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At least 685 records · Page 38

Fungal ecological strategies reflected in gene transcription - a case study of two litter decomposers

Microbial communities interplay with their environment through their functional traits that can be a response or an effect on the environment. Here, we explore how a functional trait-the decomposition of organic matter, can be addressed based on genetic markers and how the expression of these markers reflect ecological strategies of two fungal litter decomposer Gymnopus androsaceus and Chalara longipes. We sequenced the genomes of these two fungi, as well as their transcriptomes at different steps of Pinus sylvestris needles decomposition in microcosms. Our results highlighted that if the gene content of the two species could indicate similar potential decomposition abilities, the expression levels of specific gene families belonging to the glycoside hydrolase category reflected contrasting ecological strategies. Actually, C. longipes, the weaker decomposer in this experiment, turned out to have a high content of genes involved in cell wall polysaccharides decomposition but low expression levels, reflecting a versatile ecology compare to the more competitive G. androsaceus with high expression levels of keystone functional genes. Finally, we established that sequential expression of genes coding for different components of the decomposer machinery indicated adaptation to chemical changes in the substrate as decomposition progressed.

59 BASIC BIOLOGICAL SCIENCES↗

Specific Features of the IR Reflectance and Raman Spectra of Sb{sub 2}Te{sub 3 –} {sub x}Se{sub x} Crystals

A comprehensive study (X-ray phase analysis, Raman spectroscopy, and IR reflectance measurements) of p-Sb{sub 2}Te{sub 3 –} {sub x}Se{sub x} (0 ≤ x ≤ 0.10) crystals synthesized by the Czochralski method is carried out. The X-ray phase data and Raman spectra show that all of the alloy samples under study are rhombohedral crystals in structure, with unit-cell parameters close to those of Sb{sub 2}Te{sub 3} crystals. At the same time, the formation of regions with different degrees of the replacement of Te atoms with Se atoms is observed. The reflectance spectra of the crystals, R(ν), have a characteristic minimum at about 1000 cm{sup –1}. The minimum is attributed to hole plasma vibrations. The plasma minimum systematically shifts to higher frequencies, as the Se content is increased. Calculation of the reflectance spectra in the context of the Drude–Lorentz model satisfactorily describes the experimental data; in this case, it is necessary to take into account also the contribution of optical crystal-lattice vibrations to spectra in the low-frequency region. The calculation makes it possible to determine the optical parameters of the crystals and to estimate the hole effective mass and the optical conductivity.

36 MATERIALS SCIENCE↗

Determining the Concentration of Free Electrons in n-InSb from Far-Infrared Reflectance Spectra with Allowance for Plasmon–Phonon Coupling

Contactless nondestructive testing is a means for determining the concentration of free electrons N in indium antimonide (InSb) samples from far-infrared reflectance spectra recorded at room temperature. A computer program capable of determining the characteristic wave number from the Kramers–Kronig relation is developed. The calculated calibration dependence makes it possible to determine the electron concentration from the known characteristic wave number. It is shown that this dependence is described by a cubic polynomial. In the calculations, the energy dependence of the electron effective mass is taken into account. It is established that, in determining the electron concentration, account must be taken of plasmon–phonon coupling, specifically at N ≤ 5 × 10{sup 17} cm{sup –3}. The systematic error introduced into the determination of N by disregard of plasmon–phonon coupling is estimated. The software elaborated here makes it possible to calculate the electron concentration N from experimental reflectance spectra and to store and process the results. The software is tested by the example of the reflectance spectrum of heavily doped n-InSb.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Lifetime Stability and Microstructure Properties of Cr/B 4 C X-ray Reflective Multilayer Coatings

Here, this paper demonstrates that highly reflective Cr/B 4 C multilayer interference coatings with nanometric layer thicknesses, designed to operate in the soft X-ray photon energy range, have stable reflective performance for a period of 3 years after deposition. The microstructure and chemical composition of layers and interfaces within Cr/B 4 C multilayers is also examined, with emphasis on the B 4 C-on-Cr interface where a significant diffusion layer is formed and on the oxide in the top B 4 C layer. Lastly, multiple characterization techniques (X-ray reflectivity at different photon energies, X-ray photoelectron spectroscopy, transmission electron microscopy, electron diffraction and X-ray diffraction) are employed and the results reveal a consistent picture of the Cr/B 4 C layer structure.

