Deep Exclusive Electroproduction of π 0 at High Q 2 in the Quark Valence Regime
Not Available
72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
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Software Development: 3D Animations and Creating User Interfaces for Realistic Simulations
My fall 2015 semester was spent at the Lyndon B. Johnson Space Center working in the Integrated Graphics, Operations, and Analysis Laboratory (IGOAL). My first project was to create a video animation that could tell the story of OMICS. OMICS is a term being used in the field of biomedical science to describe the collective technologies that study biological systems, such as what makes up a cell and how it functions with other systems. In the IGOAL I used a large 23 inch Wacom monitor to draw storyboards, graphics, and line art animations. I used Blender as the 3D environment to sculpt, shape, cut or modify the several scenes and models for the video. A challenge creating this video was to take a term used in biomedical science and describe it in such a way that an 8th grade student can understand. I used a line art style because it would visually set the tone for what we thought was an educational style. In order to get a handle on the perspective and overall feel for the animation without overloading my workspace, I split up the 2 minute animation into several scenes. I used Blender's python scripting capabilities which allowed for the addition of plugins to add or modify tools. The scripts can also directly interact with the objects to create naturalistic patterns or movements. After collecting the rendered scenes, I used Blender's built-in video editing workspace to output the animation. My second project was to write software that emulates a physical system's interface. The interface was to simulate a boat, ROV, and winch system. Simulations are a time and cost effective way to test complicated data and provide training for operators without having to use expensive hardware. We created the virtual controls with 3-D Blender models and 2-D graphics, and then add functionality in C# using the Unity game engine. The Unity engine provides several essential behaviors of a simulator, such as the start and update functions. A framework for Unity, which was developed in the lab, provided a way to place the different widgets on the virtual console dock and have them resize correctly based on the window dimensions.. My task in this project was to create the controls and visualizations for the data coming in from the simulator for the boat portion of the project. I wrote a class for each control window to handle the functionality of that widget. I implemented 11 widgets that make up the ship portion of the simulator. The members of the lab were each masters of their craft and I'm glad I had the opportunity to learn from them. I learned to plan strategically so I could finish this project on time. I allotted time for storyboarding, development, and refinement. In regards to animating I learned to use modifiers like lattice, boolean and build deformers. I also learned how to animate with drivers, how to use the dope sheet, and how to use the graph editor. In coding I learned to limit the chances for bugs by privatizing functions that should be exclusive to their class. I learned how to use the GIT repository to commit, stash and pull the latest build. I learned a bit of everything because I had the chance to see the entire application development process from the artwork, to the implementation.
Gordillo, Orlando Enrique↗
Relativistic Effects on a Metal–Metal Bond: Osmium Corrole Dimers
A series of metal–metal bonded osmium corrole dimers, {Os[T p XPC]} 2 , were synthesized in reasonably good yields (35–46%) via the interaction of the corresponding free-base meso -tris( p -X-phenyl)corroles (H 3 [T p XPC], X = CF 3 , H, CH 3 , and OCH 3 ), Os 3 (CO) 12 , and potassium carbonate in 1,2,4-trichlorobenzene under an inert atmosphere at 180 °C over several hours. The complexes are only the second class of Os corroles reported to date (the first being Os VI N corroles) and also the second class of metal–metal bonded metallocorrole dimers (the other being Ru corrole dimers). Comparison of the X-ray structures, redox potentials, and optical spectra of analogous Ru and Os corrole dimers, along with scalar-relativistic DFT calculations, has provided an experimentally calibrated account of relativistic effects in these complexes. Three of the Os corrole dimers (X = CF 3 , H, and OCH 3 ) were analyzed with single-crystal X-ray diffraction analysis, revealing inversion-related corrole rings with eclipsed Os–N bonds and Os–Os distances of ~2.24 Å that are ~0.06 Å longer than the Ru–Ru distances in the analogous Ru corrole dimers. Interestingly, a comparison of scalar-relativistic and nonrelativistic DFT calculations indicates that this difference in metal–metal bond distance does not, in fact, reflect a differential relativistic effect. Additionally, for a given corrole ligand, the Ru and Os corrole dimers exhibit nearly identical oxidation potentials but dramatically different reduction potentials, with the Os values ~0.5 V lower relative to Ru, suggesting that whereas oxidation occurs in a ligand-centered manner, reduction is substantially metal-centered, which indeed was confirmed by scalar-relativistic calculations. The calculations further indicate that approximately a third of the ~0.5 V difference in reduction potentials can be ascribed to relativity. The somewhat muted value of this relativistic effect appears to be related to the finding that reduction of an Os corrole dimer is not exclusively metal-based but that a significant amount of spin density is delocalized over to the corrole ligand; in contrast, reduction of an Ru corrole dimer occurs exclusively on the Ru–Ru linkage. For isoelectronic complexes, the Ru and Os corrole dimers exhibit substantially different UV–vis spectra. Furthermore, a key difference is a strong near-UV feature of the Os series, which in energy terms is blue-shifted by ~0.55 V relative to the analogous feature of the Ru series. TDDFT calculations suggest that this difference may be related to higher-energy Os(5d)-based LUMOs in the Os case relative to analogous MOs for Ru.