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Data Science and the Knowledge Discovery Adventure

This talk will cover the important steps involved in the data science and knowledge discovery process: • Initial fact gathering (interview domain experts, review reports, articles, state-of-the-art) • Identify the problem (prediction, classification, statistical analysis, etc.) • Survey supporting data sources • Understand the data (numerical, categorical, text, sampling rate, data quality issues, etc.) • Selecting relevant features and sources • Acquire the data (set up agreements with the data stewards, APIs to download, etc.) • Merge data sources (temporal, spatial, common key, other ontologies...) • Feature Engineering (non linear domain knowledge or physics-based relationships) • Build data processing pipeline (may need to tap into data stream, develop parallel processing algorithm, federated learning etc.) • Build model and test (tune hyper-parameters, cross validation.) • Analyze/Validate results (do the results make sense. Does it answer the original question). • Deploy/Publish (Monitor and assess benefits)

Data science↗

NASA NTRS1995

Sea surface topography fields of the tropical Pacific from data assimilation

Time series of maps of monthly tropical Pacific dynamic topography anomalies from 1979 through 1985 were constructed by means of assimilation of the tide gauge and expendable bathythermograph (XBT) data into a linear model driven by observed winds. Estimates of error statistics were calculated and compared to actual differences between hindcasts and observations. Four experiements were performed as follows: one with no assimilation, one with assimiation of sea level anomaly data from eight selected island tide gauge stations, one with assimilation of dynamic height anomalies derived from XBT data, and one with both XBT and tide gauge data assimilated. Data from seven additional tide gauge stations were withheld from the assimilation process and used for verification in all four experiements. Statistical objective maps based on data alone were also constructed for comparison purposes. The dynamic response of the model without assimilation was, in general, weaker than the observed response. Assimilation resulted in enhanced signal amplitude in all three assimilation experiments. With few exceptions the error estimated generated by the Kalman filter appeared quite reasonable. Since the error processes cannot be assumed to be white or stationary, we could find no straightforward way to test the formal statistical hypothesis that the time series of differences between the filter ouput and the actual observations were drawn from a population with statistics given by the Kalman filter estimaes. We found that the best filter we could devise was still short of the goal of producing a white innovation sequence. Extensive changes in the assumed error statistics make only marginal differences. The same is true for long time and space scale behavior of different models with richer physics and finer resolution. Better data assimilation results will probably require relaxation of the assumptions of stationarity and serial independence of the errors. Formation of such detailed noise models will require longer time series, with the attendant problems of matching very different data sets.

Miller, Robert N.↗

NASA NTRS1977

Evidence for a structure-free state at high solar wind speeds

The variability of the basic solar wind flow parameters in highand low-speed flows is submitted to a statistical analysis. Particular attention is given to the uniformity of solar wind high-speed flow conditions by comparing them with those of the low-speed so-called quiet solar wind. With the exception of the solar wind bulk velocity, the average fractional variation of each of a selected sample of basic solar wind parameters is found to be substantially larger during low-speed flow conditions than during high-speed flow conditions at 1 AU. As a statistical ensemble of events, the only thing steady and uniform about low-speed conditions is the bulk velocity. In all other respects, high-speed flows form a much more uniform ensemble of solar wind conditions than do the low-speed flows. It is concluded that the use of average high-speed flow parameters for comparison with steady-state spherically symmetric models of the coronal expansion is meaningful.

Bame, S. J.↗

NASA NTRS2000

Evaluation of Various Radar Data Quality Control Algorithms Based on Accumulated Radar Rainfall Statistics

