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At least 685 records · Page 38

The relationship between Aquaporin-2 protein levels in amniotic fluid and the fetal kidney in humans

Aquaporin-2 (AQP2) is an important water channel protein that is expressed in the renal collecting duct and plays a key role in urine concentration and body water homeostasis. It has been demonstrated that the urinary excretion of AQP2 correlates strongly with its expression in the kidney in adult humans and rats. However, there have been no studies on the urinary excretion of AQP2 in human fetuses during development. Fetal urine is the main source of the amniotic fluid; we speculate that the level of AQP2 in the amniotic fluid could reflect the expression level of the AQP2 protein in the fetal kidney. The purpose of the present study was to explore the relationship between AQP2 in the amniotic fluid and that in the fetal kidney.

60 APPLIED LIFE SCIENCES↗

Geochemical evolution in Cacapon member: Fluid-rock interaction experiments and model insights for Appalachian Basin geothermal development

Here, this study combines recirculated flow-through experimental results conducted for 17 days at 90C and 200 PSI with reactive transport modeling to estimate fluid-rock interactions occurring in a sandy mudstone using an interbedded sandstone-shale sample from the Cacapon Member of the upper Tuscarora Sandstone/lower Rose Hill Formation for the purpose of geothermal exploration. Results suggest that the fluid and rock are likely to be in or near partial-equilibrium after approximately one year. In addition, after >400 h of continuous injection at 0.05 mL/min (5*10 −8 m 3 /min) the reactive front is restricted to the first ∼13% of the 4 cm*1.6 cm experimental rock length, whereas after >9100 h (∼1 year), the reactive front extends to 30% total length. The rate of changes in dissolution or precipitation are however, very minimal, with all major rock-forming minerals having rates <10 −11 mol/L porous media/s. Reservoir rock in the presence of dilute brine as may be the case during operation of an enhanced geothermal system would experience little alteration during the shut-in phase, and possibly up to one year. These results have utility in geothermal exploration for reservoirs at similar temperatures as well as general fluid-sandy mudstone rock interaction geochemistry.

Appalachian Basin↗

Pressure and fluid-driven fracture propagation in porous media using an adaptive finite element phase field model

This work presents phase field fracture modeling in heterogeneous porous media. We develop robust and efficient numerical algorithms for pressure-driven and fluid-driven settings in which the focus relies on mesh adaptivity in order to save computational cost for large-scale 3D applications. In the fluid-driven framework, we solve for three unknowns pressure, displacements and phase field that are treated with a fixed-stress iteration in which the pressure and the displacement–phase-field system are decoupled. The latter subsystem is solved with a combined Newton approach employing a primal–dual active set method in order to account for crack irreversibility. Numerical examples for pressurized fractures and fluid filled fracture propagation in heterogeneous porous media demonstrate our developments. Finally in particular, mesh refinement allows us to perform systematic studies with respect to the spatial discretization parameter.

42 ENGINEERING↗

GaMin’11 – an international inter-laboratory comparison for geochemical CO₂ - saline fluid - mineral interaction experiments

Due to the strong interest in geochemical CO₂-fluid-rock interaction in the context of geological storage of CO₂ a growing number of research groups have used a variety of different experimental ways to identify important geochemical dissolution or precipitation reactions and – if possible – quantify the rates and extent of mineral or rock alteration. In this inter-laboratory comparison the gas-fluid-mineral reactions of three samples of rock-forming minerals have been investigated by 11 experimental labs. The reported results point to robust identification of the major processes in the experiments by most groups. The dissolution rates derived from the changes in composition of the aqueous phase are consistent overall, but the variation could be reduced by using similar corrections for changing parameters in the reaction cells over time. The comparison of experimental setups and procedures as well as of data corrections identified potential improvements for future gas-fluid-rock studies.

58 GEOSCIENCES↗

Review of analytical studies on seismic fluid-structure interaction of base-supported cylindrical tanks

