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At least 685 records · Page 38

The tropic response of plant roots to oxygen: oxytropism in Pisum sativum L

Plant roots are known to orient growth through the soil by gravitropism, hydrotropism, and thigmotropism. Recent observations of plant roots that developed in a microgravity environment in space suggested that plant roots may also orient their growth toward oxygen (oxytropism). Using garden pea (Pisum sativum L. cv. Weibul's Apollo) and an agravitropic mutant (cv. Ageotropum), root oxytropism was studied in the controlled environment of a microrhizotron. A series of channels in the microrhizotron allowed establishment of an oxygen gradient of 0.8 mmol mol-1 mm-1. Curvature of seedling roots was determined prior to freezing the roots for subsequent spectrophotometric determinations of alcohol dehydrogenase activity. Oxytropic curvature was observed all along the gradient in both cultivars of pea. The normal gravitropic cultivar showed a maximal curvature of 45 degrees after 48 h, while the agravitropic mutant curved to 90 degrees. In each cultivar, the amount of curvature declined as the oxygen concentration decreased, and was linearly related to the root elongation rate. Since oxytropic curvature occurred in roots exposed to oxygen concentrations that were not low enough to induce the hypoxically responsive protein alcohol dehydrogenase, we suspect that the oxygen sensor associated with oxytropism does not control the induction of hypoxic metabolism. Our results indicate that oxygen can play a critical role in determining root orientation as well as impacting root metabolic status. Oxytropism allows roots to avoid oxygen-deprived soil strata and may also be the basis of an auto-avoidance mechanism, decreasing the competition between roots for water and nutrients as well as oxygen.

short duration↗

Inhibition of auxin movement from the shoot into the root inhibits lateral root development in Arabidopsis

In roots two distinct polar movements of auxin have been reported that may control different developmental and growth events. To test the hypothesis that auxin derived from the shoot and transported toward the root controls lateral root development, the two polarities of auxin transport were uncoupled in Arabidopsis. Local application of the auxin-transport inhibitor naphthylphthalamic acid (NPA) at the root-shoot junction decreased the number and density of lateral roots and reduced the free indoleacetic acid (IAA) levels in the root and [3H]IAA transport into the root. Application of NPA to the basal half of or at several positions along the root only reduced lateral root density in regions that were in contact with NPA or in regions apical to the site of application. Lateral root development was restored by application of IAA apical to NPA application. Lateral root development in Arabidopsis roots was also inhibited by excision of the shoot or dark growth and this inhibition was reversible by IAA. Together, these results are consistent with auxin transport from the shoot into the root controlling lateral root development.

NASA Discipline Plant Biology↗

Update on the Status of the FLUKA Monte Carlo Transport Code

The FLUKA Monte Carlo transport code is a well-known simulation tool in High Energy Physics. FLUKA is a dynamic tool in the sense that it is being continually updated and improved by the authors. Here we review the progresses achieved in the last year on the physics models. From the point of view of hadronic physics, most of the effort is still in the field of nucleus--nucleus interactions. The currently available version of FLUKA already includes the internal capability to simulate inelastic nuclear interactions beginning with lab kinetic energies of 100 MeV/A up the the highest accessible energies by means of the DPMJET-II.5 event generator to handle the interactions for greater than 5 GeV/A and rQMD for energies below that. The new developments concern, at high energy, the embedding of the DPMJET-III generator, which represent a major change with respect to the DPMJET-II structure. This will also allow to achieve a better consistency between the nucleus-nucleus section with the original FLUKA model for hadron-nucleus collisions. Work is also in progress to implement a third event generator model based on the Master Boltzmann Equation approach, in order to extend the energy capability from 100 MeV/A down to the threshold for these reactions. In addition to these extended physics capabilities, structural changes to the programs input and scoring capabilities are continually being upgraded. In particular we want to mention the upgrades in the geometry packages, now capable of reaching higher levels of abstraction. Work is also proceeding to provide direct import into ROOT of the FLUKA output files for analysis and to deploy a user-friendly GUI input interface.

Pinsky, L.↗

Generation of the invariant coefficients of the characteristic polynomial for an nxn matrix

In theories of numerical stability, roots to a characteristic polynomial are sought, which, in the case of the predictor with iterative correction method of numerical integration, are eigenvalues of a matrix whose elements depend on the coefficients used in the integration process. The characteristic polynomial is displayed explicitly in terms of the elements of the characteristic matrix.