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Exclusive photoproduction of π 0 up to large values of Mandelstam variables s , t , and u with CLAS
Not Available
72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
The effects of mixed-species root zones on the resistance of soil bacteria and fungi to long-term experimental and natural reductions in soil moisture
Mixed forest stands tend to be more resistant to drought than species-specific stands partially due to complementarity in root ecology and physiology. For this work, we asked whether complementary differences in the drought resistance of soil microbiomes might contribute to this phenomenon. We experimented on the effects of reduced soil moisture on bacterial and fungal community composition in species-specific (single species) and mixed-species root zones of Norway spruce and European beech forests in a 5-year-old throughfall-exclusion experiment and across seasonal (spring-summer-fall) and latitudinal moisture gradients. Bacteria were most responsive to changes in soil moisture, especially members of Rhizobiales, while fungi were largely unaffected, including ectomycorrhizal fungi (EMF). Community resistance was higher in spruce relative to beech root zones, corresponding with the proportions of drought-favored (more in spruce) and drought-sensitive bacterial taxa (more in beech). The spruce soil microbiome also exhibited greater resistance to seasonal changes between spring (wettest) and fall (driest). Mixed-species root zones contained a hybrid of beech- and spruce-associated microbiomes. Several bacterial populations exhibited either enhanced resistance or greater susceptibility to drought in mixed root zones. Overall, patterns in the relative abundances of soil bacteria closely tracked moisture in seasonal and latitudinal precipitation gradients and were more predictive of soil water content than other environmental variables. We conclude that complementary differences in the drought resistance of soil microbiomes can occur and the likeliest form of complementarity in mixed-root zones coincides with the enrichment of drought-tolerant bacteria associated with spruce and the sustenance of EMF by beech.
54 ENVIRONMENTAL SCIENCES↗
Measurement of the Fast Neutron Response for {sup 4}He Scintillation Detectors Using a Coincidence Scattering Method
Previous work has measured the neutron response of pressurized {sup 4}He scintillation detectors, however these studies only examine the response as a function of incident neutron energy. Since the detection mechanism in {sup 4}He detectors is elastic scattering, and the interacting neutron will only deposit a fraction of its incident kinetic energy in the detector gas, an examination of the response of the detector output to deposited energy is necessary to transform these detectors into instruments for neutron spectrometry. Using a combined time-of-flight (TOF) and coincidence scattering method, this paper further characterizes the {sup 4}He light response to fast neutrons by examining the scintillation light yield as a function of deposited energy, measuring the light response up to 5 MeV. These {sup 4}He detectors are simple in design, and are manufactured by Arktis Radiation Detectors in several sizes. The specific model used in this experiment had an active volume 20 cm long with an inner diameter of 4.4 cm, giving a total active volume of 304 cm{sup 3}. The key components include the active volume, filled with 150 bar of helium-4 gas, and photomultiplier tubes (PMTs) mounted at either end of the active volume. The detector body is made of stainless steel. The detector response was experimentally measured using a two-detector coincidence arrangement with a {sup 252}Cf source. Two {sup 4}He detectors were vertically mounted, and the source was placed at a horizontal distance from the center of the bottom detector, forming a right angle. By requiring coincidence between the two detectors, it was confirmed that each neutron interacting in the second (top) detector must first have undergone a scattering interaction in the first (bottom) detector, and the time-of-flight (TOF) technique could then be used to determine the energy of the neutron as it traveled between the two detectors by the difference in time between the two detector events. More importantly, with the scattering angle known, the amount of energy deposited by the neutron in the bottom detector (ER) was also calculated using kinematic scattering equations. This deposited recoil energy was then compared to the corresponding light output for each event to form a deposited energy scintillation light response matrix. Similarly, the system's insensitivity to gammas and its ability to reject gammas by pulse shape discrimination (PSD) are often cited as an important advantage, although a detailed analysis of these capabilities