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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 703 records · Page 39
All sourcesNASA NTRSDOE OSTI
DOE OSTI2015

A methyltransferase required for proper timing of the vernalization response in Arabidopsis

Significance Proper timing of flowering is a key factor in reproductive success. Certain plant species require prolonged cold exposure during winter to flower in the spring; however, how plants measure the duration of cold exposure is not well understood. In this study, we describe the identification of a methyltransferase that is required for proper measurement of the duration of cold exposure.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2017

Mechanics dictate where and how freshwater planarians fission

Asexual freshwater planarians reproduce by tearing themselves into two pieces by a process called binary fission. The resulting head and tail pieces regenerate within about a week, forming two new worms. Understanding this process of ripping oneself into two parts poses a challenging biomechanical problem. Because planarians stop “doing it” at the slightest disturbance, this remained a centuries-old puzzle. In this paper, we focus on Dugesia japonica fission and show that it proceeds in three stages: a local constriction (“waist formation”), pulsation—which increases waist longitudinal stresses—and transverse rupture. We developed a linear mechanical model with a planarian represented by a thin shell. The model fully captures the pulsation dynamics leading to rupture and reproduces empirical time scales and stresses. It asserts that fission execution is a mechanical process. Moreover, we show that the location of waist formation, and thus fission, is determined by physical constraints. Together, our results demonstrate that where and how a planarian rips itself apart during asexual reproduction can be fully explained through biomechanics.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2018

Cytoprotective metal-organic frameworks for anaerobic bacteria

We report a strategy to uniformly wrap Morella thermoacetica bacteria with a metal-organic framework (MOF) monolayer of nanometer thickness for cytoprotection in artificial photosynthesis. The catalytic activity of the MOF enclosure toward decomposition of reactive oxygen species (ROS) reduces the death of strictly anaerobic bacteria by fivefold in the presence of 21% O 2 , and enables the cytoprotected bacteria to continuously produce acetate from CO 2 fixation under oxidative stress. The high definition of the MOF–bacteria interface involving direct bonding between phosphate units on the cell surface and zirconium clusters on MOF monolayer, provides for enhancement of life throughout reproduction. The dynamic nature of the MOF wrapping allows for cell elongation and separation, including spontaneous covering of the newly grown cell surface. Finally, the open-metal sites on the zirconium clusters lead to 600 times more efficient ROS decomposition compared with zirconia nanoparticles.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Evolution of a σ–(c-di-GMP)–anti-σ switch

Filamentous actinobacteria of the genus Streptomyces have a complex lifecycle involving the differentiation of reproductive aerial hyphae into spores. We recently showed c-di-GMP controls this transition by arming a unique anti-σ, RsiG, to bind the sporulation-specific σ, WhiG. The Streptomyces venezuelae RsiG–(c-di-GMP) 2 –WhiG structure revealed that a monomeric RsiG binds c-di-GMP via two E(X) 3 S(X) 2 R(X) 3 Q(X) 3 D repeat motifs, one on each helix of an antiparallel coiled-coil. Here we show that RsiG homologs are found scattered throughout the Actinobacteria. Strikingly, RsiGs from unicellular bacteria descending from the most basal branch of the Actinobacteria are small proteins containing only one c-di-GMP binding motif, yet still bind their WhiG partners. Our structure of a Rubrobacter radiotolerans (RsiG) 2 –(c-di-GMP) 2 –WhiG complex revealed that these single-motif RsiGs are able to form an antiparallel coiled-coil through homodimerization, thereby allowing them to bind c-di-GMP similar to the monomeric twin-motif RsiGs. Further data show that in the unicellular actinobacterium R. radiotolerans , the (RsiG) 2 –(c-di-GMP) 2 –WhiG regulatory switch controls type IV pilus expression. Phylogenetic analysis indicates the single-motif RsiGs likely represent the ancestral state and an internal gene-duplication event gave rise to the twin-motif RsiGs inherited elsewhere in the Actinobacteria. Thus, these studies show how the anti-σ RsiG has evolved through an intragenic duplication event from a small protein carrying a single c-di-GMP binding motif, which functions as a homodimer, to a larger protein carrying two c-di-GMP binding motifs, which functions as a monomer. Consistent with this, our structures reveal potential selective advantages of the monomeric twin-motif anti-σ factors.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Mutations in artificial self-replicating tiles: A step toward Darwinian evolution