Beaudet, P. R.↗

High-resolution profiles for the diffuse interstellar band at 6196 A

The 6196.0 A diffuse feature is observed in various directions towards moderately and slightly reddened stars at high spectral resolution and signal to noise ratio. The feature is found to be symmetric with no fine structure with an equivalent-width upper unit paralleling that of H2. The feature is as narrow as 0.4 A, although much broader in other stars due to cloud blending in the line of sight, and is absent in all observed stars with E(B-V) less than 0.1, and upper limits more than an order of magnitude below values extrapolated from more reddened stars. Upper limits are determined by multiplying the square root of the number of channels in which the line may lie, and another narrow feature, although highly asymmetric, is observed at 6194.6 A. It is concluded that the results increase the possibility of at least one of the diffuse band carriers being a molecule.

Smith, W. H.↗

Clover development during spaceflight: A model system

The development of legume root nodules was studied as a model system for the examination of gravitational effects on plant root development. In order to examine whether rhizobial association with clover roots can be achieved in microgravity, experiments were performed aboard the KC-135 parabolic aircraft and aboard the sounding rocket mission Consort 3. Binding of rhizobia to roots and the initial stages of root nodule development successfully occurred in microgravity. Seedling germination experiments were performed in the sliding block device, the Materials Dispersion Apparatus, aboard STS-37. When significant hydration of the seeds was achieved, normal rates of germination and seedling development were observed.

Guikema, James A.↗

Three-Dimensional Analysis of Nuclear Size, Shape and Displacement in Clover Root Cap Statocytes from Space and a Clinostat

Under normal (l-g) conditions the statocytes of root caps have a characteristic polarity with the nucleus in tight association with the proximal cell wall; but, in altered gravity environments including microgravity (mu-g) and the clinostat (c-g) movement of the nucleus away from the proximal cell wall is not uncommon. To further understand the cause of gravity-dependent nuclear displacement in statocytes, three-dimensional cell reconstruction techniques were used to precisely measure the volumes, shapes, and positions of nuclei in white clover (Trifolium repens) flown in space and rotated on a clinostat. Seeds were germinated and grown for 72 hours aboard the Space Shuttle (STS-63) in the Fluid Processing Apparatus (BioServe Space Technologies, Univ. of Colorado, Boulder). Clinorotation experiments were performed on a two-axis clinostat (BioServe). Computer reconstruction of selected groups of statocytes were made from serial sections (0.5 microns thick) using the ROSS (Reconstruction Of Serial Sections) software package (Biocomputation Center, NASA Ames Research Center). Nuclei were significantly displaced from the tops of cells in mu-g (4.2 +/- 1.0 microns) and c-g (4.9 +/- 1.4 microns) when compared to l-g controls (3.4 +/- 0.8 gm); but, nuclear volume (113 +/- 36 cu microns, 127 +/- 32 cu microns and 125 +/- 28 cu microns for l-g, mu-g and c-g respectively) and the ratio of nuclear volume to cell volume (4.310.7%, 4.211.0% and 4.911.4% respectively) were not significantly dependent on gravity treatment (ANOVA; alpha = 0.05). Three-dimensional analysis of nuclear shape and proximity to the cell wall, however, showed that nuclei from l-g controls appeared ellipsoidal while those from space and the clinostat were more spherically shaped. This change in nuclear shape may be responsible for its displacement under altered gravity conditions. Since the cytoskeleton is known to affect nuclear polarity in root cap statocytes, those same cytoskeletal elements could also control nuclear shape. This alteration in nuclear shape and position in mu-g and c-g when compared to l-g may lead to functional differences in the gravity signaling systems of plants subjected to altered gravity environments.

Smith, J.D.↗

Precision Pointing for the Laser Interferometer Space Antenna (LISA) Mission

The Laser Interferometer Space Antenna (LISA) mission is a planned NASA-ESA gravity wave detector consisting of three spacecraft in heliocentric orbit. Lasers are used to measure distance fluctuations between the proof masses aboard the spacecraft to the picometer level over the 5 million kilometer spacing. Each spacecraft and it's two laser transmit/receive telescopes must be held stable in pointing to less than 8 nanoradians per root Hertz in the frequency band 0.1 mHz to 0.1 Hz. This is accomplished by sensing the pointing error in the received beam and controlling the spacecraft attitude with a set of micronewton thrusters. Requirements, sensors, actuators, control design, and simulations are described in this paper.

Bauer, Frank H.↗

Expression of pH-sensitive green fluorescent protein in Arabidopsis thaliana

This is the first report on using green fluorescent protein (GFP) as a pH reporter in plants. Proton fluxes and pH regulation play important roles in plant cellular activity and therefore, it would be extremely helpful to have a plant gene reporter system for rapid, non-invasive visualization of intracellular pH changes. In order to develop such a system, we constructed three vectors for transient and stable transformation of plant cells with a pH-sensitive derivative of green fluorescent protein. Using these vectors, transgenic Arabidopsis thaliana and tobacco plants were produced. Here the application of pH-sensitive GFP technology in plants is described and, for the first time, the visualization of pH gradients between different developmental compartments in intact whole-root tissues of A. thaliana is reported. The utility of pH-sensitive GFP in revealing rapid, environmentally induced changes in cytoplasmic pH in roots is also demonstrated.