has not yet been performed. This work therefore quantified these parameters in order to further characterize these detectors for future mixed radiation field measurements. Gamma sources were measured spanning a range of gamma-ray energies from 0.122 MeV to 1.332 MeV, including {sup 57}Co, {sup 137}Cs, {sup 54}Mn, and {sup 60}Co. Each source was counted by the {sup 4}He detector and the background subtracted. Taking the ratio of the number of events detected during the experimental source measurement to the number of gammas predicted by MCNPX to pass through the detector volume yields the detector's intrinsic gamma efficiency. The difference between this fraction and unity is therefore a measure of the detector's ability to ignore interfering gamma rays, defined as its inherent gamma rejection rate. The ability of post-processing PSD algorithms to further reduce the number of gammas is also investigated and quantified. Finally, it has been noted that the scintillation signal from a single neutron event can be separated in time into two components: the fast component is a sharp peak that exists on the order of nanoseconds; the slow component is a series of smaller pulses, stretched out over four microseconds. Whereas previous research has exclusively focused on the energy information contained in the slow component, this work demonstrates that the fast component is also sensitive to neutron energy, and the entire scintillation signal can therefore be used. In conclusion, the relationship of fast neutron {sup 4}He scintillation detectors to deposited neutron energy was explored, and will be combined with previous works that measured the scintillation response to incident neutron energy in order to develop a neutron spectrometer. Similarly, the ability of these {sup 4}He detectors to reject interfering gamma rays was also quantified, and so will enable this spectrometer to be deployed in mixed radiation field measurements. Finally, while previous works with these detectors have focused on an analysis of the slow scintillation component, it was demonstrated in this work that the fast component also contains significant energy information.
46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
Lead Adsorption and Desorption at the Barite (001) Surface in the Presence of EDTA
Scaling minerals, such as barite, can cause detrimental consequences for oil/gas pipelines and water systems, but their formation can be inhibited by organic chelators such as ethylenediaminetetraacetic acid (EDTA). Here, we resolve how EDTA affects sorption and desorption of Pb at the barite (001) surface using a combination of X-ray scattering and microscopy measurements. In the presence of EDTA, Pb incorporated in the topmost part of the barite surface and adsorbed as inner-sphere complexes on the surface. In barite saturated solutions containing [Pb] ≥ 100 μM, overgrowth films grew along step edges. These films were exclusively monolayer thick, indicating that their growth was a self-limiting process. Approximately half of the Pb was removed after 14.5 h reaction with a Pb-free EDTA solution where most of the desorption occurred to adsorbed Pb rather than incorporated Pb. Dissolution proceeded primarily via step retreat and etch pit formation in EDTA, but in deionized water, the secondary phase was quickly removed within 3 min. Together these results suggest EDTA binds to both the surface and Pb in solution, which limits Pb sorption. However, EDTA binding to the surface also inhibits removal of the secondary phase that formed at higher Pb concentrations.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Measurement of the Ar ( e , e ' p ) and Ti ( e , e ' p ) cross sections in Jefferson Lab Hall A
The E12-14-012 experiment, performed in Jefferson Lab Hall A, has collected exclusive electron-scattering data ( e , e ' p ) in parallel kinematics using natural argon and natural titanium targets. In this study we report the first results of the analysis of the data set corresponding to beam energy 2222 GeV, electron scattering angle 21 . 5 ° , and proton emission angle – 50 ° . The differential cross sections, measured with ≈ 4 % uncertainty, have been studied as a function of missing energy and missing momentum, and compared to the results of Monte Carlo simulations, obtained from a model based on the distorted-wave impulse approximation.
73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
𝐵 → 𝜌ℓ$\bar{v}$ Resonance Form Factors from 𝐵→ 𝜋𝜋ℓ$\bar{v}$ in Lattice QCD
The decay 𝐵 → 𝜌ℓ$\bar{v}$ is an attractive process for determining the magnitude of the smallest Cabibbo-Kobayashi-Maskawa matrix element, |𝑉 𝑢𝑏 |, and can provide new insights into the origin of the long-standing exclusive-inclusive discrepancy in determinations of this standard-model parameter. This requires a nonperturbative QCD calculation of the 𝐵 → 𝜌 form factors 𝑉, 𝐴 0 , 𝐴 1 , and 𝐴 12 . The unstable nature of the 𝜌 resonance has prevented precise lattice QCD calculations of these form factors to date. Here, we present the first lattice QCD calculation of the 𝐵 → 𝜌 form factors in which the 𝜌 is treated properly as a resonance in 𝑃-wave 𝜋𝜋 scattering. To this end, we use the Lellouch-Lüscher finite-volume formalism to compute the 𝐵 → 𝜋𝜋 form factors as a function of both momentum transfer and 𝜋𝜋 invariant mass, and then analytically continue to the 𝜌 resonance pole. This calculation is performed with 2 + 1 dynamical quark flavors at a pion mass of approximately 320 MeV, and demonstrates a clear path toward results at the physical point.
