver to evaluate the coupled global NM-ROM. Theoretical convergence results for the SQP method and a priori and a posteriori error estimates for the DD NM-ROM with HR are provided. The proposed DD NM-ROM with HR approach is numerically compared to a DD LS-ROM with HR on the 2D steady-state Burgers’ equation, showing an order of magnitude improvement in accuracy of the proposed DD NM-ROM over the DD LS-ROM.

97 MATHEMATICS AND COMPUTING↗

An analytical thermohydraulic model for discretely fractured geothermal reservoirs

In discretely fractured reservoirs such as those found in Enhanced/Engineered Geothermal Systems (EGS), knowledge of the fracture network is important in understanding the thermal hydraulics, i.e., how the fluid flows and the resulting temporal evolution of the subsurface temperature. Here, the purpose of this study was to develop an analytical model of the fluid flow and heat transport in a discretely fractured network that can be used for a wide range of modeling applications and serve as an alternative analysis tool to more computationally intensive numerical codes. Given the connectivity and structure of a fracture network, the flow in the system was solved using a linear system of algebraic equations for the pressure at the nodes of the network. With the flow determined, the temperature in the fracture was solved by coupling convective heat transport in the fracture with one-dimensional heat conduction perpendicular to the fracture, employing the Green’s function derived solution for a single discrete fracture. The predicted temperatures along the fracture surfaces from the analytical solution were compared to numerical simulations using the TOUGH2 reservoir code. Through two case studies, we showed the capabilities of the analytical model and explored the effect of uncertainty in the fracture apertures and network structure on thermal performance. While both sources of uncertainty independently produce large variations in production temperature, uncertainty in the network structure, whenever present, had a predominant influence on thermal performance.

58 GEOSCIENCES↗

High Order Anchoring and Reinitialization of Level Set Function for Simulating Interface Motion

A second order interface anchoring method has been developed and used with fast sweeping algorithm for reinitialization of a level set function. The algebraic anchoring formulation ensures that the location of the actual interface is preserved, leading to better mass conservation property. It also provides high order accurate algebraic constraint for solving the Eikonal equation on a finite difference grid. Geometric properties of the interface such as surface normal and curvature are subsequently computed from the reinitialized distance function. Various analytical functions for modeling distortion in level set field are considered and accuracy of reinitialization is evaluated using first and second order anchoring schemes. It is also shown that accurate computation of interface curvature requires a high order anchor in addition to a high order fast sweeping method. Mass conservation property of reinitialization is also analyzed by considering test problems from literature including the classic Rider–Kothe single vortex problem. The formulation is suitable for efficient parallelization for both distributed memory and on-node shared memory parallel systems. In conclusion, scalability and performance of the reinitialization scheme on multiple architectures are demonstrated.

97 MATHEMATICS AND COMPUTING↗

hypredrive: high-level interface for solving linear systems with hypre

This software introduces a high-level interface designed to simplify solving linear systems using hypre, a renowned library for such computational challenges. It is crafted to be accessible and user-friendly, making the powerful capabilities of hypre available to a broader audience without requiring in-depth technical knowledge. The interface is characterized by its use of YAML for input, a format celebrated for its structured yet straightforward readability. This choice ensures that users can easily configure the software to meet their specific needs. Additionally, the software boasts an intuitive API that encapsulates hypre's functionalities, making it easier for users to interact with the process of solving linear systems. It is particularly beneficial for prototyping, offering a quick and efficient means to test various solver and preconditioner configurations. Furthermore, the software allows for the creation of an offline testing framework in which predefined linear systems are read from files and benchmarked with user-defined solution strategies. This makes it an invaluable tool for developers and researchers exploring and validating their computational models. Overall, the software serves as a bridge, bringing the advanced computational capabilities of hypre closer to users who may need more specialized technical expertise, thereby facilitating innovation and exploration in the field of numerical linear algebra.