Analytical solutions for seismic fluid-structure interaction (FSI) of tanks are used by analysts and engineers for a number of purposes, including preliminary sizing, risk assessment, and verification of numerical models. Analytical solutions for seismic FSI of tanks were first developed in the 1930s and have been extended and/or modified in the following nine decades to accommodate different seismic inputs and boundary conditions. This report reviews published analytical solutions for rigid and flexible, base-supported, cylindrical tanks subjected to unidirectional horizontal motion of a small amplitude. The studies parsed the fluid-structure (FSI) response into an impulsive and a convective component, and addressed frequencies of lateral motions of the tank (i.e., impulsive frequencies), hydrodynamic pressures, frequencies of waves (i.e., convective frequencies), wave heights, and reactions at the base. The solutions were categorized into exact and approximate solutions based on the methodologies used. Herein, FSI responses are calculated and compared for a range of tank dimensions using the analytical solutions from the different studies. The responses presented here are normalized to be unitless, and can be used for tanks with different dimensions and mechanical properties, and subjected to different input motions. A sample steel water tank is analyzed using the normalized solutions for two earthquake ground motions with different frequency contents. Ignoring tank flexibility may significantly underestimate seismic responses of the tank and its contained fluid. The approximate solutions, which have been widely used for decades, may not be sufficiently accurate in the modern era. Calculation errors in the reviewed studies are identified and corrected, and differences are quantified for the sample tank.

42 ENGINEERING↗

Adaptive time stepping for fluid-structure interaction solvers

In this work, a novel adaptive time stepping scheme for fluid-structure interaction (FSI) problems is proposed that allows for controlling the accuracy of the time-discrete solution. Furthermore, it eases practical computations by providing an efficient and very robust time step size selection. This has proven to be very useful, especially when addressing new physical problems, where no educated guess for an appropriate time step size is available. The fluid and the structure field, but also the fluid-structure interface are taken into account for the purpose of a posteriori error estimation, rendering it easy to implement and only adding negligible additional cost. The adaptive time stepping scheme is incorporated into a monolithic solution framework, but can straightforwardly be applied to partitioned solvers as well. The basic idea can be extended to the coupling of an arbitrary number of physical models. Accuracy and efficiency of the proposed method are studied in a variety of numerical examples ranging from academic benchmark tests to complex biomedical applications like the pulsatile blood flow through an abdominal aortic aneurysm. Finally, the demonstrated accuracy of the time-discrete solution in combination with reduced computational cost make this algorithm very appealing in all kinds of FSI applications.

97 MATHEMATICS AND COMPUTING↗

Rheological investigation of effect of high temperature on geothermal drilling fluids additives and lost circulation materials

High temperatures (HT) and the corrosive environment make the design of a geothermal drilling fluid a highly complex task. The presence of HT exacerbates the problems due to thermal degradation. Geothermal aquifers usually combine high-temperature and complex chemistry, making them highly corrosive. Although geothermal drilling fluids are exposed to thermal degradation, research of the effect on mud rheological properties in temperatures near or above 149°C (300°F) is limited. In this study, a High Pressure-High Temperature (HPHT) rheology setup was used to measure drilling fluids' properties up to 204.4°C (400°F). Rheological behavior of viscosity, density, lost circulation, and alkalinity control additives were analyzed at HT. It was found experimentally that Bentonite alone is thermally stable at HT. In contrast, Caustic Soda showed a tendency to gelate at temperatures above 93.3°C (200°F), adversely affecting mud rheology. Alkalinity control materials to replace Caustic Soda were evaluated. Among them, Lime presented the best thermal stability at 204.4°C with a range of variation of 0.0024 Pa.s (2.4 cP) on apparent viscosity after three consecutive tests. Besides, it was tested 11 different lost circulation materials (LCM) for understanding their rheological behavior at HT. Further, it was found that HT has less impact on fine granular materials rheological behavior with an average increase of 17.7% compared with the baseline. In contrast, flaky, fibrous, and coarse granular materials presented a more apparent impact in WBM rheology with a deviation of 166% compared with the baseline.

15 GEOTHERMAL ENERGY↗

Performance analysis of single-phase immersion cooling system of data center using FC-40 dielectric fluid

Immersion cooling technologies have become an emerging cooling method for data center cooling. The studies available in open literature dealt with immersion cooling performance of data servers using mineral oil, EC-100, and Opticool 872552, but the studies focusing on the performance of FC-40 dielectric fluid is not available. Therefore, this study aimed to develop a single-phase liquid immersion cooling system using FC-40 dielectric fluid for a 1U (44.45 mm height) data server. The present study experimentally investigated the influence of different design and operating parameters, including the inlet/outlet port configuration (T and Z configurations), the bypass effect, the flowrate (1–3 LPM), the heating load (200–600 W), the inlet fluid temperature (15–35 °C), the presence of suction fan with various arrangements, and different heat sink bases (solid base, vapor chamber and heat pipe base). The results showed that the T-configuration could provide a 12.6% and 0.5–2.8 °C reduction in thermal resistance and case temperature compared to the Z-configuration, respectively. Additionally, the heat sink with heat pipe and vapor chamber base offered a minimum case temperature of 56.7 °C and 55.2 °C against the 60 °C experienced in the heat sink with flat plate base, respectively.

