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At least 685 records · Page 38

Contact Challenge of Cattle with Foot-and-Mouth Disease Virus Validates the Role of the Nasopharyngeal Epithelium as the Site of Primary and Persistent Infection

The pathogenesis of foot-and-mouth disease virus (FMDV) in cattle was investigated through early and late stages of infection by use of an optimized experimental model for controlled contact exposure. Time-limited exposure of cattle to FMDV-infected pigs led to primary FMDV infection of the nasopharyngeal mucosa in both vaccinated and nonvaccinated cattle. In nonvaccinated cattle, the infection generalized rapidly to cause clinical disease, without apparent virus amplification in the lungs prior to establishment of viremia. Vaccinated cattle were protected against clinical disease and viremia; however, all vaccinated cattle were subclinically infected, and persistent infection occurred at similarly high prevalences in both animal cohorts. Infection dynamics in cattle were consistent and synchronous and comparable to those of simulated natural and needle inoculation systems. However, the current experimental model utilizes a natural route of virus exposure and is therefore superior for investigations of disease pathogenesis and host response. Deep sequencing of viruses obtained during early infection of pigs and cattle indicated that virus populations sampled from sites of primary infection were markedly more diverse than viruses from vesicular lesions of cattle, suggesting the occurrence of substantial bottlenecks associated with vesicle formation. These data expand previous knowledge of FMDV pathogenesis in cattle and provide novel insights for validation of inoculation models of bovine FMD studies. IMPORTANCE: Foot-and-mouth disease virus (FMDV) is an important livestock pathogen that is often described as the greatest constraint to global trade in animal products. The present study utilized a standardized pig-to-cow contact exposure model to demonstrate that FMDV infection of cattle initiates in the nasopharyngeal mucosa following natural virus exposure. Furthermore, this work confirmed the role of the bovine nasopharyngeal mucosa as the site of persistent FMDV infection in vaccinated and nonvaccinated cattle. The critical output of this study validates previous studies that have used simulated natural inoculation models to characterize FMDV pathogenesis in cattle and emphasizes the importance of continued research of the unique virus-host interactions that occur within the bovine nasopharynx. Specifically, vaccines and biotherapeutic countermeasures designed to prevent nasopharyngeal infection of vaccinated animals could contribute to substantially improved control of FMDV.

cattle↗

A Panoramic View of MXenes via an Atomic Coordination‐Based Design Strategy

Two‐dimensional (2D) transition metal carbides and nitrides, known as MXenes, possess unique physical and chemical properties, enabling diverse applications in fields ranging from energy storage to communication, catalysis, sensing, healthcare, and beyond. Despite extensive research and notable advancements, a fundamental understanding of MXenes’ phase diversity and its connection to their hierarchical precursors, including the intermediate MAX phases and the ancestral bulk phases, remains limited. Here, in this study, it is hypothesized that the atomic coordination environments adopted by transition metal and nonmetallic atoms in their three‐dimensional (3D) bulk precursors may persist in 2D MXenes to govern their phase diversity. Using high‐throughput modeling based on first‐principles density functional theory, a wide range of MXene phases is unveiled and comprehensively evaluate their relative stabilities across a large chemical space. The key to the approach lies in considering various atomic coordination environments drawn from four types of ancestral bulk phases. Through this comprehensive structural library of MXenes, general guiding principles are uncovered, such as a close alignment between the phase stability of MXenes and that of their 3D precursors. These findings introduce a new design strategy in which the atomic coordination environments in bulk phases can serve as reliable predictors for accessing the diverse structural landscape of MXenes.