Paludetto Magri, Victor↗

Robust spatial memory maps encoded by networks with transient connections

The spiking activity of principal cells in mammalian hippocampus encodes an internalized neuronal representation of the ambient space-a cognitive map. Once learned, such a map enables the animal to navigate a given environment for a long period. However, the neuronal substrate that produces this map is transient: the synaptic connections in the hippocampus and in the downstream neuronal networks never cease to form and to deteriorate at a rapid rate. How can the brain maintain a robust, reliable representation of space using a network that constantly changes its architecture? We address this question using a computational framework that allows evaluating the effect produced by the decaying connections between simulated hippocampal neurons on the properties of the cognitive map. Using novel Algebraic Topology techniques, we demonstrate that emergence of stable cognitive maps produced by networks with transient architectures is a generic phenomenon. The model also points out that deterioration of the cognitive map caused by weakening or lost connections between neurons may be compensated by simulating the neuronal activity. Lastly, the model explicates the importance of the complementary learning systems for processing spatial information at different levels of spatiotemporal granularity.

59 BASIC BIOLOGICAL SCIENCES↗

Solution of the Feynman Equation for Time Evolving Fission Chains

The partial differential equation proposed by Feynman describing the time evolution of a fission chain in metal is solved by a method also proposed by Feynman. The partial differential equation is reduced to a transcendental algebraic equation. The solution involves roots of a 7th order polynomial. Both the roots and the transcendental equation are then solved numerically. Two populations are computed from the probability generating function, the internal number of neutrons in time, and the accumulated number of leaked neutrons in time. This same equation also describes a limit of a thermal reactor, where induced fission is totally driven by neutrons that have thermalized and are diffusing in a moderator.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Computation of radiative heat transport across a nanoscale vacuum gap

Radiation heat transport across a vacuum gap between two half-spaces is studied. By consistently applying only the fundamental laws of physics, we obtain an algebraic equation that connects the temperatures of the half-spaces and the heat flux between them. The heat transport coefficient generated by this equation for such structures matches available experimental data for nanoscale and larger gaps without appealing to any additional specific mechanisms of energy transfer.

42 ENGINEERING↗

U(1) fields from qubits: An approach via D-theory algebra

A new quantum link microstructure was proposed for the lattice quantum chromodynamics (QCD) Hamiltonian, replacing the Wilson gauge links with a bilinear of fermionic qubits, later generalized to D-theory. This formalism provides a general framework for building lattice field theory algorithms for quantum computing. We focus mostly on the simplest case of a quantum rotor for a single compact U(1) field. We also make some progress for non-Abelian setups, making it clear that the ideas developed in the U(1) case extend to other groups. These in turn are building blocks for 1 + 0 -dimensional ( 1 + 0 -D) matrix models, 1 + 1 -D sigma models and non-Abelian gauge theories in 2 + 1 and 3 + 1 dimensions. By introducing multiple flavors for the U(1) field, where the flavor symmetry is gauged, we can efficiently approach the infinite-dimensional Hilbert space of the quantum O(2) rotor with increasing flavors. The emphasis of the method is on preserving the symplectic algebra exchanging fermionic qubits by sigma matrices (or hard bosons) and developing a formal strategy capable of generalization to a SU ( 3 ) field for lattice QCD and other non-Abelian 1 + 1 -D sigma models or 3 + 1 -D gauge theories. For U(1), we discuss briefly the qubit algorithms for the study of the discrete 1 + 1 -D sine-Gordon equation. Published by the American Physical Society 2024

Astronomy & Astrophysics↗

Online energy consumption forecast for battery electric buses using a learning-free algebraic method

Accurately predicting the energy consumption plays a vital role in battery electric buses (BEBs) route planning and deployment. Based on the algebraic derivative estimation, we present a novel method to forecast the energy consumption in real time. In contrast to the mainstream machine-learning-based methods, the proposed method does not require access to the historical energy consumption data. It eliminates the time-consuming and computationally expensive offline training. Consequently, its prediction performance is not constrained by the quantity and quality of the training data. Moreover, the method can swiftly adapt to new situations not included in the previous driving cycles, which makes it especially suitable for emerging transport modes, e.g., on-demand transit services. In addition, its online execution only involves algebraic calculations, yielding superior calculation efficiency. Using real-world data, we comprehensively compare the performance of the proposed learning-free algebraic method with multiple representative machine-learning-based methods. Finally, the advantages and limitations of the proposed method are discussed in detail.

33 ADVANCED PROPULSION SYSTEMS↗