The primary function of the TRMM Ground Validation (GV) Program is to create GV rainfall products that provide basic validation of satellite-derived precipitation measurements for select primary sites. A fundamental and extremely important step in creating high-quality GV products is radar data quality control. Quality control (QC) processing of TRMM GV radar data is based on some automated procedures, but the current QC algorithm is not fully operational and requires significant human interaction to assure satisfactory results. Moreover, the TRMM GV QC algorithm, even with continuous manual tuning, still can not completely remove all types of spurious echoes. In an attempt to improve the current operational radar data QC procedures of the TRMM GV effort, an intercomparison of several QC algorithms has been conducted. This presentation will demonstrate how various radar data QC algorithms affect accumulated radar rainfall products. In all, six different QC algorithms will be applied to two months of WSR-88D radar data from Melbourne, Florida. Daily, five-day, and monthly accumulated radar rainfall maps will be produced for each quality-controlled data set. The QC algorithms will be evaluated and compared based on their ability to remove spurious echoes without removing significant precipitation. Strengths and weaknesses of each algorithm will be assessed based on, their abilit to mitigate both erroneous additions and reductions in rainfall accumulation from spurious echo contamination and true precipitation removal, respectively. Contamination from individual spurious echo categories will be quantified to further diagnose the abilities of each radar QC algorithm. Finally, a cost-benefit analysis will be conducted to determine if a more automated QC algorithm is a viable alternative to the current, labor-intensive QC algorithm employed by TRMM GV.

Robinson, Michael↗

DOE OSTI2019

Impact of protein blocking on enzymatic saccharification of bagasse from sugarcane clones

Lignin plays an important functional and structural role in plants, but also contributes to the recalcitrance of lignocellulosic biomass to hydrolysis. This study addresses the influence of lignin in hydrolysis of sugarcane bagasse from conventional bred lines (UFV260 and UFV204) that were selected from 432 field-grown clones. In addition to higher sugar production, bagasse clone UFV204 had a small, but statistically significant, lower insoluble lignin content compared with clone UFV260 (15.5% vs, 16.6%) and also exhibited a significantly higher cellulose conversion to glucose (81.3% vs. 63.3%) at a cellulase loading of 5 (filter paper unit) FPU/g of glucan or 3 FPU/g total solids for liquid hot water pretreated bagasse (200°C, 10 min). The enzyme loading was further decreased by 50% to 2.5 FPU/g glucan and resulted in a similar glucan conversion (88.5%) for clone UFV204 when the bagasse was preincubated with bovine serum albumin at pH 4.8 and nonproductive binding of cellulase components was blocked. Comparison of Langmuir adsorption isotherms and differential adsorption of the three major cellulolytic enzyme components endoglucanase, cellobiohydrolase, and β-glucosidase help to explain differences due to lignin content.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2018

Hybrid feature selection approach for power transformer fault diagnosis based on support vector machine and genetic algorithm

To further improve fault diagnosis accuracy, a new hybrid feature selection approach combined with a genetic algorithm (GA) and support vector machine (SVM) is presented in this study. Adaptive synthetic technique and arctangent transformation method are adopted to improve the statistical property of the training set (IEC TC10 dataset). Five filter methods based on different evaluation metrics are employed to rank 48 input features derived from dissolved gas analysis (DGA). Then, feature combination methods are applied to aggregate feature ranks and form a lower-dimension candidate feature subset. The GA-SVM model is implemented to optimise parameters and select optimal feature subsets. 5-fold cross-validation accuracy of the GA-SVM is used to evaluate fault diagnosis capability of feature subsets and finally, a novel subset is determined as the optimal feature subset. Accuracy comparison manifests the superiority of the optimal feature subsets over that of conventional approaches. Besides, generalisation and robustness of the optimal subset are validated by testing DGA samples from the local power utility. Results indicate that the optimal feature subset obtained by the proposed method can significantly improve the accuracies of power transformer fault diagnosis.

Kari, Tusongjiang↗

DOE OSTI2023

The Calar Alto Legacy Integral Field Area survey: extended and remastered data release

ABSTRACT This paper describes the extended data release (eDR) of the Calar Alto Legacy Integral Field Area (CALIFA) survey. It comprises science-grade quality data for 895 galaxies obtained with the Potsdam Multi Aperture Spectograph/PPak instrument at the 3.5-m telescope at the Calar Alto Observatory along the last 12 yr, using the V500 setup [3700–7500 Å, 6 Å/full-width at half-maximum (FWHM)] and the CALIFA observing strategy. It includes galaxies of any morphological type, star formation stage, a wide range of stellar masses (∼107–1012 M⊙), at an average redshift of ∼0.015 (90 per cent within 0.005 < z < 0.05). Primarily selected based on the projected size and apparent magnitude, we demonstrate that it can be volume corrected resulting in a statistically limited but representative sample of the population of galaxies in the nearby Universe. All the data were homogeneous re-reduced, introducing a set of modifications to the previous reduction. The most relevant is the development and implementation of a new cube-reconstruction algorithm that provides with an (almost) seeing-limited spatial resolution (FWHMPSF ∼ 1.0 arcsec). To illustrate the usability and quality of the data, we extracted two aperture spectra for each galaxy (central 1.5 arcsec and fully integrated), and analyse them using pyFIT3D. We obtain a set of observational and physical properties of both the stellar populations and the ionized gas, that have been compared for the two apertures, exploring their distributions as a function of the stellar masses and morphologies of the galaxies, comparing with recent results in the literature.