MXenes↗

Predicting regional and pan-Arctic sea ice anomalies with kernel analog forecasting

Predicting Arctic sea ice extent is a notoriously difficult forecasting problem, even for lead times as short as one month. Motivated by Arctic intraannual variability phenomena such as reemergence of sea surface temperature and sea ice anomalies, we use a prediction approach for sea ice anomalies based on analog forecasting. Traditional analog forecasting relies on identifying a single analog in a historical record, usually by minimizing Euclidean distance, and forming a forecast from the analog’s historical trajectory. An ensemble of analogs is used to make forecasts, where the ensemble weights are determined by a dynamics-adapted similarity kernel, which takes into account the nonlinear geometry on the underlying data manifold. We apply this method for forecasting pan-Arctic and regional sea ice area and volume anomalies from multi-century climate model data, and in many cases find improvement over the benchmark damped persistence forecast. Examples of success include the 3–6 month lead time prediction of Arctic sea ice area, the winter sea ice area prediction of some marginal ice zone seas, and the 3–12 month lead time prediction of sea ice volume anomalies in many central Arctic basins. Finally, we discuss possible connections between KAF success and sea ice reemergence, and find KAF to be successful in regions and seasons exhibiting high interannual variability.

54 ENVIRONMENTAL SCIENCES↗

Hydrology in the Age of Artificial Intelligence: From Fragmentation to Coherent Terrestrial Hydrosphere Science

The rapid rise of machine learning (ML) in hydrology has prompted debate about the discipline's scientific relevance. While ML often outperforms traditional models in streamflow prediction, we argue that this reflects a deeper limitation: persistent fragmentation of hydrological science itself. Narrow focus on isolated components has hindered the development of coherent, scale‐relevant understanding of the integrated terrestrial hydrosphere. This is illustrated, for example, by widely divergent estimates of groundwater–streamflow interactions and of water balance‐implied ongoing storage changes. We argue that hydrology's future lies not in choosing between ML and physics, but in integrating data‐driven and process‐based approaches to advance consistent, realistic, and societally relevant understanding of the terrestrial hydrosphere and its multifaceted roles in the Earth System.

Painter, Scott L. [Oak Ridge National Laboratory (↗

Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions

Abstract Temperate phages are viruses of bacteria that can establish two types of infection: a lysogenic infection in which the virus replicates with the host cell without producing virions, and a lytic infection where the host cell is eventually destroyed, and new virions are released. While both lytic and lysogenic infections are routinely observed in the environment, the ecological and evolutionary processes regulating these viral dynamics are still not well understood, especially for uncultivated virus-host pairs. Here, we characterized the long-term dynamics of uncultivated viruses infecting green sulfur bacteria (GSB) in a model freshwater lake (Trout Bog Lake, TBL). As no GSB virus has been formally described yet, we first used two complementary approaches to identify new GSB viruses from TBL; one in vitro based on flow cytometry cell sorting, the other in silico based on CRISPR spacer sequences. We then took advantage of existing TBL metagenomes covering the 2005–2018 period to examine the interactions between GSB and their viruses across years and seasons. From our data, GSB populations in TBL were constantly associated with at least 2-8 viruses each, including both lytic and temperate phages. The dominant GSB population in particular was consistently associated with two prophages with a nearly 100% infection rate for >10 years. We illustrate with a theoretical model that such an interaction can be stable given a low, but persistent, level of prophage induction in low-diversity host populations. Overall, our data suggest that lytic and lysogenic viruses can readily co-infect the same host population, and that host strain-level diversity might be an important factor controlling virus-host dynamics including lytic/lysogeny switch.

59 BASIC BIOLOGICAL SCIENCES↗

Preserving Symmetries for Variational Quantum Eigensolvers in the Presence of Noise

One of the most promising applications of noisy intermediate-scale quantum computers is the simulation of molecular Hamiltonians using the variational quantum eigensolver (VQE). Here, we show that encoding symmetries of the simulated Hamiltonian in the VQE ansatz reduces both classical and quantum resources compared to other widely available ansatze. Through simulations of the H 2 molecule and of a Heisenberg model on a two-dimensional lattice, we verify that these improvements persist in the presence of noise. This is done using both real IBM devices and classical simulations. We also demonstrate how these techniques can be used to find molecular excited states of various symmetries using a noisy processor. We use error-mitigation techniques to further improve the quality of our results.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Experimental Search for Neutron to Mirror Neutron Oscillations as an Explanation of the Neutron Lifetime Anomaly