NASA Discipline Plant Biology↗

Comparison of the lipid composition of oat root and coleoptile plasma membranes: lack of short-term change in response to auxin

The total lipid composition of plasma membranes (PM), isolated by the phase partitioning method from two different oat (Avena sativa L.) tissues, the root and coleoptile, was compared. In general, the PM lipid composition was not conserved between these two organs of the oat seedling. Oat roots contained 50 mole percent phospholipid, 25 mole percent glycolipid, and 25 mole percent free sterol, whereas comparable amounts in the coleoptile were 42, 39, and 19 mole percent, respectively. Individual lipid components within each lipid class also showed large variations between the two tissues. Maximum specific ATPase activity in the root PM was more than double the activity in the coleoptile. Treatment of coleoptile with auxin for 1 hour resulted in no detectable changes in PM lipids or extractable ATPase activity. Differences in the PM lipid composition between the two tissues that may define the limits of ATPase activity are discussed.

NASA Discipline Plant Biology↗

Continuous Trailing-Edge Flaps for Primary Flight Control of a Helicopter Main Rotor

The use of continuous trailing-edge flaps (CTEFs) for primary flight control of a helicopter main rotor is studied. A practical, optimized bimorph design with Macro-Fiber Composite actuators is developed for CTEF control, and a coupled structures and computational fluid dynamics methodology is used to study the fundamental behavior of an airfoil with CTEFs. These results are used within a comprehensive rotorcraft analysis model to study the control authority requirements of the CTEFs when utilized for primary flight control of a utility class helicopter. A study of the effect of blade root pitch index (RPI) on CTEF control authority is conducted, and the impact of structural and aerodynamic model complexity on the comprehensive analysis results is presented. The results show that primary flight control using CTEFs is promising; however, a more viable option may include the control of blade RPI, as well.

Thornburgh, Robert P.↗

Velocity, Temperature and Density Measurements in Supersonic Jets

Prediction of the flow field properties in supersonic jets using computational fluid dynamics (CFD) codes is challenging when there is a significant temperature difference between the jet core and the ambient air and/or compressibility effects are substantial. A benchmark set of flow field property data were obtained to assess current CFD capabilities and develop better modeling approaches for these turbulent flow fields where accurate calculation of turbulent heat flux is important. Three different convergent-divergent nozzles were investigated with exit Mach numbers of: 1.36, 1.63 and 2.0 at their perfectly expanded conditions. The conditions of the jet were set to obtain a temperature difference of zero between the jet core and the ambient air, and then the temperature difference was progressively increased, at the same jet Mach number. Particle Image Velocimetry (PIV), spontaneous rotational Raman scattering spectroscopy (SRS), Background Oriented Schlieren (BOS) and probe-based measurements were used to acquire high quality, spatially-resolved measurements of the mean and root mean square (rms) velocities as well as the mean and rms gas temperatures and densities in both hot and cold supersonic jet flows. The non-intrusive flow measurements are compared both against probe measurements and against standard Reynolds averaged Navier-Stokes (RANS) predictions of the supersonic jet flow properties.

Rotational Raman Spectroscopy↗

Velocity, Temperature and Density Measurements in Supersonic Jets

Prediction of the flow field properties in supersonic jets using computational fluid dynamics (CFD) codes is challenging when there is a significant temperature difference between the jet core and the ambient air and/or compressibility effects are substantial. A benchmark set of flow field property data were obtained to assess current CFD capabilities and develop better modeling approaches for these turbulent flow fields where accurate calculation of turbulent heat flux is important. Three different convergent-divergent nozzles were investigated with exit Mach numbers of: 1.36, 1.63 and 2.0 at their perfectly expanded conditions. The conditions of the jet were set to obtain a temperature difference of zero between the jet core and the ambient air, and then the temperature difference was progressively increased, at the same jet Mach number. Particle Image Velocimetry (PIV), spontaneous rotational Raman scattering spectroscopy (SRS), Background Oriented Schlieren (BOS) and probe-based measurements were used to acquire high quality, spatially-resolved measurements of the mean and root mean square (rms) velocities as well as the mean and rms gas temperatures and densities in both hot and cold supersonic jet flows. The non-intrusive flow measurements are compared both against probe measurements and against standard Reynolds averaged Navier-Stokes (RANS) predictions of the supersonic jet flow properties.