36 MATERIALS SCIENCE↗

Revisiting the Hail Radar Reflectivity–Kinetic Energy Flux Relation by Combining T-Matrix and Discrete Dipole Approximation Calculations to Size Distribution Observations

The retrieval of hail kinetic energy with weather radars or its simulation in numerical models is challenging because of the shape complexity and variable density of hailstones. We combine 3D scans of individual hailstones with measurements of the particle size distributions (PSD) and T-matrix calculations to understand how hail reflectivity Z changes when approximating hailstones as spheroids, as compared to the realistic shapes obtained by 3D scanning technology. Additionally, recent terminal velocity relations are used to compare Z to the hail kinetic energy flux E ˙ . We parameterize the hail backscattering cross sections at L, S, C, and X bands as a function of size between 0.5 and 5.0 cm, matching the range of the observed PSDs. The scattering calculations use the T-matrix method for size parameters below 1.0 and the discrete dipole approximation (DDA) method otherwise. The DDA calculations are done for 48 digital models of realistic hailstones of sizes between 1 and 5 cm. The DDA cross sections are calculated for multiple orientations and averaged assuming a fully random orientation distribution to provide a single value per hailstone. The T-matrix reflectivity assuming solid ice spheres presents negligible differences to DDA results for size parameters below 1.0. Therefore, T matrix was used to fill in the gaps left by the DDA calculations. The results are mapped to the same size bins of the observed PSDs, allowing the calculation of the radar reflectivity. This is then correlated to E ˙ , allowing a potential improvement of past retrieval methods of E ˙ from Z in multiple wavelengths.

54 ENVIRONMENTAL SCIENCES↗

Three-Dimensional Convective–Stratiform Echo-Type Classification and Convectivity Retrieval from Radar Reflectivity

The Echo Classification from COnvectivity (ECCO) algorithm identifies convective and stratiform types of radar echo in three dimensions. It is based on the calculation of reflectivity texture—a combination of the intensity and the heterogeneity of the radar echoes on each horizontal plane in a 3D Cartesian volume. Reflectivity texture is translated into convectivity, which is designed to be a quantitative measure of the convective nature of each 3D radar grid point. It ranges from 0 (100% stratiform) to 1 (100% convective). By thresholding convectivity, a more traditional qualitative categorization is obtained, which classifies radar echoes as convective, mixed, or stratiform. In contrast to previous algorithms, these echo-type classifications are provided on the full 3D grid of the reflectivity field. The vertically resolved classifications, in combination with temperature data, allow for subclassifications into shallow, mid-, deep, and elevated convective features, and low, mid-, and high stratiform regions—again in three dimensions. The algorithm was validated using datasets collected over the U.S. Great Plains during the PECAN field campaign. An analysis of lightning counts shows ~90% of lightning occurring in regions classified as convective by ECCO. A statistical comparison of ECCO echo types with the well-established GPM radar precipitation-type categories show 84% (88%) of GPM stratiform (convective) echo being classified as stratiform (convective) or mixed by ECCO. ECCO was applied to radar grids for the continental United States, the United Arab Emirates, Australia, and Europe, illustrating its robustness and adaptability to different radar grid characteristics and climatic regions.

Radars/Radar observations↗

Temporal reflection from short pump pulses inside a dispersive nonlinear medium: the impact of pump parameters

We have studied, through a series of experiments and numerical simulations, how temporal reflection from an intense pump pulse inside a photonic crystal fiber is affected by parameters of the pump pulse used to form a moving high-index boundary. We used femtosecond pump pulses, which slow down inside the fiber as their spectrum red-shifts because of intrapulse Raman scattering. Temporal reflection of probe pulses occurs from such decelerating pump pulses. We changed the width and chirp of our pump pulses with a 4f pulse shaper capable of providing both spectral filtering and frequency chirping. We found that temporal refection exhibited novel features, to our knowledge, when pump pulses were made wider or chirped. In both cases, two or more reflected pulses were produced at different wavelengths in a specific range of the initial pump-probe delays. Furthermore, numerical simulations reveal that the origin of such novel features is related to the complex nonlinear evolution of pump pulses inside optical fibers.