42 ENGINEERING↗

Determining the extent of potential fugitive fluid migration from geologic carbon storage in hydrocarbon-bearing reservoirs: Insights from one-dimensional numerical modeling

Numerical modeling of Geologic Carbon Sequestration in permeable reservoirs initially containing hydrocarbons is conducted using the multi-phase, multi-component thermohydrologic simulator TOGA (TOUGH Oil, Gas, Aqueous; TOUGH stands for Transport Of Unsaturated Groundwater and Heat), to determine how phase and composition of the original fluids influence the extent of the zone where upward fugitive fluid migration could potentially occur, denoted R f . The area within R f comprises regions of substantially elevated pressure and free-phase CO 2 saturation, where a breach in reservoir sealing capacity would lead to upward fugitive fluid migration. The model examines the conditions within the storage reservoir that could lead to fugitive flow, but does not model the fugitive flow itself. A one-dimensional radial model of the storage reservoir is used, and three initial phase conditions are considered: single-phase aqueous, two-phase gas-aqueous, and three-phase oil-gas-aqueous. Components that may be present are H 2 O, CO 2 , CH 4 , C 4 H 10 , and C 10 H 22 . The most important factors controlling Rf are (1) the initial gas-phase saturation within the reservoir, and (2) the lateral extent of multi-phase initial conditions, particularly CO 2 . The composition of liquid and gas phases has a secondary effect. The impact of reservoir depth, thickness, injection rate, and hydrologic properties are also briefly examined, with thickness (or equivalently injection rate) having the biggest effect. These results can help to understand important trends in potential response of CO 2 -EOR fields being considered for dedicated CO 2 storage.

CO₂ plume migration↗

Modeling the dynamic response of rock masses with multiple compliant fluid saturated joint sets - Part II: Continuum modeling

Part I of this two-part paper describes enhancements of a mesoscale model to include: many non-persistent fluid saturated joints with finite area, normal compliance with hysteresis and the weakening effects of angular deviation in the joint sets and of fluid pressure in the joints. The objective of this Part II is to use the results of the mesoscale model as simulated data to inspire functional forms in a continuum model for rock masses with multiple compliant fluid saturated joint sets which include these enhancements. Also, an algorithm is proposed for reducing the number of joint sets being modeled. Examples are presented here which show that the continuum model can predict similar anisotropic response to that observed in mesoscale simulations. In contrast with the mesoscale model, the continuum model can be used for large scale simulations of real applications, smoothly transitioning from coupled inelastic thermomechanical response near an explosive source to orthotropic elastic response far from the source.

58 GEOSCIENCES↗

Localization of deformation in fluid-saturated sandstone

Herein we discuss a laboratory study of inelastic deformation and localization was conducted to evaluate microseismicity and fracture in fluid-saturated rock. Plane strain compression experiments were performed on oil- and water-saturated Berea sandstone under dry, drained, undrained, and quasi-unjacketed conditions. Parameters associated with the elastic and inelastic material response were accurately measured and used in a constitutive model to predict localization of deformation under the drained and undrained conditions. Acoustic emission (AE) activity was recorded and the onset of inelastic response in fluid-saturated rock, similar to dry rock, coincided with an increase in AE rate. Fracture initiation and propagation were successfully monitored by AE locations. Clustering of AE events and the start of inhomogeneous deformation inferred from displacement measurements are shown to be well correlated with the model prediction of the onset of localized deformation under various rock-fluid interaction conditions.

42 ENGINEERING↗

Classification of machine learning frameworks for data-driven thermal fluid models

Thermal fluid processes are inherently multi-physics and multi-scale, involving mass-momentum-energy transport phenomena at multiple scales. Thermal fluid simulation (TFS) is based on solving conservative equations, for which – except for “first-principles” direct numerical simulation – closure relations (CRs) are required to provide microscopic interactions or so-called sub-grid-scale physics. In practice, TFS is realized through reduced-order modeling, and its CRs as low-fidelity models can be informed by observations and data from relevant and adequately evaluated experiments and high-fidelity simulations. This paper is focused on data-driven TFS models, specifically on their development using machine learning (ML). Five ML frameworks are introduced including physics-separated ML (PSML or Type I ML), physics-evaluated ML (PEML or Type II ML), physics-integrated ML (PIML or Type III ML), physics-recovered (PRML or Type IV ML), and physics-discovered ML (PDML or Type V ML). The frameworks vary in their performance for different applications depending on the level of knowledge of governing physics, source, type, amount and quality of available data for training. Notably, outlined for the first time in this paper, Type III models present stringent requirements on modeling, substantial computing resources for training, and high potential in extracting value from “big data” in thermal fluid research. Here the current paper demonstrates and investigates ML frameworks in three examples. First, we utilize the heat diffusion equation with a nonlinear conductivity model formulated by convolutional neural networks (CNNs) and feedforward neural networks (FNNs) to illustrate the applications of Type I, Type II, Type III, and Type V ML. The results indicate a preference for Type II ML under deficient data support. Type III ML can effectively utilize field data, potentially generating more robust predictions than Type I and Type II ML. CNN-based closures exhibit more predictability than FNN-based closures, but CNN-based closures require more training data to obtain accurate predictions. Second, we illustrate how to employ Type I ML and Type II ML frameworks for data-driven turbulence modeling using reference works. Third, we demonstrate Type I ML by building a deep FNN-based slip closure for two-phase flow modeling. The results show that deep FNN-based closures exhibit a bounded error in the prediction domain.