Raman Spectroscopy↗

Nutrient Dynamics in a Coupled Terrestrial Biosphere and Land Model (ELM-FATES-CNP)

We present a representation of nitrogen and phosphorus cycling in the Functionally Assembled Terrestrial Ecosystem Simulator, a demographic vegetation model within the Energy Exascale Earth System land model. This representation is modular, and designed to allow testing of multiple hypothetical approaches for carbon-nutrient coupling in plants. Novel model hypotheses introduced in this work include, (a) the controls on plant acquisition of aqueous mineralized nutrients in the soil and (b) fairly straight forward methods of allocating nutrients to specific plant organs and their losses through live plant turnover as well as litter fluxes generated through plant mortality. This combines the new with pre-existing hypotheses (such as nitrogen fixation and soil decomposition) into a system that can accommodate plant-soil dynamics for a large number of size- and functional-type-resolved plant cohorts within a time-since-disturbance-resolved ecosystem. Root uptake of nutrients is governed by fine root biomass, and plants vary in their fine root biomass allocation in order to balance carbon and nutrient limitations to growth. We test the sensitivity of the model to a wide range of parameter variations and structural representations, and in the context of observations at Barro Colorado Island, Panama. A key model prediction is that plants in the high-light-availability canopy positions allocate more carbon to fine roots than plants in low-light understory environments, given the widely different carbon versus nutrient constraints of these two niches within a given ecosystem. This model provides a basis for exploring carbon-nutrient coupling with vegetation demography within Earth system models.

54 ENVIRONMENTAL SCIENCES↗

SCOPE: Spectral cloud optical property estimation using real-time GOES-R longwave imagery

The output of ground-based, solar power generation systems is strongly dependent on cloud cover, which is the main contributor to solar power variability and uncertainty. Cloud optical properties are typically over-simplified in forecasting applications due to the lack of realtime, accurate estimates. In this work, we introduce a method, the Spectral Cloud Optical Property Estimation (SCOPE), for estimating cloud optical properties directly from high-resolution (5-min, 2 km) imagery from Geostationary Operational Environmental Satellite (GOES)-R, which is the newest generation of the GOES system. The SCOPE method couples a two-stream, spectrally resolved radiative model with the longwave GOES-R sensor output to simultaneously estimate the cloud optical depth, cloud top height, and cloud thickness during both day and night at 5-min intervals. The accuracy of SCOPE is evaluated using one year (2018) of downwelling longwave (DLW) radiation measurements from the Surface Radiation Budget Network, which consists of seven sites spread across climatically diverse regions of the contiguous United States. During daytime clear-sky periods, SCOPE predicts DLW within instrument uncertainty (10 W m -2 ) for four of the seven locations, with the remaining locations yielding errors of the order of 11.2, 17.7, and 20.2 W m -2 . For daytime cloudy-sky, daytime all-sky (clear or cloudy), and nighttime all-sky periods, SCOPE achieves root mean square error values of 23.0–34.5 W m -2 for all seven locations. These results, together with the low-latency of the method (1 s per sample), show that SCOPE provides a viable solution to real-time, accurate estimation of cloud optical properties for both day and night.

42 ENGINEERING↗

The ultimate quantum limits on the accuracy of measurements

A quantum generalization of rate-distortion theory from standard communication and information theory is developed for application to determining the ultimate performance limit of measurement systems in physics. For the estimation of a real or a phase parameter, it is shown that the root-mean-square error obtained in a measurement with a single-mode photon level N cannot do better than approximately N exp -1, while approximately exp(-N) may be obtained for multi-mode fields with the same photon level N. Possible ways to achieve the remarkable exponential performance are indicated.

Yuen, Horace P.↗

Rooting the archaebacterial tree: the pivotal role of Thermococcus celer in archaebacterial evolution

The sequence of the 16S ribosomal RNA gene from the archaebacterium Thermococcus celer shows the organism to be related to the methanogenic archaebacteria rather than to its phenotypic counterparts, the extremely thermophilic archaebacteria. This conclusion turns on the position of the root of the archaebacterial phylogenetic tree, however. The problems encountered in rooting this tree are analyzed in detail. Under conditions that suppress evolutionary noise both the parsimony and evolutionary distance methods yield a root location (using a number of eubacterial or eukaryotic outgroup sequences) that is consistent with that determined by an "internal rooting" method, based upon an (approximate) determination of relative evolutionary rates.

Non-NASA Center↗

Early wrong-way response occurs in orthogravitropism of maize roots treated with lithium

Application of lithium ions to tips of roots of Zea mays L. cv. Silver Queen shifts the direction of initial orthogravitropic curvature from downward to upward. The production of this putatively incidental perturbation of orthogravitropic bending kinetics by a pharmacological agent might provide insight into both ortho- and plagiogravitropism. Additionally, the protocol of the experiments bears on recent claims that mucilage external to the root cap plays an essential role in gravitropism. External mucilage was removed before roots were stimulated, yet they reached about 50 degrees gravitropic curvature in an hour.

Non-NASA Center↗