47 OTHER INSTRUMENTATION↗

Leaf-to-canopy spectral reflectance, February 2018, PA-SLZ: Panama

Canopy reflectance spectra of 37 trees were measured at the Smithsonian Tropical Research Institute (STRI) San Lorenzo Protected Area site (PA-SLZ), utilising the canopy access crane to access fully sunlit leaves. Data were recorded in the middle of the day, with 20–50 measurements for each tree. The canopy structure for each crown was captured using a digital camera. Leaf-level reflectance and leaf demographic composition (age class) was recorded in detail for a > 0.5 meter branch sampled from each canopy tree (corresponding to the position where canopy spectra were measured). This dataset includes processed canopy and leaf-level spectral measurements (*.xlsx), raw spectral data (Spectral Evolution PSR+, *.raw, *.sed), sample details (*.xlsx) and *.pdf summaries containing low resolution photographs of the measured canopies. Full resolution images are available in the related dataset, "Leaf-to-canopy spectral reflectance photographs, February 2018, PA-SLZ: Panama".

54 ENVIRONMENTAL SCIENCES↗

Paintable Heat-Reflective Coatings for Low-Cost Energy Efficient Windows

The major objective of this effort is to manufacture a paintable coating to inexpensively retrofit energy-inefficient windows with a heat-reflective, visibly transparent film. This coating will drastically reduce cooling costs for millions of homes and buildings and lower the Nation’s greenhouse gas emissions. Widespread implementation could reduce the national consumption of electricity for cooling by billions of kWh, saving billions of dollars per year. This improved energy efficiency would decrease CO2 emissions by billions kg per year, the equivalent to removing millions of cars from the road. Although near-IR reflective adhesive films are commercially available products and have demonstrated significant energy efficiency enhancement, high upfront costs largely deter potential consumers across all sectors. The technology developed under this award was proposed to disrupt the building envelope market, by providing an inexpensive coating that can be directly applied by consumers to improve the energy efficiency of virtually all window types. The proof of concept for a paintable, DIY applicable, visibly transparent, and infrared reflective coating was achieved, laying the foundation for future technology development in this area.

14 SOLAR ENERGY↗

Modeling Partial Reflection Paths for Infrasound Analysis

Numerical methods enabling simulation of scattered and partially reflected infrasonic propagation paths produced by interaction with fine-scale structure in the middle atmosphere have been implemented in the infraGA ray tracing software. This capability enables simulation of ensonification in the classical stratospheric “shadow zone” that has been observed during the Humming Roadrunner and LSECE surface explosion campaigns as well as in other data sets. In the case of LSECE, a pair of stations roughly 140 kilometers east of the source location observed arrivals with celerities (horizontal group velocities) slightly slower than observed stratospheric paths at similar azimuths. The arrivals exhibited increasing trace velocity later in the wavetrain indicating a steepening of the arrival path for longer or slower propagation paths. Simulation of partially reflected paths using the updated infraGA software methods finds good agreement between observed and predicted infrasonic ensonification at these locations within the stratospheric shadow zone. Further development of the partial reflection physics and comparison with other data sets is needed to more robustly understand how such anomalous infrasonic signals can be predicted; however, the demonstration of this capability is a promising first step in such analyses.