Sánchez, S. F. (ORCID:0000000164449307)↗

DOE OSTI2022

Data-directed search for new physics based on symmetries of the SM

We propose exploiting symmetries (exact or approximate) of the Standard Model (SM) to search for physics Beyond the Standard Model (BSM) using the data-directed paradigm (DDP). Symmetries are very powerful because they provide two samples that can be compared without requiring simulation. Focusing on the data, exclusive selections which exhibit significant asymmetry can be identified efficiently and marked for further study. Using a simple and generic test statistic which compares two matrices already provides good sensitivity, only slightly worse than that of the profile likelihood ratio test statistic which relies on the exact knowledge of the signal shape. This can be exploited for rapidly scanning large portions of the measured data, in an attempt to identify regions of interest. We also demonstrate that weakly supervised Neural Networks could be used for this purpose as well.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2017

Comparing Submillimeter Polarized Emission with Near-infrared Polarization of Background Stars for the Vela C Molecular Cloud

We present a large-scale combination of near-infrared (near-IR) interstellar polarization data from background starlight with polarized emission data at submillimeter wavelengths for the Vela C molecular cloud. The near-IR data consist of more than 6700 detections probing a range of visual extinctions between 2 and 20 mag in and around the cloud. The submillimeter data were collected in Antarctica by the Balloon-borne Large Aperture Submillimeter Telescope for Polarimetry. This is the first direct combination of near-IR and submillimeter polarization data for a molecular cloud aimed at measuring the “polarization efficiency ratio” (R{sub eff}), a quantity that is expected to depend only on grain-intrinsic physical properties. It is defined as p{sub 500}/(p{sub I}/τ{sub V}), where p {sub 500} and p {sub I} are polarization fractions at 500 μm and the I band, respectively, and τ{sub V} is the optical depth. To ensure that the same column density of material is producing both polarization from emission and from extinction, we conducted a careful selection of near-background stars using 2MASS, Herschel, and Planck data. This selection excludes objects contaminated by the Galactic diffuse background material as well as objects located in the foreground. Accounting for statistical and systematic uncertainties, we estimate an average R{sub eff} value of 2.4 ± 0.8, which can be used to test the predictions of dust grain models designed for molecular clouds when such predictions become available. The ratio R{sub eff} appears to be relatively flat as a function of the cloud depth for the range of visual extinctions probed.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2020

Systematic identification of cis -regulatory variants that cause gene expression differences in a yeast cross

Sequence variation in regulatory DNA alters gene expression and shapes genetically complex traits. However, the identification of individual, causal regulatory variants is challenging. Here, we used a massively parallel reporter assay to measure the cis-regulatory consequences of 5832 natural DNA variants in the promoters of 2503 genes in the yeast Saccharomyces cerevisiae. We identified 451 causal variants, which underlie genetic loci known to affect gene expression. Several promoters harbored multiple causal variants. In five promoters, pairs of variants showed non-additive, epistatic interactions. Causal variants were enriched at conserved nucleotides, tended to have low derived allele frequency, and were depleted from promoters of essential genes, which is consistent with the action of negative selection. Causal variants were also enriched for alterations in transcription factor binding sites. Models integrating these features provided modest, but statistically significant, ability to predict causal variants. This work revealed a complex molecular basis for cis-acting regulatory variation.