42 ENGINEERING↗

Multi-solid and multi-fluid diffuse interface model: Applications to dynamic fracture and fragmentation

We extend the model of diffuse solid–fluid interfaces developed earlier by authors of this paper to the case of arbitrary number of interacting hyperelastic solids. Plastic transformations of solids are taken into account through a Maxwell type model. The specific energy of each solid is given in separable form: it is the sum of a hydrodynamic part of the energy depending only on the density and the entropy, and an elastic part of the energy which is unaffected by the volume change. It allows us to naturally pass to the fluid description in the limit of vanishing shear modulus. In spite of a large number of governing equations, the model has a quite simple mathematical structure: it is a duplication of a single visco-elastic model. The model is well posed both mathematically and thermodynamically: it is hyperbolic and compatible with the second law of thermodynamics. The resulting model can be applied in the situations involving an arbitrary number of fluids and solids. In particular, we show the ability of the model to describe spallation and penetration phenomena occurring during high velocity impacts.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

A cut-cell finite volume – finite element coupling approach for fluid–structure interaction in compressible flow

We present a loosely coupled approach for the solution of fluid–structure interaction problems between a compressible flow and a deformable structure. The method is based on staggered Dirichlet–Neumann partitioning. The interface motion in the Eulerian frame is accounted for by a conservative cut-cell Immersed Boundary method. The present approach enables sub-cell resolution by considering individual cut-elements within a single fluid cell, which guarantees an accurate representation of the time-varying solid interface. The cut-cell procedure inevitably leads to non-matching interfaces, demanding for a special treatment. A Mortar method is chosen in order to obtain a conservative and consistent load transfer. We validate our method by investigating two-dimensional test cases comprising a shock-loaded rigid cylinder and a deformable panel. Moreover, the aeroelastic instability of a thin plate structure is studied with a focus on the prediction of flutter onset. Finally, we propose a three-dimensional fluid–structure interaction test case of a flexible inflated thin shell interacting with a shock wave involving large and complex structural deformations.

42 ENGINEERING↗

A scalable nonlinear fluid–structure interaction solver based on a Schwarz preconditioner with isogeometric unstructured coarse spaces in 3D

Nonlinear fluid-structure interaction (FSI) problems on unstructured meshes in 3D appear many applications in science and engineering, such as vibration analysis of aircrafts and patient-specific diagnosis of cardiovascular diseases. In this work, we develop a highly scalable, parallel algorithmic and software framework for FSI problems consisting of a nonlinear fluid system and a nonlinear solid system, that are coupled monolithically. The FSI system is discretized by a stabilized finite element method in space and a fully implicit backward difference scheme in time. To solve the large, sparse system of nonlinear algebraic equations at each time step, we propose an inexact Newton-Krylov method together with a multilevel, smoothed Schwarz preconditioner with isogeometric coarse meshes generated by a geometry preserving coarsening algorithm. Here ''geometry'' includes the boundary of the computational domain and the wet interface between the fluid and the solid. We show numerically that the proposed algorithm and implementation are highly scalable in terms of the number of linear and nonlinear iterations and the total compute time on a supercomputer with more than 10,000 processor cores for several problems with hundreds of millions of unknowns.

