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Automated Segmentation and Classification of Coral using Fluid Lensing from Unmanned Airborne Platforms

In recent years, there has been a growing interest among biologists in monitoring the short and long term health of the world's coral reefs. The environmental impact of climate change poses a growing threat to these biologically diverse and fragile ecosystems, prompting scientists to use remote sensing platforms and computer vision algorithms to analyze shallow marine systems. In this study, we present a novel method for performing coral segmentation and classification from aerial data collected from small unmanned aerial vehicles (sUAV). Our method uses Fluid Lensing algorithms to remove and exploit strong optical distortions created along the air-fluid boundary to produce cm-scale resolution imagery of the ocean floor at depths up to 5 meters. A 3D model of the reef is reconstructed using structure from motion (SFM) algorithms, and the associated depth information is combined with multidimensional maximum a posteriori (MAP) estimation to separate organic from inorganic material and classify coral morphologies in the Fluid-Lensed transects. In this study, MAP estimation is performed using a set of manually classified 100 x 100 pixel training images to determine the most probable coral classification within an interrogated region of interest. Aerial footage of a coral reef was captured off the coast of American Samoa and used to test our proposed method. 90 x 20 meter transects of the Samoan coastline undergo automated classification and are manually segmented by a marine biologist for comparison, leading to success rates as high as 85%. This method has broad applications for coastal remote sensing, and will provide marine biologists access to large swaths of high resolution, segmented coral imagery.

algorithms segments classifications↗

Automated Segmentation and Classification of Coral Using Fluid Lensing from Unmanned Airborne Platforms

In recent years, there has been a growing interest among biologists in monitoring the short and long term health of the worlds coral reefs. The environmental impact of climate change poses a growing threat to these biologically diverse and fragile ecosystems, prompting scientists to use remote sensing platforms and computer vision algorithms to analyze shallow marine systems. In this study, we present a novel method for performing coral segmentation and classification from aerial data collected from small unmanned aerial vehicles (sUAV). Our method uses Fluid Lensing algorithms to remove and exploit strong optical distortions created along the air-fluid boundary to produce cm-scale resolution imagery of the ocean floor at depths up to 5 meters. A 3D model of the reef is reconstructed using structure from motion (SFM) algorithms, and the associated depth information is combined with multidimensional maximum a posteriori (MAP) estimation to separate organic from inorganic material and classify coral morphologies in the Fluid-Lensed transects. In this study, MAP estimation is performed using a set of manually classified 100 x 100 pixel training images to determine the most probable coral classification within an interrogated region of interest. Aerial footage of a coral reef was captured off the coast of American Samoa and used to test our proposed method. 90 x 20 meter transects of the Samoan coastline undergo automated classification and are manually segmented by a marine biologist for comparison, leading to success rates as high as 85. This method has broad applications for coastal remote sensing, and will provide marine biologists access to large swaths of high resolution, segmented coral imagery.

algorithms segments classifications↗

Balancing Science Objectives and Operational Constraints: A Mission Planner's Challenge

The Air Force minute sensor technology integration (MSTI-3) satellite's primary mission is to characterize Earth's atmospheric background clutter. MSTI-3 will use three cameras for data collection, a mid-wave infrared imager, a short wave infrared imager, and a visible imaging spectrometer. Mission science objectives call for the collection of over 2 million images within the one year mission life. In addition, operational constraints limit camera usage to four operations of twenty minutes per day, with no more than 10,000 data and calibrating images collected per day. To balance the operational constraints and science objectives, the mission planning team has designed a planning process to e event schedules and sensor operation timelines. Each set of constraints, including spacecraft performance capabilities, the camera filters, the geographical regions, and the spacecraft-Sun-Earth geometries of interest, and remote tracking station deconflictions has been accounted for in this methodology. To aid in this process, the mission planning team is building a series of tools from commercial off-the-shelf software. These include the mission manifest which builds a daily schedule of events, and the MSTI Scene Simulator which helps build geometrically correct scans. These tools provide an efficient, responsive, and highly flexible architecture that maximizes data collection while minimizing mission planning time.