72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
N-Glycolylneuraminic Acid Binding of Avian and Equine H7 Influenza A Viruses
Influenza A viruses (IAV) initiate infection by binding to glycans with terminal sialic acids on the cell surface. Hosts of IAV variably express two major forms of sialic acid, N-acetylneuraminic acid (NeuAc) and N-glycolylneuraminic acid (NeuGc). NeuGc is produced in most mammals, including horses and pigs, but is absent in humans, ferrets, and birds. The only known naturally occurring IAV that exclusively bind NeuGc are extinct highly pathogenic equine H7N7 viruses. We determined the crystal structure of a representative equine H7 hemagglutinin (HA) in complex with NeuGc and observed high similarity in the receptor-binding domain with an avian H7 HA. To determine the molecular basis for NeuAc and NeuGc specificity, we performed systematic mutational analyses, based on the structural insights, on two distant avian H7 HAs and an H15 HA. We found that the A135E mutation is key for binding α2,3-linked NeuGc but does not abolish NeuAc binding. The additional mutations S128T, I130V, T189A, and K193R converted the specificity from NeuAc to NeuGc. We investigated the residues at positions 128, 130, 135, 189, and 193 in a phylogenetic analysis of avian and equine H7 HAs. This analysis revealed a clear distinction between equine and avian residues. The highest variability was observed at key position 135, of which only the equine glutamic acid led to NeuGc binding. These results demonstrate that genetically distinct H7 and H15 HAs can be switched from NeuAc to NeuGc binding and vice versa after the introduction of several mutations, providing insights into the adaptation of H7 viruses to NeuGc receptors.
59 BASIC BIOLOGICAL SCIENCES↗
SAXS analysis of a soluble cytosolic NgBR construct including extracellular and transmembrane domains
The Nogo-B receptor (NgBR) is involved in oncogenic Ras signaling through directly binding to farnesylated Ras. It recruits farnesylated Ras to the non-lipid-raft membrane for interaction with downstream effectors. However, the cytosolic domain of NgBR itself is only partially folded. The lack of several conserved secondary structural elements makes this domain unlikely to form a complete farnesyl binding pocket. We find that inclusion of the extracellular and transmembrane domains that contain additional conserved residues to the cytosolic region results in a well folded protein with a similar size and shape to the E.coli cis-isoprenyl transferase (UPPs). Small Angle X-ray Scattering (SAXS) analysis reveals the radius of gyration (R g ) of our NgBR construct to be 18.2 Å with a maximum particle dimension (D max ) of 61.0 Å. Ab initio shape modeling returns a globular molecular envelope with an estimated molecular weight of 23.0 kD closely correlated with the calculated molecular weight. Both Kratky plot and pair distribution function of NgBR scattering reveal a bell shaped peak which is characteristic of a single globularly folded protein. In addition, circular dichroism (CD) analysis reveals that our construct has the secondary structure contents similar to the UPPs. However, this result does not agree with the currently accepted topological orientation of NgBR which might partition this construct into three separate domains. This discrepancy suggests another possible NgBR topology and lends insight into a potential molecular basis of how NgBR facilitates farnesylated Ras recruitment.
59 BASIC BIOLOGICAL SCIENCES↗
Measurement of Electron-Neutrino Charged-Current Cross Sections on 127 I with the COHERENT NaI$ν$E Detector
Using an 185-kg NaI[Tl] array, COHERENT has measured the inclusive electron-neutrino chargedcurrent cross section on 127 I with pion decay-at-rest neutrinos produced by the Spallation Neutron Source at Oak Ridge National Laboratory. Iodine is one the heaviest targets for which low-energy (≤ 50 MeV) inelastic neutrino-nucleus processes have been measured, and this is the first measurement of its inclusive cross section. After a five-year detector exposure, COHERENT reports a flux-averaged cross section for electron neutrinos of ${9.2}_{–1.8}^{+2.1}$ × 10 –40 cm 2 . This corresponds to a value that is ~41% lower than predicted using the MARLEY event generator with a measured Gamow-Teller strength distribution. In addition, the observed visible spectrum from charged-current scattering on 127 I has been measured between 10 and 55 MeV, and the exclusive zero-neutron and one-or-more-neutron emission cross sections are measured to be ${5.2}_{–3.1}^{+3.4}$ × 10 –40 and ${2.2}_{—2.2}^{+3.5}$ × 10 –40 cm 2 , respectively.