60 APPLIED LIFE SCIENCES↗

NASA NTRS1965

Ground testing at MSFC

The large-scale field collection of acoustic data and their analysis are described in this review. The entire sound-field program has the purpose of solving complex problems of excessive noise propagation associated with the static test firing of large space-booster powerplants. The site of data collection has been Mississippi Test Facility (MTF), where far-field sound-propagation and correlated meteorological measurements were initiated in 1962. The statistical evaluation of sound-measurement data shows that the polar distribution of sound in the springtime (at MTF) is determined mainly by the temperature field of the atmosphere. Greater deformation of sound-intensity polar distribution occurs in the autumn as a result of the influence of the wind field. The data on sound attenuation as a function of distance from its source revealed attenuation in excess of the expected magnitude. The excess was mainly between 1 and 10 kilometers from the source, with maximum attenuation (17 to 18 decibels) near 6 kilometers. Excess sound attenuation was compared with calculated sound dispersion. For all sound frequencies in all seasons the deviation between reference and empirical attenuation values formed a bell-shaped distribution on a semilogarithmic plot. The physical causes for the sound- attenuation behavior are considered to be atmospheric diffraction and scattering effects. Statistical analysis of sod-intensity extremes indicated amplification of the sound signals by focusing which could be expected along selected azimuths. Empirical amplification values showed the maximum occurring in winter (50 decibels at 22 kilometers). For the analysis of correlation between empirical sound data and local atmospheric sound- propagation conditions, #e concept of analytical classification of sound-velocity profiles has been developed. Examination of over a quarter-million individual sound-velocity profiles indicates that 33 profile types for heights up to 3 kilometers constitute the empirical possibilities of sound-propagation conditions in southeastern United States. Since the focusing qualities of each sound- velocity profile can be determined as a class characteristic, the overall probabilities of focusing occurrence can he obtained. The severity of focusing, as based upon lateral spread of focusing areas, has been determined. The data for MTF indicate focusing is most severe in winter, with the direction toward east being most affected. Sound propagation is a fluctuating phenomenon because atmospheric conditions vary continuously. A measuring system for analyzing the nonstationary sound-propagation phenomena has been established. The analysis of the acoustic fluctuation data is sup- posed to provide "dynamic” perturbation functions of sound, which are to be superimposed on the related characteristic sound-velocity-profile type. The ultimate result of the program will be the establishment of reliable contingency tables showing the relationship between atmospheric parameters and far-field sound intensities. These data will be the basis for more accurate sound-propagation forecasting for static firing tests.

STATIC TESTING↗

NASA NTRS1973

The redshift-magnitude relation for quasi-stellar objects.

It is shown that the best-fitting slope of the redshift-magnitude relation for the most luminous quasi-stellar object in each redshift range is 4.3 plus or minus 0.4. However, the steepness of this slope is due primarily to the lowest redshift range including 3C 273, without which it is 2.1 plus or minus 0.6. The slopes of the second and third brightest QSOs are 3.1 plus or minus 0.6 and 3.2 plus or minus 0.6, respectively, markedly less than the slope of 5 which is expected for a Friedmann universe with q(0) = +1. Although the departure of the slope from 5 mag per decade is statistically significant at about 95% confidence, due to the heterogeneity and incompleteness of the sample there may be a systematic selectional bias not accounted for either in this analysis or in that of Bahcall and Hills. Consequently, no definite pronouncement can be made until a complete sample of adequate size is examined.

Burbidge, G. R.↗

NASA NTRS1979

Fracture strength of silicon solar cells

A test program was developed to determine the nature and source of the flaw controlling the fracture of silicon solar cells and to provide information regarding the mechanical strength of cells. Significant changes in fracture strengths were found in seven selected in-process wafer-to-cell products from a manufacturer's production line. The fracture strength data were statistically analyzed and interpreted in light of the exterior flaw distribution of the samples.

Chen, C. P.↗

NASA NTRS1981

Performance of the real-time array signal combiner during the Voyager mission

During the Voyager Mission each Deep Space Station used its 64 meter antenna together with a 34 meter antenna to form an array. Data were selected from the Saturn encounter period from November 2 to November 13, 1980, to analyze the signal combiner performance. A statistical analysis of the residual gain data from all of the arrayed Deep Space Stations indicates that the Real Time Combiner is operating within the designed accuracy range of 0.2 + or - 0.05 dB around the theoretical gain. A decrease in the residual gain value appears to correlate with an increase in antenna elevation, which may be directly related to the changing antenna gain with elevation. Overall, the combined signal to noise ratio is improved by an average of 0.62 + or - 0.15 dB over the 64 meter signal to noise ratio alone.