Significance In nature, mutation is the first step of evolution, where it provides the genetic variation for the natural selection to act. Here we take a system of artificial self-replicating tiles, DNA origami, that exhibit templated reproduction. We can generate a small fraction of mutations by introducing a mismatch in hybridization between parent and daughter. We can modify the origami functionality to affect the growth rate of the mutated species, giving it less or more evolutionary advantage, and to become dominant in several generations. The introduction of mutations into an artificial self-replicating system provides new directions for research into self-assembly processes.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2025

Audible enclaves crafted by nonlinear self-bending ultrasonic beams

Delivering audible content to a targeted listener without disturbing others is paramount in audio engineering. However, achieving this goal has long been challenging due to the diffraction of low-frequency (long-wavelength) audio waves in linear acoustics. Here, we introduce an approach for creating remote audio spots, dubbed audible enclaves, by harnessing the local nonlinear interaction of two self-bending ultrasonic beams with distinct spectra. The self-bending ultrasonic beams created by acoustic metasurfaces, though inaudible, can bypass obstacles such as human heads. At their intersection behind obstacles, highly localized audible enclaves are formed due to the local nonlinear interactions. Additionally, we demonstrate the ultrabroadband capabilities of our metasurface-based implementation both numerically and experimentally, spanning from 125 Hz to 4 kHz (6 octave bands), covering the majority of the audible frequency range. The practicality of our proposed technique is underscored by its compact implementation size (0.16 m, equivalent to 0.06 wavelengths at 125 Hz), as well as its robust performance under wideband transient audio signal excitation and in a common room with reverberations. Our proposed audible enclaves hold significant potential for various applications in advanced audio engineering, including private speech communications, immersive spatial audio reproduction, and high-resolution sound/quiet zone control.

Science & Technology - Other Topics↗
DOE OSTI2015

Muscle segment homeobox genes direct embryonic diapause by limiting inflammation in the uterus

Embryonic diapause (delayed implantation) is a reproductive strategy widespread in the animal kingdom. Under this condition, embryos at the blastocyst stage become dormant simultaneously with uterine quiescence until environmental or physiological conditions are favorable for the survival of the mother and newborn. Under favorable conditions, activation of the blastocyst and uterus ensues with implantation and progression of pregnancy. Although endocrine factors are known to participate in this process, the underlying molecular mechanism coordinating this phenomenon is not clearly understood. We recently found that uterine muscle segment homeobox (Msx) transcription factors are critical for the initiation and maintenance of delayed implantation in mice. To better understand why Msx genes are critical for delayed implantation, we compared uterine proteomics profiles between littermate floxed (Msx1/Msx2f/f) mice and mice with uterine deletion of Msx genes (Msx1/Msx2d/d) under delayed conditions. In Msx1/Msx2d/d uteri, pathways including protein translation, ubiquitin-proteasome system, inflammation, chaperone-mediated protein folding, and endoplasmic reticulum (ER) stress were enriched, and computational modeling showed intersection of these pathways on inflammatory responses. Indeed, increases in the ubiquitin-proteasome system and inflammation conformed to proteotoxic and ER stress in Msx1/Msx2d/d uteri under delayed conditions. Interestingly, treatment with a proteasome inhibitor bortezomib further exacerbated ER stress in Msx1/Msx2d/d uteri with aggravated inflammatory response, deteriorating rate of blastocyst recovery and failure to sustain delayed implantation. This study highlights a previously unrecognized role for Msx in preventing proteotoxic stress and inflammatory responses to coordinate embryo dormancy and uterine quiescence during embryonic diapause.

embryonic diapause↗
DOE OSTI2015

Recapitulating the Structural Evolution of Redox Regulation in Adenosine 5′-Phosphosulfate Kinase from Cyanobacteria to Plants

In plants, adenosine 5'-phosphosulfate (APS) kinase (APSK) is required for reproductive viability and the production of 3'-phosphoadenosine 5'-phosphosulfate (PAPS) as a sulfur donor in specialized metabolism. Previous studies of the APSK from Arabidopsis thaliana (AtAPSK) identified a regulatory disulfide bond formed between the N-terminal domain (NTD) and a cysteine on the core scaffold. This thiol switch is unique to mosses, gymnosperms, and angiosperms. To understand the structural evolution of redox control of APSK, we investigated the redox-insensitive APSK from the cyanobacterium Synechocystis sp. PCC 6803 (SynAPSK). Crystallographic analysis of SynAPSK in complex with either APS and a non-hydrolyzable ATP analog or APS and sulfate revealed the overall structure of the enzyme, which lacks the NTD found in homologs from mosses and plants. A series of engineered SynAPSK variants reconstructed the structural evolution of the plant APSK. Biochemical analyses of SynAPSK, SynAPSK H23C mutant, SynAPSK fused to the AtAPSK NTD, and the fusion protein with the H23C mutation showed that the addition of the NTD and cysteines recapitulated thiol-based regulation. Here, these results reveal the molecular basis for structural changes leading to the evolution of redox control of APSK in the green lineage from cyanobacteria to plants.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Apomixis in Farmers’ Fields: Overview, Case Studies from Forage Grasses and Considerations for Future Apomictic Crops