Weldy, Michelle↗

Use of LIDAR systems in measuring certain physical oceanographic parameters

Remote sensing techniques, such as LIDAR, are the only observation methods which are capable of fast scanning over a vast area to produce synoptic views which are necessary for time and space study of the ocean. However, due to the very nature of the way data are collected, all the information thus obtained is confined, to or in the immediate neighborhood of the surface. Nevertheless, all the physical processes in the ocean are controlled mainly by both surface and subsurface parameters; they act and interact among themselves and produce the phenomena we actually observe in time and space. Remote sensing techniques are very effective for those phenomena controlled by surface parameters which account for most of the crucial problems in physical oceanography.

Chen, D. T.↗

Theoretical models for microwave snow response and applications to remote sensing

Two theoretical models were developed to characterize snowpacks: (1) a random medium with a variance, a horizontal correlation length, and a vertical correlation length; and (2) a homogeneous dielectric containing discrete scatters. Theoretical results were matched with experimental data collected from snow ice fields. For snow ice fields the horizontal correlation length is no less than the vertical correlation length signifying a more laminar structure. The correspondence between the continuum random medium and the discrete spherical scatter model can be verified when the vertical correlation length is equal to the horizontal correlation length. The vertically polarized backscattering cross section sigma (sub vv) is always greater than the horizontally polarized backscattering cross section sigma (sub hh) for half space scattering media and may become smaller for a two layer model. In order to account for diurnal change exhibited by snow fields in both the active and passive remote sensing cases, a three layer model with a thin top layer caused by solar illumination must be used.

Kong, J. A.↗

LIMEX '87 ice surface characteristics - Implications for C-band SAR backscatter signatures

Ice surface characterization data collected in 1987, during the Labrador Sea Ice Margin Experiment, are analyzed to estimate the changes in snow and ice properties at the onset of melt. Surface measurements were made from an ice research vessel on several days (some of which had coincident remote-sensing flights) at a number of locations in the marginal ice zone. These data are used as input parameters in a simple scattering model to simulate the effects of variations in material properties upon C-band scattering signatures. Snow moisture and large-scale surface roughness are demonstrated to have the largest effect upon HH polarization scattering cross-section sigma(HH)(O) and large differences are predicted between undeformed floe surfaces and deformed or undulating rough ice surfaces. Using a parametric approach, an approximate picture of rough and smooth ice signatures and their relative contrast are provided. The models reproduce a trend observed in synthetic aperture radar (SAR) images of increasing backscatter contrast between deformed and underformed ice over an early period of warning: such observations are consistent with the results of analysis of SAR images to date. The model also reproduces a calibrated SAR-derived signature with a reasonable degree of accuracy.

Drinkwater, Mark R.↗

Field observations using an AOTF polarimetric imaging spectrometer

This paper reports preliminary results of recent field observations using a prototype acousto-optic tunable filter (AOTF) polarimetric imaging spectrometer. The data illustrate application potentials for geoscience. The operation principle of this instrument is different from that of current airborne multispectral imaging instruments, such as AVIRIS. The AOTF instrument takes two orthogonally polarized images at a desired wavelength at one time, whereas AVIRIS takes a spectrum over a predetermined wavelength range at one pixel at a time and the image is constructed later. AVIRIS does not have any polarization measuring capability. The AOTF instrument could be a complement tool to AVIRIS. Polarization measurement is a desired capability for many applications in remote sensing. It is well know that natural light is often polarized due to various scattering phenomena in the atmosphere. Also, scattered light from canopies is reported to have a polarized component. To characterize objects of interest correctly requires a remote sensing imaging spectrometer capable of measuring object signal and background radiation in both intensity and polarization so that the characteristics of the object can be determined. The AORF instrument has the capability to do so. The AOTF instrument has other unique properties. For example, it can provide spectral images immediately after the observation. The instrument can also allow observations to be tailored in real time to perform the desired experiments and to collect only required data. Consequently, the performance in each mission can be increased with minimal resources. The prototype instrument was completed in the beginning of this year. A number of outdoor field experiments were performed with the objective to evaluate the capability of this new technology for remote sensing applications and to determine issues for further improvements.