97 MATHEMATICS AND COMPUTING↗

Identification of Metal Stresses in Arabidopsis thaliana Using Hyperspectral Reflectance Imaging

Industrial accidents, such as the Fukushima and Chernobyl disasters, release harmful chemicals into the environment, covering large geographical areas. Natural flora may serve as biological sensors for detecting metal contamination, such as cesium. Spectral detection of plant stresses typically employs a few select wavelengths and often cannot distinguish between different stress phenotypes. In this study, we apply hyperspectral reflectance imaging in the visible and near-infrared along with multivariate curve resolution (MCR) analysis to identify unique spectral signatures of three stresses in Arabidopsis thaliana : salt, copper, and cesium. While all stress conditions result in common stress physiology, hyperspectral reflectance imaging and MCR analysis produced unique spectral signatures that enabled classification of each stress. As the level of potassium was previously shown to affect cesium stress in plants, the response of A. thaliana to cesium stress under variable levels of potassium was also investigated. Increased levels of potassium reduced the spectral response of A. thaliana to cesium and prevented changes to chloroplast cellular organization. While metal stress mechanisms may vary under different environmental conditions, this study demonstrates that hyperspectral reflectance imaging with MCR analysis can distinguish metal stress phenotypes, providing the potential to detect metal contamination across large geographical areas.

multivariate curve resolution↗

Theoretical Reflectance Spectra of Earth-like Planets through Their Evolutions: Impact of Clouds on the Detectability of Oxygen, Water, and Methane with Future Direct Imaging Missions

In the near-future, atmospheric characterization of Earth-like planets in the habitable zone will become possible via reflectance spectroscopy with future telescopes such as the proposed LUVOIR and HabEx missions. While previous studies have considered the effect of clouds on the reflectance spectra of Earth-like planets, the molecular detectability considering a wide range of cloud properties has not been previously explored in detail. In this study, we explore the effect of cloud altitude and coverage on the reflectance spectra of Earth-like planets at different geological epochs and examine the detectability of O{sub 2},H{sub 2}O, and CH{sub 4} with test parameters for the future mission concept, LUVOIR, using a coronagraph noise simulator previously designed for WFIRST-AFTA. Considering an Earth-like planet located at 5 pc away, we have found that for the proposed LUVOIR telescope, the detection of the O{sub 2} A-band feature (0.76 μm) will take approximately 100, 30, and 10 hr for the majority of the cloud parameter space modeled for the atmospheres with 10%, 50%, and 100% of modern Earth O{sub 2} abundances, respectively. In particular, for the case of ≳50% of modern Earth O{sub 2} abundance, the feature will be detectable with an integration time ≲10 hr as long as there are lower-altitude (≲8 km) clouds with a global coverage of ≳20%. For the 1% of the modern Earth O{sub 2} abundance case, however, it will take more than 100 hr for all the cloud parameters we modeled.

79 ASTRONOMY AND ASTROPHYSICS↗

Experimental Study of Alfvén Wave Reflection from an Alfvén-speed Gradient Relevant to the Solar Coronal Holes

Abstract We report the first experimental detection of a reflected Alfvén wave from an Alfvén-speed gradient under conditions similar to those in coronal holes. The experiments were conducted in the Large Plasma Device at the University of California, Los Angeles. We present the experimentally measured dependence of the coefficient of reflection versus the wave inhomogeneity parameter, i.e., the ratio of the wavelength of the incident wave to the length scale of the gradient. Two-fluid simulations using the Gkeyll code qualitatively agree with and support the experimental findings. Our experimental results support models of wave heating that rely on wave reflection at low heights from a smooth Alfvén-speed gradient to drive turbulence.

79 ASTRONOMY AND ASTROPHYSICS↗

Reflection and transmission of electromagnetic pulses at a planar dielectric interface -- theory and quantum lattice simulations