We report an unexplained >4σ discrepancy persists between “beam” and “bottle” measurements of the neutron lifetime. A new model proposed that conversions of neutrons n into mirror neutrons n', part of a dark mirror sector, can increase the apparent neutron lifetime by 1% via a small mass splitting Δm between n and n' inside the 4.6 T magnetic field of the National Institute of Standards and Technology Beam Lifetime experiment. A search for neutron conversions in a 6.6 T magnetic field was performed at the Spallation Neutron Source which excludes this explanation for the neutron lifetime discrepancy.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Desorption and Co–Dissolution of Uranium–Bearing Solids During Alkalinity–Enhanced Flushing of Contaminated Sediments

Elevated uranium concentrations in groundwater remain a persistent challenge at contaminated sites. Several sites rely on natural flushing of uranium as a remediation strategy. Uncertainties in conceptual models can cause remediation strategies to underestimate timeframes required to reach remediation goals. In this study, laboratory experiments were conducted to investigate uranium flushing of sediments from a site with persistent groundwater contamination. Six columns were used to simulate alkalinity-enhanced flushing of uranium from sediments, by switching influent alkalinity after ~12 pore volumes. About 20% to 31% of sediment uranium was consistently flushed from the sediments. K d values varied greatly (5.3 to 117 L/kg) but were consistently lower (20% to 50%) during influents with elevated alkalinity. The mass of uranium recovered from the columns also was consistently higher (5% to 80%) during alkalinity-enhanced flushing periods. However, column experiments with sequentially increasing alkalinity showed diminishing returns in uranium elution at higher carbonate concentrations. The loss of flushing efficiency is attributed to significant calcite precipitation at higher alkalinities. Furthermore, the results show that alkalinity-enhanced flushing of uranium could be employed as a viable remediation scheme if calcite precipitation could be minimized in a field application.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Topological Preservation in Temporal Link Prediction

Poster presentation for the Student Intern Symposium introducing zig-zag persistence (ZZP) and a minor result showing that a temporal link prediction model was able to create a representation which preserved the dynamic topology of the trained data.

Campos, Marco Vinicio↗

IROCKS: spatially resolved kinematics of z ∼ 1 star-forming galaxies

We present results from the Intermediate Redshift OSIRIS Chemo-Kinematic Survey (IROCKS) for sixteen z ∼ 1 and one z ∼ 1.4 star-forming galaxies. All galaxies were observed with OSIRIS with the laser guide star adaptive optics system at Keck Observatory. We use rest-frame nebular Hα emission lines to trace morphologies and kinematics of ionized gas in star-forming galaxies on sub-kiloparsec physical scales. We observe elevated velocity dispersions (σ ≳ 50 km s{sup −1}) seen in z > 1.5 galaxies persist at z ∼ 1 in the integrated galaxies. Using an inclined disk model and the ratio of v/σ, we find that 1/3 of the z ∼ 1 sample are disk candidates while the other 2/3 of the sample are dominated by merger-like and irregular sources. We find that including extra attenuation toward H ii regions derived from stellar population synthesis modeling brings star formation rates (SFRs) using Hα and stellar population fit into a better agreement. We explore the properties of the compact Hα sub-component, or “clump,” at z ∼ 1 and find that they follow a similar size–luminosity relation as local H ii regions but are scaled-up by an order of magnitude with higher luminosities and sizes. Comparing the z ∼ 1 clumps to other high-redshift clump studies, we determine that the clump SFR surface density evolves as a function of redshift. This suggests clump formation is directly related to the gas fraction in these systems and may support disk fragmentation as their formation mechanism since gas fraction scales with redshift.