Cheng, Li-Jen↗

Satellite-Assisted Particulate Matter (SAPM) for the Models, In situ, and Remote Sensing of Aerosols (MIRA) Working Group

Models, In situ, and Remote sensing of Aerosols (MIRA) is an international working group that provides a forum for collaborations amongst these three atmospheric aerosol communities. MIRA consists of a collection of interdisciplinary and independently funded Topic/Project groups with clear goals and generally characterized by requests for additional scientific data. The Satellite-Assisted Particulate Matter (SAPM) Topic group focuses on the study of fine particulate matter (PM2.5), as it is a major contributor to air pollution and negatively impacts human health. Our group aims to provide intercomparisons of various methods and techniques for estimating surface PM2.5 assisted by satellite remote sensors (passive and active), global aerosol models, and in situ aerosol measurements. The overall motivation of our work is to enhance PM2.5 coverage beyond in situ ground stations, which can be limited. In this presentation, we provide an overview of various PM2.5 estimation approaches by current SAPM team members, as each approach has its own strengths and limitations. One approach uses near-surface aerosol extinction retrievals from the spaceborne Cloud-Aerosol Lidar with Orthogonal Polarization (CALIOP) and an assumed value of mass extinction efficiency to derive PM2.5 concentrations (Toth et al 2019). A study using this method found a promising agreement (R=0.60; slope=0.89) with U.S. Environmental Protection Agency (EPA) in situ PM2.5 measurements over the contiguous United States (CONUS) for a 12-year (2007-2018) period (Toth et al 2022). In a different approach combining spaceborne lidar and a model, the Cloud Aerosol Transport System (CATS) lidar and Goddard Earth Observing System (GEOS) model are blended in an ensemble variational assimilation scheme to retrieve aerosol extinction and convert speciated mass concentrations to total PM2.5. A recent study (Matus et al in prep.) found agreement within 2 μg/m3 over the CONUS on the 2016 annual mean when compared to EPA ground-based measurements. Another study explored trends in city aerosol optical depth (AOD) from a spaceborne passive remote sensor, Moderate Resolution Imaging Spectroradiometer (MODIS), and found that these trends agree well with trends in city surface PM2.5, which provides confidence in the use of city AOD for city PM2.5 trend studies (Vohra et al 2021). In a follow-on study, steep and significant trends (~2.5 to 7.8% a-1) in AOD are found for several South Asian cities (e.g., Bangalore and Hyderabad), suggesting rapid growth in PM2.5 (Vohra et al 2022). Also in this presentation, we report results on our current collective SAPM study of India, a country that exhibits high levels of PM2.5 pollution. We show the temporal (i.e., seasonal) and spatial variability of PM2.5 over India using the CALIOP and CATS+model approaches, comparisons between the estimated PM2.5 from the retrieval schemes, and validation with in situ PM2.5 ground-based observations from the Central Pollution Control Board in India. This region provides us with an excellent case study to test our PM2.5 retrievals in heavily polluted scenes and over a complex and varying topography. The SAPM Topic group actively seeks international participants/collaborators in our group, including those working with in situ aerosol measurements (e.g., ACTRIS). We are interested in aerosol datasets in order to either improve our PM2.5 estimates from various approaches (e.g., using in situ mass scattering/absorption coefficient and aerosol hygroscopic properties for various aerosol species) and/or validate the PM2.5 estimates (e.g., using in situ ground-based PM2.5 concentrations).