97 MATHEMATICS AND COMPUTING↗

A fully-integrated lattice Boltzmann method for fluid–structure interaction

Here we present a fully-integrated lattice Boltzmann (LB) method for fluid–structure interaction (FSI) simulations that efficiently models deformable solids in complex suspensions and active systems. Our Eulerian method (LBRMT) couples finite-strain solids to the LB fluid on the same fixed computational grid with the reference map technique (RMT). An integral part of the LBRMT is a new LB boundary condition for moving deformable interfaces across different densities. With this fully Eulerian solid–fluid coupling, the LBRMT is well-suited for parallelization and simulating multi-body contact without remeshing or extra meshes. We validate its accuracy via a benchmark of a deformable solid in a lid-driven cavity, then showcase its versatility through examples of soft solids rotating and settling. The LBRMT achieves a spatial convergence rate between first-order and second-order for FSI simulations and is designed for low to intermediate Reynolds number flows with finite inertia at small Mach numbers. With simulations of complex suspensions mixing, we highlight the potential of the LBRMT for studying collective behavior in soft matter and biofluid dynamics.

97 MATHEMATICS AND COMPUTING↗

Fabrication of nanotube arrays on commercially pure titanium and their apatite-forming ability in a simulated body fluid

In this study, we investigated self-organized TiO{sub 2} nanotubes that were grown using anodization of commercially pure titanium at 5 V or 10 V in NH{sub 4}F/NaCl electrolyte. The nanotube arrays were annealed at 450 °C for 3 h to convert the amorphous nanotubes to anatase and then they were immersed in simulated body fluid at 37 °C for 0.5, 1, and 14 days. The purpose of this experiment was to evaluate the apatite-formation abilities of anodized Ti nanotubes with different tube diameters and lengths. The nanotubes that formed on the surfaces of Ti were examined using a field emission scanning electron microscope, X-ray diffraction, and X-ray photoelectron spectroscope. When the anodizing potential was increased from 5 V to 10 V, the pore diameter of the nanotube increased from approximately 24–30 nm to 35–53 nm, and the tube length increased from approximately 590 nm to 730 nm. In vitro testing of the heat-treated nanotube arrays indicated that Ca-P formation occurred after only 1 day of immersion in simulated body fluid. This result was particularly apparent in the samples that were anodized at 10 V. It was also found that the thickness of the Ca-P layer increases as the applied potential for anodized c.p. Ti increases. The average thickness of the Ca-P layer on Ti that was anodized at 5 V and 10 V was approximately 170 nm and 190 nm, respectively, after immersion in simulated body fluid for 14 days. - Highlights: • TiO{sub 2} nanotube on Ti surface was formed by anodic oxidation in a NaCl/NH{sub 4}F solution. • TiO{sub 2} layers show a tube length of 590 nm and 730 nm at 5 V and 10 V, respectively. • After soaking in SBF, Ca-P layer completely covered the entire nanotubular surfaces. • The Ca-P layer was thicker on the Ti surface anodized at 10 V.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

A Poisson equation method for prescribing fully developed non-Newtonian inlet conditions for computational fluid dynamics simulations in models of arbitrary cross-section

Prescribing inlet boundary conditions for computational fluid dynamics (CFD) simulations of internal flow in complex geometries such as anatomical vascular models is challenging. In the absence of patient-specific inlet velocity data, a common approach for long blood vessels is to assume that the inlet flow is fully developed. In vessels of irregular cross section, however, prescribing fully developed conditions is complicated due to the lack of a general closed-form analytical solution. In this study, we develop a simple Poisson equation method for prescribing fully developed inlet conditions for the flow of either Newtonian or non-Newtonian fluids in CFD models of arbitrary cross-section. We first derive the generalized Poisson equation for fully developed flow of a non-Newtonian fluid and we then develop and verify a methodology for numerically computing the solution on any planar boundary domain. In addition, we develop a simple extension of the method for prescribing a non-orthogonal inlet velocity that represents fully developed flow from an upstream tube that is connected to the CFD inlet at a non-orthogonal angle. This may be used to investigate a common source of uncertainty in CFD simulations of internal flow that is due to a lack of information concerning the exact streamwise flow direction at the inlets. Comparison to several Newtonian and non-Newtonian benchmark verification solutions shows the method to be extremely accurate. As a practical demonstration case, we use the method to prescribe fully developed conditions on multiple non-circular inlets for the non-Newtonian flow of blood in a patient-specific model of the inferior vena cava (IVC). Finally, we further demonstrate the utility of the method by performing a sensitivity study using the patient-specific IVC model, wherein we investigate the influence of inlet velocity flow direction on the non-Newtonian IVC hemodynamics. Given its simplicity and computational efficiency, the method is shown to be far superior to alternative approaches for prescribing fully developed inlet conditions in such complicated geometries. In conclusion, to facilitate the adoption of our Poisson equation method, we have distributed our OpenFOAM source code and the associated test cases from this study as open-source software.

97 MATHEMATICS AND COMPUTING↗