79 ASTRONOMY AND ASTROPHYSICS↗

Structure and thermal evolution of the Galilean satellites

Models of the structure and thermal evolution of the Galilean satellites based on the simplest assumptions are described, the most important complications that are likely to exist are identified, and their consequences are explored. Io's internal energy source is modeled based on dissipation of tidal heating due to gravitational interaction with Jupiter and Europa. A proposed contribution due to electrical heating is discussed. Three arguments bearing on Io's dissipation rate are addressed and models for the satellite's interior are discussed. Callisto and Ganymede are treated together in an attempt to model the reasons for their different appearance. It is concluded that the persistence of Ganymede's surface features is due to a prolonged thermal evolution relative to Callisto, probably caused by a higher radioactive content. Theoretical arguments concerning Europa's thermal evolution are more briefly presented.

Cassen, P. M.↗

The Influence of Synoptic Scales on Low-frequency Modes of Variability

Model analysis and predictablity studies using an equivalent barotropic empirical orthogonal function (EOF) model described in Schubert (1984b) are dicussed. An extensive set of 10-day forecasts was produced for the 12 component version of the model. Comparisons with observed data show apparently useful forecasts for individual winters. However, when averaged over 10 winters, the improvement over persistence was marginal and only one of the EOF's (resembling North Atlantic blocking) showed a statistically significant improvement. These results suggest the need for a more realistic model which includes shorter time scale baroclinic processes and spatial modes capable of efficiently representing the characteristic structures associated with baroclinic instability.

Schubert, S. D.↗

Active control synthesis for flexible space structures excited by persistent disturbances

Both classical and state-space synthesis methods for active control of flexible space structures in the presence of persistent disturbances are presented. The methods exploit the so-called internal model principle for asymptotic disturbance rejection. A generic example of flexible space structures is used to illustrate the simplicity of the proposed design methodologies. The concept of a disturbance rejection filter dipole is introduced from a classical control viewpoint. It is shown that the proposed design methods will invariably make use of non-minimum-phase compensation for a class of noncolocated control problems. The need for tradeoffs between performance and parameter robustness is discussed.

Wie, Bong↗

Hexagonal and nematic phases of chains. I - Correlation functions. II - Phase transitions

The statistical mechanics of a system of semiflexible chains, which can represent polymer liquid crystals, long-chain biomolecules, stiff wormlike micelles, or columns of discotic liquid crystals, are examined. A continuum theory is used to calculate static correlation functions in the hexagonal and nematic phases. Two correlation functions are considered: (1) the structure factor which describes fluctuations in the density; and (2) the director fluctuation spectrum, which describes fluctuations in the local optical axis. In addition, a model is developed for the phase transitions of a system of infinitely long, semiflexible chains which interact through a steric, excluded-volume repulsion. The model yields generic phase diagrams in terms of pressure or density vs. persistence length or temperature.

Selinger, Jonathan V.↗

A Mission to Observe Ice in Clouds from Space

To date there have been multiple satellite missions to observe and retrieve cloud top properties and the liquid in, and precipitation from, clouds. There are currently a few missions that attempt to measure cloud ice properties as a byproduct of other observations. However, we do not yet quantitatively understand the processes that control the water budget of the upper troposphere where ice is the predominant phase, and how these processes are linked to precipitation processes and the radiative energy budget. The ice in clouds either melts into rain or is detrained, and persists, as cirrus clouds affecting the hydrological and energy cycle, respectively. Fully modeling the Earth's climate and improving weather and climate forecasts requires accurate satellite measurements of various cloud properties at the temporal and spatial scales of cloud processes. The uncertainty in knowledge of these ice characteristics is reflected in the large discrepancies in model simulations of the upper tropospheric water budget. Model simulations are sensitive to the partition of ice between precipitation and outflow processes, i.e., to the parameterization of ice clouds and ice processes. This presentation will describe the Submillimeter-wave InfraRed Ice Cloud Experiment (SIRICE) concept, a satellite mission designed to acquire global Earth radiance measurements in the infrared and submillimeter-wave region (183-874 GHz). If successful, this mission will bridge the measurement gap between microwave sounders and shorter-wavelength infrared and visible sensors. The brightness temperatures at submillimeter-wave frequencies are especially sensitive to cirrus ice particle sizes (because they are comparable to the wavelength). This allows for more accurate ice water path estimates when multiple channels are used to probe into the cloud layers. Further, submillimeter wavelengths offer simplicity in the retrieval algorithms because they do not probe into the liquid and near surface portions of clouds, thus requiring only one term of the radiative transfer equation (ice scattering) to relate brightness temperatures to ice. Scientific justification and the SIRICE approach to measuring ice water path and particle size that span a range encompassing both the hydrologically active and radiatively active components of cloud systems will be presented.