Apomixis occurs naturally in several commercially important species from diverse plant families. While in some of these species apomixis is yet to be exploited in breeding schemes aimed at fixing heterosis, genetic progress and cultivar development, in other species apomixis has been integrated at different stages of breeding. Some of the most relevant examples come from the subfamily Panicoideae, the second largest subfamily of the Poaceae, and are the main focus of this review. The subfamily encompasses many tropical and sub-tropical grasses and grains of worldwide economic importance. Apomictic tropical forages are prime examples of how apomixis can be used and exploited in the development of marketable cultivars, which are essential to the meat and milk production industries globally. The main commercial forages used as grass pastures covering millions of hectares in tropical and sub-tropical regions are polyploids exhibiting gametophytic apomixis that belong to the genus Urochloa spp. (brachiariagrasses) and to the species Megathyrsus maximus (guineagrass). Buffel grass (Cenchrus ciliaris) and Paspalum spp. are other important apomictic forages bred and used in these regions. Breeding involves large germplasm collections from the centers of origin of the species, and for most of them, sexually reproducing diploid plants have been found. Chromosomically duplicated plants that maintain sexual reproduction are used in crosses with apomictic genotypes for the development and selection of cultivars to be marketed or used as progenitors in subsequent breeding cycles. The peculiarities of each genus/species breeding programs, the cultivars obtained from these programs, and the impact of use of marker assisted selection in cultivar development are presented. In addition, the test or implementation of new technologies such as high throughput phenotyping, and the use of machine learning methods for trait prediction and genomic selection are positively impacting the selection and speed of development of new polyploid apomictic cultivars. Furthermore, genetic transformation techniques, including genome editing, provide an additional layer for design of tailor-made, customer-oriented cultivars.

Cenchrus↗
DOE OSTI2023

Ceci N’est Pas Une Bombe: Lessons from a Field Experiment Using Neutron and Gamma Measurements to Confirm the Absence of Nuclear Weapons

In March 2023, the UN Institute for Disarmament Research held a verification experiment that included a mockup onsite inspection at a former military facility in the municipality of Menzingen, Switzerland. The experiment included a visit to the site by an inspection team, accompanied by the host team. Among other activities, radiation measurements were used to confirm the non-nuclear nature of selected items stored onsite. In this paper, we discuss the neutron and gamma measurement systems used during the experiment and the inspection protocols followed to confirm the absence of nuclear weapons. Furthermore, results from the experiment and a laboratory reproduction are presented, before concluding with lessons learned for how absence-confirmation measurements can help support verification of future arms control agreements.

98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗
DOE OSTI2023

Effects of ionising radiation exposure in offspring and next generations: dosimetric aspects and uncertainties

The impact of the exposure to ionizing radiation in the offspring and next generation has been investigated in the last decades and currently is the subject of study of the ICRP Task Group 121. Studying the effects of radiation exposure in pre-conceptional and post-conceptional phases can be a challenge since potential effects to the fetus vary depending on the stage of fetal development. Epidemiology and radiobiology studies are the two sources of information one can use to correlate the radiation dose to the human body and tissues and the resulting effects. For a proper evaluation of the outcomes of such studies, and a correct appraisal of the exposure/dose-effect relationship, (i) reliable dosimetry, (ii) accurate reporting, and (iii) reproducibility of results are required. Although variables related to dose, including for instance source of radiation, geometry of irradiation, dose rate etc., are usually known, especially in radiobiology studies, often important details of the irradiation are not reported. In conclusion, based on standards developed by the National Cancer Institute (NCI), the National Institute of Allergy and Infectious Disease (NIAID) and the National Institute of Standards and Technology (NIST), a review of the scientific studies used by the UNSCEAR to estimate the risk of hereditary effects, and by the ICRP in its current recommendations, was conducted to evaluate the way dosimetry was reported. Dosimetry and the related uncertainties were not adequately described in the vast majority of those studies. This does not necessarily mean that they do not provide relevant information, however it prevents from a thorough verification and reproduction of their findings. In order to guarantee the reliability and robustness of the process of revision of the estimates of risk and detriment it is therefore considered mandatory to include a careful check of the new relevant literature with regard to the criteria on the completeness and reproducibility of the dosimetric information.