Travis D Toth↗

Field and airborne spectral characterization of suspected damage in red spruce (picea rubens) from Vermont

The utilization of remote sensing to monitor forest damage due to acid deposition is investigated. Spectral and water measurements and aircraft radiance data of red spruce and balsam fir, collected in Camels Hump Mountain and Ripton, Vermont between August 13-20, 1984, are analyzed to evaluate the damage levels of the trees. Variations in reflectance features and canopy moisture content are studied. It is observed that damage correlates with elevation (greater damage at higher elevations); xylem water column tension is greater at higher damage sites; and a 'blue shift' is indicated in the spectral data at high damage sites.

Rock, B. N.↗

Assessing Hurricane Katrina Damage to the Mississippi Gulf Coast Using IKONOS Imagery

Hurricane Katrina hit southwestern Mississippi on August 29, 2005, at 10 a.m. CDT as a category 3 event with storm surges up to approximately 9 m and sustained winds of approximately 120 mph. The hurricane ravaged several coastal towns, destroying or severely damaging hundreds of homes. Hurricand Katrina deposited millions of tons of debris and caused severe damage to coastal forests. In response, several Federal agencies have been using a broad range of remotely sensed data (e.g., IKONOS) to aid damage assessment and disaster recovery efforts. This presentation discusses an effort to use IKONOS data for damage assessment, based on data collected over southwestern coastal Mississippi on September 2, 2005.

Spruce, Joseph P.↗

Comparisons of Instantaneous TRMM Ground Validation and Satellite Rain Rate Estimates at Different Spatial Scales

This study provides a comprehensive inter-comparison of instantaneous rain rates observed by the two rain sensors aboard the TRMM satellite with ground data from two regional sites established for long-term ground validation: Kwajalein Atoll and Melbourne, Florida. The satellite rain algorithms utilize remote observations of precipitation collected by the TRMM microwave imager (TMI) and the Precipitation Radar (PR) aboard the TRMM satellite. Three standard Level I1 rain products are generated from operational applications of the TMI, PR and Combined (COM) rain algorithms using rain information collected from the TMI and the PR along the orbital track of the TRMM satellite. In the first part of the study, 0.25 x 0.25 instantaneous rain rates obtained from the TRMM 3668 product were analyzed and compared to instantaneous GV rain rates gridded at a scale of 0.5deg x 0.5. In the second part of the study, TMI, PR, COM and GV rain rates were spatio-temporally matched and averaged at the scale of TMI footprint (- 150 sq km). This study covered a six-year period 1999-2004 and consisted of over 50,000 footprints for each GV site. In the first analysis our results showed that all of the respective rain rate estimates agree well, with some exceptions. The more salient differences were associated with heavy rain events in which one or more of the algorithms failed to properly retrieve these extreme events. Also, it appears that there is a preferred mode of precipitation for TMI rain rates at or near 2 mm/hr over the ocean. This mode was noted over ocean areas of Kwajalein and Melbourne and has been observed in TRMM tropical-global ocean areas as well.

Wolff, David B.↗

Using Satellite Aerosol Retrievals to Monitor Surface Particulate Air Quality

The MODIS and MISR aerosol products were designed nearly two decades ago for the purpose of climate applications. Since launch of Terra in 1999, these two sensors have provided global, quantitative information about column-integrated aerosol properties, including aerosol optical depth (AOD) and relative aerosol type parameters (such as Angstrom exponent). Although primarily designed for climate, the air quality (AQ) community quickly recognized that passive satellite products could be used for particulate air quality monitoring and forecasting. However, AOD and particulate matter (PM) concentrations have different units, and represent aerosol conditions in different layers of the atmosphere. Also, due to low visible contrast over brighter surface conditions, satellite-derived aerosol retrievals tend to have larger uncertainty in urban or populated regions. Nonetheless, the AQ community has made significant progress in relating column-integrated AOD at ambient relative humidity (RH) to surface PM concentrations at dried RH. Knowledge of aerosol optical and microphysical properties, ambient meteorological conditions, and especially vertical profile, are critical for physically relating AOD and PM. To make urban-scale maps of PM, we also must account for spatial variability. Since surface PM may vary on a finer spatial scale than the resolution of standard MODIS (10 km) and MISR (17km) products, we test higher-resolution versions of MODIS (3km) and MISR (1km research mode) retrievals. The recent (July 2011) DISCOVER-AQ campaign in the mid-Atlantic offers a comprehensive network of sun photometers (DRAGON) and other data that we use for validating the higher resolution satellite data. In the future, we expect that the wealth of aircraft and ground-based measurements, collected during DISCOVER-AQ, will help us quantitatively link remote sensed and ground-based measurements in the urban region.