Ackerman, S.↗

Observing Ice in Clouds from Space

There are many satellite observations of cloud top properties and the liquid and rain content of clouds, however, we do not yet quantitatively understand the processes that control the water budget of the upper troposphere where ice is the predominant phase, and how these processes are linked to precipitation processes and the radiative energy budget. The ice in clouds in the upper troposphere either melts into rain or is detrained, and persists, as cirrus clouds affecting the hydrological and energy cycle, respectively. Fully modeling the Earth's climate and improving weather and climate forecasts requires accurate satellite measurements of various cloud properties at the temporal and spatial scales of cloud processes. These properties include cloud horizontal and vertical structure, cloud water content and some measure of particle sizes and shapes. The uncertainty in knowledge of these ice characteristics is reflected in the large discrepancies in model simulations of the upper tropospheric water budget. Model simulations are sensitive to the partition of ice between precipitation and outflow processes, i.e., to the parameterization of ice clouds and ice processes. One barrier to achieving accurate global ice cloud properties is the lack of adequate observations at millimeter and submillimeter wavelengths (183-874 GHz). Recent advances in instrumentation have allowed for the development and implementation of an airborne submillimeter-wave radiometer. The brightness temperatures at these frequencies are especially sensitive to cirrus ice particle sizes (because they are comparable to the wavelength). This allows for more accurate ice water path estimates when multiple channels are used to probe into the cloud layers. Further, submillimeter wavelengths offer simplicity in the retrieval algorithms because they do not probe into the liquid and near surface portions of clouds, thus requiring only one term of the radiative transfer equation (ice scattering) to relate brightness temperatures to ice. The next step is a satellite mission designed to acquire global Earth radiance measurements in the submillimeter-wave region, thus bridging the measurement gap between microwave sounders and shorter-wavelength infrared and visible sensors. This presentation provides scientific justification and an approach to measuring ice water path and particle size from a satellite platform that spans a range encompassing both the hydrologically active and radiatively active components of cloud systems.

Ackerman, S.↗

The First X-ray Diffraction Patterns of Clay Minerals from Gale Crater

The Mars Science Laboratory (MSL) Rover, Curiosity spent approx 150 sols at Yellowknife Bay (YKB) studying a section of fluvio-lacustrine sedimentary rocks (with potential indications of volcanic influence), informally known as the Yellowknife Bay formation. YKB lies in a distal region of the Peace Vallis alluvial fan, which extends from the northern rim of Gale Crater toward the dune field at the base of Mt Sharp. Sedimentological and stratigraphic observations are consistent with the Yellowknife Bay formation being part of a distal fan deposit, which could be as young as middle Hesperian to even early Amazonian in age (approx 3.5 to 2.5 Ga). The Yellowknife Bay formation hosts a unit of mudstone called the Sheepbed member. Curiosity obtained powdered rock samples from two drill holes in the Sheepbed Member, named John Klein and Cumberland, and delivered them to instruments in Curiosity. Data from CheMin, a combined X-ray diffraction (XRD)/X-ray fluorescence instrument (XRF), has allowed detailed mineralogical analysis of mudstone powders revealing a clay mineral component of approx 20 wt.% in each sample. The clay minerals are important indicators of paleoenvironmental conditions and sensitive recorders of post-depositional alteration processes. The XRD pattern of John Klein reveals a 021 band consistent with a trioctahedral phyllosilicate. A broad peak at approx 10A with a slight inflexion at approx 12A indicates the presence of 2:1 type clay minerals in the John Klein sample. The trioctahedral nature of the clay minerals, breadth of the basal reflection, and presence of a minor component with larger basal spacing suggests that John Klein contains a trioctahedral smectite (probably saponite), whose interlayer is largely collapsed because of the low-humidity conditions. The XRD patterns show no evidence of corrensite (mixed-layer chlorite/smectite) or chlorite, which are typical diagenetic products of trioctahedral smectites when subjected to burial and heating >60degC in the presence of water. Given estimated geothermal gradients on Mars temperatures <60 degC might still be consistent with (but do not require) moderate burial. However, our ability to identify interstratified minerals is greatly limited by the lack of access to traditional treatments methods used in the lab (e.g., ethylene glycol solvation). Our preferred explanation for the origin of trioctahedral smectites in Sheepbed mudstone is in situ production via reaction of olivine, water and Si-bearing amorphous material, an important mudstone component detected by XRD. Elevated levels of magnetite in the Sheepbed and the trioctahedral monomineralic nature of the clay minerals support this model. These observations, combined with previous studies of olivine stability, support the persistence of circum-neutral hydrous conditions for thousands of years at YKB.