72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
Control of solvent adsorption in porous liquids through solvent-solvent interactions
Type 3 Porous Liquids (PLs) are a new class of materials that offer transformative potential for gas capture and utilization. These PLs are comprised of a bulky solvent with a suspended empty nanoporous material that enables selective and high-capacity capture from dilute and complex gas steams. The relationship between the nanoporous material, the structure of the solvent molecules, and the time dependence of solvent adsorption into the nanoporous material governs long term adsorption properties. Herein, molecular dynamics (MD) calculations evaluated the solvent dynamics of nine neat solvents with a broad range of chemical identities and experimental density measurements probed the time-dependent adsorption of these solvents into the ZIF-8 metal-organic frameworks (MOFs) to form PL dispersions over three weeks. Two of the nine dispersion, using glyceryl triacetate and 2’-hydroxyacetopheneone as solvents, presented sufficiently low solvent infiltration—characterized by solvent adsorption less than 40% of the ZIF-8 pore volume—to be viable as PLs. The experimental solvent adsorption data for ZIF-8 dispersed in the four aromatic solvents (acetophenone, methylbenzoate, 2-isopropylphenol, and 2’-hydroxyacetophenone) was fit to a kinetic model to quantify rate of solvent adsorption into ZIF-8. The rates of adsorption of these four similar-sized solvents demonstrated that solvent adsorption is slowed and limited by solvent clustering dynamics that are, in turn, driven by intermolecular hydrogen bonding. Ultimately, experimental solvent sorption measurements indicated that glyceryl triacetate and 2’-hydroxyacetophenone with ZIF-8 formed PLs with the most stable porosity and the greatest potential for gas capture. In conclusion, the combined experimental-computational materials exploration framework used here reveals a novel relationship between molecular scale solvent dynamics and macroscale solvent adsorption kinetics critical for the discovery and rapid evaluation of Type 3 PL compositions.
Hydrogen bonding↗
Merger identification through photometric bands, colours, and their errors
Aims. We present the application of a fully connected neural network (NN) for galaxy merger identification using exclusively photometric information. Our purpose is not only to test the method’s efficiency, but also to understand what merger properties the NN can learn and what their physical interpretation is. Methods. We created a class-balanced training dataset of 5860 galaxies split into mergers and non-mergers. The galaxy observations came from SDSS DR6 and were visually identified in Galaxy Zoo. The 2930 mergers were selected from known SDSS mergers and the respective non-mergers were the closest match in both redshift and r magnitude. The NN architecture was built by testing a different number of layers with different sizes and variations of the dropout rate. We compared input spaces constructed using: the five SDSS filters: u, g, r, i, and z; combinations of bands, colours, and their errors; six magnitude types; and variations of input normalization. Results. We find that the fibre magnitude errors contribute the most to the training accuracy. Studying the parameters from which they are calculated, we show that the input space built from the sky error background in the five SDSS bands alone leads to 92.64 ± 0.15% training accuracy. We also find that the input normalization, that is to say, how the data are presented to the NN, has a significant effect on the training performance. Conclusions. We conclude that, from all the SDSS photometric information, the sky error background is the most sensitive to merging processes. This finding is supported by an analysis of its five-band feature space by means of data visualization. Moreover, studying the plane of the g and r sky error bands shows that a decision boundary line is enough to achieve an accuracy of 91.59%.