Bartok, C. D.↗

NASA NTRS1981

Test methods and design allowables for fibrous composites; Proceedings of the Symposium, Dearborn, MI, October 2, 3, 1979

Papers are presented on special test methods for fibrous composites for quantifying design material properties. Studies are divided into four major areas: (1) new and special test methods, including those for transverse tensile strength, shear modulus, longitudinal compression, and impact resistance; (2) special test methods and analysis, including off-axes and angle-plied tension and compression, fracture and fatigue, and biaxial stress states; (3) design allowables, describing procedures for setting and selecting design allowables in general, and also for composite aircraft structures, graphite/polyimide bolted joints, cost-effective mechanical property characterization, statistical considerations, intraply hybrids, and compression and fatigue; (4) design allowables for special applications, describing procedures for buckling of cylindrical components, proof load of pressure vessels, strength of composite joints, and environmental effects and creep. The papers provide considerable information for test methods and for composite analysis of these methods, as well as tests and procedures for establishing design allowables.

Chamis, C. C.↗

NASA NTRS1989

Materials properties numerical database system established and operational at CINDAS/Purdue University

A computerized comprehensive numerical database system on the mechanical, thermophysical, electronic, electrical, magnetic, optical, and other properties of various types of technologically important materials such as metals, alloys, composites, dielectrics, polymers, and ceramics has been established and operational at the Center for Information and Numerical Data Analysis and Synthesis (CINDAS) of Purdue University. This is an on-line, interactive, menu-driven, user-friendly database system. Users can easily search, retrieve, and manipulate the data from the database system without learning special query language, special commands, standardized names of materials, properties, variables, etc. It enables both the direct mode of search/retrieval of data for specified materials, properties, independent variables, etc., and the inverted mode of search/retrieval of candidate materials that meet a set of specified requirements (which is the computer-aided materials selection). It enables also tabular and graphical displays and on-line data manipulations such as units conversion, variables transformation, statistical analysis, etc., of the retrieved data. The development, content, accessibility, etc., of the database system are presented and discussed.

Ho, C. Y.↗

NASA NTRS1993

ROSAT-IUE observations of symbiotic stars. The x ray morphology of high latitude associations

The purposes of this grant included: to provide for continuing investigations of the x-ray properties of a class of interacting binaries known as symbiotic stars through analysis of their detection statistics in the ROSAT All-Sky Survey and simultaneous IUE observations; and to obtain and analyze ROSAT images of selected high latitude OB star associations, in order to permit multi-wavelength dissection of their contents and energetics. The first study is expected to result in enhanced information on mass transfer and accretion in such systems, and provide a more quantitative basis for interpretation of the spectra of these and similar stellar and extragalactic systems. This particular effort represents NASA support for an approved collaboration between the PI and the ROSAT Team at MPE Garching. In the second study, we seek to correlate the strength with which the diffuse clouds have been shocked and the recent star formation triggered, namely, the O and B stars of the Association, as well as nearby T Tauri stars. The large scale X-ray emission in deep ROSAT PSPC images will be compared with the optical, infrared, and radio topology of nearby supernova remnants, molecular clouds, and the distribution of massive stars in the regions. This should enable us to test whether the star formation triggering shocks originate from in the galactic plane (nearby supernovae) or from the collision of infalling matter with the disk material (galactic fountain dynamics).

Stencel, Robert E.↗

NASA NTRS1992

The Fifth Calibration/Data Product Validation Panel Meeting

The minutes and associated documents prepared from presentations and meetings at the Fifth Calibration/Data Product Validation Panel meeting in Boulder, Colorado, April 8 - 10, 1992, are presented. Key issues include (1) statistical characterization of data sets: finding statistics that characterize key attributes of the data sets, and defining ways to characterize the comparisons among data sets; (2) selection of specific intercomparison exercises: selecting characteristic spatial and temporal regions for intercomparisons, and impact of validation exercises on the logistics of current and planned field campaigns and model runs; and (3) preparation of data sets for intercomparisons: characterization of assumptions, transportable data formats, labeling data files, content of data sets, and data storage and distribution (EOSDIS interface).

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