Levy, Robert C.↗

The OSIRIS-REx Spacecraft and the Touch-and-Go Sample Acquisition Mechanism (TAGSAM)

The Origins, Spectral-Interpretation, Resource-Identification, Security and Regolith- Explorer (OSIRIS-REx) spacecraft supports all aspects of the mission science objectives, from extensive remote sensing at the asteroid Bennu, to sample collection and return to Earth. In general, the success of planetary missions requires the collection, return, and analysis of data, which in turn depends on the successful operation of instruments and the host spacecraft. In the case of OSIRIS-REx, a sample-return mission, the spacecraft must also support the acquisition, safe stowage, and return of the sample. The target asteroid is Bennu, a B-class near-Earth asteroid roughly 500 m diameter. The Lockheed Martin-designed and developed OSIRIS-REx spacecraft draws significant heritage from previous missions and features the Touch-and-Go-Sample-Acquisition-Mechanism, or TAGSAM, to collect sample from the surface of Bennu. Lockheed Martin developed TAGSAM as a novel, simple way to collect samples on planetary bodies. During short contact with the asteroid surface, TAGSAM releases curation-grade nitrogen gas, mobilizing the surface regolith into a collection chamber. The contact surface of TAGSAM includes "contact pads", which are present to collect surface grains that have been subject to space weathering. Extensive 1-g laboratory testing, "reduced-gravity" testing (via parabolic flights on an airplane), and analysis demonstrate that TAGSAM will collect asteroid material in nominal conditions, and a variety of off-nominal conditions, such as the presence of large obstacles under the TAGSAM sampling head, or failure in the sampling gas firing. TAGSAM, and the spacecraft support of the instruments, are central to the success of the mission.

Spacecraft↗

An evaluation of rain chemistry data for the John F. Kennedy Space Center, Florida and the University of Central Florida, Orlando

Concern over the effects of Space Shuttle launches prompted the initiation of a rather intense environmental monitoring program. The program included a precipitation monitoring network with 13 precipitation collection sites which were operated for various time periods to baseline precipitation chemistry at the John F. Kennedy Space Center (KSC). One additional site was also established as a remote background site on the Univ. of Central Florida (UCF) campus. One of the 13 sites was converted to a National Atmospheric Deposition Program (NADP) station. Collections and analyses of samples were performed using a number of methodologies during the monitoring period. An evaluation of the data for comparability and utility for acid rain research was performed using the anion/cation, measured conductivity, calculated conductivity, Cl/Na, and Mg/Na ratios. Data collected at all KSC sites between 1977 and 1981, from 1983 to 1985 at the NADP site and at UCF to 1985 are comparable and appropriate for determining acid rain trends. Examination of those comparable data showed a fairly stable pH between 1977 and 1982 and an increase of 0.2 pH units which was observed as an incremental increase between 1982 and 1983 at KSC and UCF.

Madsen, Brooks C.↗

Land Processes Distributed Active Archive Center (LP DAAC) 25th Anniversary Recognition "A Model for Government Partnerships". LP DAAC "History and a Look Forward"

This presentation discusses 25 years of interactions between NASA and the USGS to manage a Land Processes Distributed Active Archive Center (LPDAAC) for the purpose of providing users access to NASA's rich collection of Earth Science data. The presentation addresses challenges, efforts and metrics on the performance.