Bristow, Thomas↗

Paleoenvironmental Implications of Clay Minerals at Yellowknife Bay, Gale Crater, Mars

The Mars Science Laboratory (MSL) Rover, Curiosity spent approx 150 sols at Yellowknife Bay (YKB) studying a section of fluvio-lacustrine sedimentary rocks (with potential indications of volcanic influence), informally known as the Yellowknife Bay formation. YKB lies in a distal region of the Peace Vallis alluvial fan, which extends from the northern rim of Gale Crater toward the dune field at the base of Mt Sharp. Sedimentological and stratigraphic observations are consistent with the Yellowknife Bay formation being part of a distal fan deposit, which could be as young as middle Hesperian to even early Amazonian in age (approx. 3.5 to 2.5 Ga). The Yellowknife Bay formation hosts a unit of mudstone called the Sheepbed member. Curiosity obtained powdered rock samples from two drill holes in the Sheepbed Member, named John Klein and Cumberland, and delivered them to instruments in Curiosity. Data from CheMin, a combined X-ray diffraction (XRD)/X-ray fluorescence instrument (XRF), has allowed detailed mineralogical analysis of mudstone powders revealing a clay mineral component of approx. 20 wt.% in each sample. The clay minerals are important indicators of paleoenvironmental conditions and sensitive recorders of post-depositional alteration processes. The XRD pattern of John Klein reveals a 02l band consistent with a trioctahedral phyllosilicate. A broad peak at approx. 10A with a slight inflexion at approx. 12A indicates the presence of 2:1 type clay minerals in the John Klein sample. The trioctahedral nature of the clay minerals, breadth of the basal reflection, and presence of a minor component with larger basal spacing suggests that John Klein contains a trioctahedral smectite (probably saponite), whose interlayer is largely collapsed because of the low-humidity conditions. The XRD patterns show no evidence of corrensite (mixed-layer chlorite/smectite) or chlorite, which are typical diagenetic products of trioctahedral smectites when subjected to burial and heating >60 C in the presence of water. Given estimated geothermal gradients on Mars temperatures <60 C might still be consistent with (but do not require) moderate burial. However, our ability to identify interstratified minerals is greatly limited by the lack of access to traditional treatments methods used in the lab (e.g., ethylene glycol solvation). Our preferred explanation for the origin of trioctahedral smectites in Sheepbed mudstone is in situ production via reaction of olivine, water and Si-bearing amorphous material, an important mudstone component detected by XRD. Elevated levels of magnetite in the Sheepbed and the trioctahedral monomineralic nature of the clay minerals support this model. These observations, combined with previous studies of olivine stability, support the persistence of circum-neutral hydrous conditions for thousands of years at YKB.

MSL↗