79 ASTRONOMY AND ASTROPHYSICS↗
Search for long-lived particles in final states with displaced dimuon vertices in p p collisions at s = 13 TeV with the ATLAS detector
A search is performed for a long-lived particle decaying into a final state that includes a pair of muons of opposite-sign electric charge, using proton-proton collision data collected at √ s = 13 TeV by the ATLAS detector at the Large Hadron Collider corresponding to an integrated luminosity of 32.9 fb -1 . No significant excess over the Standard Model expectation is observed. Limits at 95% confidence level on the lifetime of the long-lived particle are presented in models of new phenomena including gauge-mediated supersymmetry or decay of the Higgs boson, H, to a pair of dark photons, Z D . Lifetimes in the range c τ = 1 – 2400 cm are excluded, depending on the parameters of the model. In the supersymmetric model, the lightest neutralino is the next-to-lightest supersymmetric particle, with a relatively long lifetime due to its weak coupling to the gravitino, the lightest supersymmetric particle. The lifetime limits are determined for very light gravitino mass and various assumptions for the neutralino mass in the range 300–1000 GeV. In the dark photon model, the lifetime limits are interpreted as exclusion contours in the plane of the coupling between the Z D and the Standard Model Z boson versus the Z D mass (in the range 20–60 GeV), for various assumptions for the H → Z D Z D branching fraction.
72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
Search for pair production of first-generation scalar leptoquarks at s =13 TeV
A search for the pair production of first-generation scalar leptoquarks is performed using proton-proton collision data recorded at 13 TeV center-of-mass energy with the CMS detector at the LHC. The data correspond to an integrated luminosity of 35.9 fb-1. The leptoquarks are assumed to decay promptly to a quark and either an electron or a neutrino, with branching fractions β and 1-β, respectively. The search targets the decay final states comprising two electrons, or one electron and large missing transverse momentum, along with two quarks that are detected as hadronic jets. First-generation scalar leptoquarks with masses below 1435 (1270) GeV are excluded for β=1.0(0.5). These are the most stringent limits on the mass of first-generation scalar leptoquarks to date. The data are also interpreted to set exclusion limits in the context of an R-parity violating supersymmetric model, predicting promptly decaying top squarks with a similar dielectron final state. © 2019 2019 CERN, for the CMS Collaboration.
60 APPLIED LIFE SCIENCES↗
A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators
Giant viruses are remarkable for their large genomes, often rivaling those of small bacteria, and for having genes thought exclusive to cellular life. Most isolated to date infect nonmarine protists, leaving their strategies and prevalence in marine environments largely unknown. Using eukaryotic single-cell metagenomics in the Pacific, we discovered a Mimiviridae lineage of giant viruses, which infects choanoflagellates, widespread protistan predators related to metazoans. The ChoanoVirus genomes are the largest yet from pelagic ecosystems, with 442 of 862 predicted proteins lacking known homologs. They are enriched in enzymes for modifying organic compounds, including degradation of chitin, an abundant polysaccharide in oceans, and they encode 3 divergent type-1 rhodopsins (VirR) with distinct evolutionary histories from those that capture sunlight in cellular organisms. One (VirR DTS ) is similar to the only other putative rhodopsin from a virus (PgV) with a known host (a marine alga). Unlike the algal virus, ChoanoViruses encode the entire pigment biosynthesis pathway and cleavage enzyme for producing the required chromophore, retinal. We demonstrate that the rhodopsin shared by ChoanoViruses and PgV binds retinal and pumps protons. Moreover, our 1.65-Å resolved VirR DTS crystal structure and mutational analyses exposed differences from previously characterized type-1 rhodopsins, all of which come from cellular organisms. Multiple VirR types are present in metagenomes from across surface oceans, where they are correlated with and nearly as abundant as a canonical marker gene from Mimiviridae . Our findings indicate that light-dependent energy transfer systems are likely common components of giant viruses of photosynthetic and phagotrophic unicellular marine eukaryotes.
59 BASIC BIOLOGICAL SCIENCES↗
Exotic Dark Matter Search with the Majorana Demonstrator
With excellent energy resolution and ultralow-level radiogenic backgrounds, the high-purity germanium detectors in the enable searches for several classes of exotic dark matter (DM) models. In this work, we report new experimental limits on keV-scale sterile neutrino DM via the transition magnetic moment from conversion to active neutrinos ν s → ν a . We report new limits on fermionic dark matter absorption ( χ + A → ν + A ) and sub-GeV DM-nucleus 3 → 2 scattering ( χ + χ + A → ϕ + A ), and new exclusion limits for bosonic dark matter (axionlike particles and dark photons). These searches utilize the (1–100)-keV low-energy region of a 37.5-kg y exposure collected by the between May 2016 and November 2019 using a set of Ge 76 -enriched detectors whose surface exposure time was carefully controlled, resulting in extremely low levels of cosmogenic activation. Published by the American Physical Society 2024
47 OTHER INSTRUMENTATION↗