There is considerable interest in the application of quantum information science to advance computations in plasma physics. A particular point of curiosity is whether it is possible to take advantage of quantum computers to speed up numerical simulations relative to conventional computers. Many of the topics in fusion plasma physics are classical in nature. In order to implement them on quantum computers it will require couching a classical problem in the language of quantum mechanics. Electromagnetic waves are routinely used in fusion experiments to heat a plasma or to generate currents in the plasma. The propagation of electromagnetic waves is described by Maxwell equations with an appropriate description of the plasma as a dielectric medium. Before advancing to the tensor dielectric of a magnetized plasma, this paper considers electromagnetic wave propagation in a one-dimensional inhomogeneous scalar dielectric. The classic theory of scattering of plane electromagnetic waves at a planar interface, separating two different dielectric media, leads to Fresnel equations for reflection and transmission coefficients. In contrast to plane waves, this paper is on the reflection and transmission of a spatially confined electromagnetic pulse. Following an analytical formulation for the scattering of a Gaussian pulse, it is deduced that the maximum transmission coefficient for a pulse is $\sqrt{n_2/n_1}$ times that for a plane wave; the incident and transmitted pulses propagating in dielectric media with refractive indices $n_1$ and $n_2$, respectively. The analytical theory is complemented by numerical simulations using a quantum lattice algorithm for Maxwell equations. The algorithm, based on the Riemann-Silberstein-Weber representation of the electromagnetic fields and expressed in term of qubits, is an interleaved sequence of entangling operators at each lattice site and unitary streaming operators which transmit information from one site to an adjacent lattice site. Besides substantiating results from the theory for Gaussian pulses, numerical simulations show their validity for non-Gaussian pulses. Apart from their time-asymptotic forms, the simulations display an interplay between the incident, reflected, and transmitted pulses in the vicinity of the transition region between two dielectric media.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

The effect of rocket plume contamination on the optical properties of transmitting and reflecting materials

The preliminary results of plume contamination from a 5-pound thrust single-doublet, bipropellant rocket engine on the transmittance of quartz and the reflectance of a silicon monoxide overcoated aluminum mirror are presented. Changes in quartz transmittance were found to be significant and were due to both absorption and scattering effects. Contaminant absorption effects were predominant at the short wavelengths and scattering effects were greatest in the visible wavelengths. Measured changes in mirror reflectance were due primarily to contaminant absorption. Scattering effects were found to be as much as 9 percent of the total reflected energy from the mirror. There were no noticeable chemical or erosion effects on either the quartz or the front surface mirror.

Jack, J. R.↗

Partial reflections of radio waves from the lower ionosphere

The addition of phase difference measurements to partial reflection experiments is discussed, and some advantages of measuring electron density this way are pointed out. The additional information obtained reduces the requirement for an accurate predetermination of collision frequency. Calculations are also made to estimate the errors expected in partial-reflection experiments due to the assumption of Fresnel reflection and to the neglect of coupling between modes. In both cases, the errors are found to be of the same order as known errors in the measurements due to current instrumental limitations.

Connolly, D. J.↗

Normal impingement loads due to small air jets issuing from a base plate and reflecting off a platform for various jet Mach numbers, separation distances, and ambient pressures

An investigation was conducted in a 12.5-meter-diameter vacuum sphere to determine the impingement loads due to air jets issuing from and perpendicular to a circular base and reflecting off a square platform, that is, a simulation of rendezvous maneuvering, docking, launch, impact dampers etc. The nozzles had exit Mach numbers of 1, 3, 5, and 7. The ambient pressures were 0.0006, 5, 225, and 760 torr. Under near-field separation distances and at 0.0006 torr, reflections were significant; and ratios of the impingement force to thrust on both plates in the biplane arrangement varied from about 750 for exit Mach number 1 to 120 for exit Mach number 7. The far-field force ratios were near unity for the platform and zero for the base and indicated few, if any, reflections. Some reversals and rapid changes in loads were obtained at transition distances between the near and far fields. In general, increasing the exit Mach number or ambient pressure reduced the impingement loads.

Hoffman, S.↗

Differential phase measurements of D-region partial reflections

Differential phase partial reflection measurements were used to deduce D region electron density profiles. The phase difference was measured by taking sums and differences of amplitudes received on an array of crossed dipoles. The reflection model used was derived from Fresnel reflection theory. Seven profiles obtained over the period from 13 October 1971 to 5 November 1971 are presented, along with the results from simultaneous measurements of differential absorption. Some possible sources of error and error propagation are discussed. A collision frequency profile was deduced from the electron concentration calculated from differential phase and differential absorption.

Wiersma, D. J.↗