Land Remote Sensing↗

Ikhana: A NASA UAS Supporting Long Duration Earth Science Missions

NASA's Ikhana unmanned aerial vehicle (UAV) is a General Atomics MQ-9 Predator-B modified to support the conduct of Earth science missions for the NASA Science Mission Directorate through partnerships, other government agencies and universities. Ikhana, a Native American word meaning 'intelligence', can carry over 2000 lbs of atmospheric and remote sensing instruments in the payload bay and external pods. The aircraft is capable of mission durations in excess of 24 hours at altitudes above 40,000 ft. Redundant flight control, avionics, power, and network systems increase the system reliability and allow easier access to public airspace. The aircraft is remotely piloted from a mobile ground control station (GCS) using both C-band line-of-sight and Ku-band over-the-horizon satellite datalinks. NASA's GCS has been modified to support on-site science monitoring, or the downlink data can be networked to remote sites. All ground support systems are designed to be deployable to support global Eart science investigations. On-board support capabilities include an instrumentation system and an Airborne Research Test System (ARTS). The ARTS can host research algorithms that will autonomously command and control on-board sensors, perform sensor health monitoring, conduct data analysis, and request changes to the flight plan to maximize data collection. The ARTS also has the ability to host algorithms that will autonomously control the aircraft trajectory based on sensor needs, (e.g. precision trajectory for repeat pass interferometry) or to optimize mission objectives (e.g. search for specific atmospheric conditions). Standard on-board networks will collect science data for recording and for inclusion in the aircraft's high bandwidth downlink. The Ikhana project will complete GCS development, science support systems integration, external pod integration and flight clearance, and operations crew training in early 2007. A large-area remote sensing mission is currently scheduled for the Summer 2007.

Cobleigh, Brent R.↗

CHESS 2025: Location data for field observations and sampling

This dataset represents geolocation data associated with field observations and sampling from the Colorado Headwaters Ecological Spectroscopy Study (CHESS) during June and July of 2025. Location data were collected using Trimble DA2 Global Navigation Satellite System (GNSS) receivers with Trimble Catalyst 2 centimeter (cm) positioning service and the Environmental Systems Research Institute (Esri) Field Maps mobile app. Files in this data package include meadow site polygons, shrub site polygons, tree site polygons and stem point locations, and Leaf Area Index (LAI) plot polygons (.geojson). The geojson files can be opened with open-source GIS software (e.g, QGIS). A csv file is also provided with point coordinates for all locations. CHESS Project Description: The Colorado Headwaters Ecological Spectroscopy Study (CHESS) comprised a multi-week airborne remote sensing and field observation campaign in the Upper Gunnison Basin, Colorado, conducted in June and July of 2025. Airborne remote sensing was conducted by the National Ecological Observatory Network Airborne Observation Platform (NEON AOP), concurrent with a field campaign run by the Rocky Mountain Biological Laboratory (RMBL), the Lawrence Berkeley National Laboratory (LBNL) and SLAC National Accelerator Laboratory Watershed Function Science Focus Area (SFA), and NASA-JPL (Jet Propulsion Laboratory) Earth Surface Mineral Dust Source Investigation (EMIT) program. Between June 10 and July 18, 2025, the NEON AOP flight team collected high-resolution aerial imaging spectroscopy and Light Detection and Ranging (LiDAR) data over three domains: the Upper East River (CRBU), Almont Triangle (ALMO), and the Upper Taylor Basin (UPTA). In coordination with the flights, a field campaign acquired ground-truth observations, including observations of vegetation composition, foliar traits, forest demography, and subsurface properties in 18 core sampling areas within the domains. Additional surface water observations were taken at over 380 point locations. All CHESS campaign datasets can be found within the CHESS ESS-DIVE data portal: https://data.ess-dive.lbl.gov/portals/chess. Funding Acknowledgment: Field and remote-sensing data acquisition was performed under a grant from the National Aeronautics and Space Administration (80NSSC24K1005). This work was also supported by the Watershed Function Science Focus Area at Lawrence Berkeley National Laboratory funded by the US Department of Energy, Office of Science, Biological and Environmental Research under Contract No. DE-AC02-05CH11231.

2018 NEON and 2025 CHESS Campaigns↗