63 RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTAN↗
DOE OSTI2025

Natural variation in growth and yield to waterlogging across climate-diverse pennycress accessions

Many winter annual crops, such as pennycress ( Thlaspi arvense L.), are subjected to heavy precipitation events during their growing season. Therefore, it is essential to identify pennycress accessions with natural variation in flooding resilience. We used climate modeling data to assess spring soil moisture levels in the geographic origins of 471 natural pennycress accessions. We selected 34 accessions with variation in predicted soil moisture and tested survivability under prolonged waterlogging at the rosette stage. It took seven weeks for the first accessions to die, indicating that pennycress is hardy to prolonged waterlogging at the vegetative stage. Furthermore, we chose ‘susceptible’ and ‘tolerant’ accessions to waterlog for one week at the reproductive stage, the growth stage aligned with spring rainfall. Six accessions had significantly reduced seed weight at maturity and two had minimal impacts on growth and seed yield after waterlogging and can be further explored for adaptive traits.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2011

SMALL-SCALE STRUCTURE IN THE SLOAN DIGITAL SKY SURVEY AND {Lambda}CDM: ISOLATED {approx}L{sub *} GALAXIES WITH BRIGHT SATELLITES

We use a volume-limited spectroscopic sample of isolated galaxies in the Sloan Digital Sky Survey to investigate the frequency and radial distribution of luminous (M{sub r} {approx}< -18.3) satellites like the Large Magellanic Cloud (LMC) around {approx}L{sub *} Milky Way (MW) analogs and compare our results object-by-object to {Lambda}CDM predictions based on abundance matching in simulations. We show that 12% of MW-like galaxies host an LMC-like satellite within 75 kpc (projected), and 42% within 250 kpc (projected). This implies {approx}10% have a satellite within the distance of the LMC, and {approx}40% of L{sub *} galaxies host a bright satellite within the virialized extent of their dark matter halos. Remarkably, the simulation reproduces the observed frequency, radial dependence, velocity distribution, and luminosity function of observed secondaries exceptionally well, suggesting that {Lambda}CDM provides an accurate reproduction of the observed universe to galaxies as faint as L {approx} 10{sup 9} L{sub sun} on {approx}50 kpc scales. When stacked, the observed projected pairwise velocity dispersion of these satellites is {sigma} {approx_equal} 160 km s{sup -1}, in agreement with abundance-matching expectations for their host halo masses. Finally, bright satellites around L{sub *} primaries are significantly redder than typical galaxies in their luminosity range, indicating that environmental quenching is operating within galaxy-size dark matter halos that typically contain only a single bright satellite. This redness trend is in stark contrast to the MW's LMC, which is unusually blue even for a field galaxy. We suggest that the LMC's discrepant color might be further evidence that it is undergoing a triggered star formation event upon first infall.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2011

THE HYPERACTIVE L DWARF 2MASS J13153094-2649513: CONTINUED EMISSION AND A BROWN DWARF COMPANION

We report new observations of the unusually active, high proper motion L5e dwarf 2MASS J13153094-2649513. Optical spectroscopy with Magellan/MagE reveals persistent nonthermal emission, with narrow H I Balmer, Na I and K I lines all observed in emission. Low-resolution near-infrared spectroscopy with the Infrared Telescope Facility/SpeX Spectrograph indicates the presence of a low-temperature companion, which is resolved through multi-epoch laser guide star adaptive optics imaging at the W. M. Keck Observatory. The co-moving companion is separated by 338 {+-} 4 mas, and its relative brightness ({Delta}K{sub s} = 5.09 {+-} 0.10) makes this system the second-most-extreme flux ratio very-low-mass binary identified to date. Resolved near-infrared spectroscopy with Keck/OSIRIS identifies the companion as a T7 dwarf. The absence of Li I absorption in combined-light optical spectroscopy constrains the system age to {approx}>0.8-1.0 Gyr, while the system's kinematics and unusually low mass ratio (M{sub 2}/M{sub 1} = 0.3-0.6) suggest that it is even older. A coevality test of the components also indicates an older age, but reveals discrepancies between evolutionary and atmosphere model fits of the secondary, which are likely attributable to poor reproduction of its near-infrared spectrum. With a projected separation of 6.6 {+-} 0.9 AU, the 2MASS J1315-2649 system is too widely separated for mass exchange or magnetospheric interactions to be powering its persistent nonthermal emission. Rather, the emission is probably chromospheric in nature, consistent with an inversion in the age-activity relation in which strong magnetic fields are maintained by relatively old and massive ultracool dwarfs.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2014

Heavy elements in globular clusters: The role of asymptotic giant branch stars

Recent observations of heavy elements in globular clusters reveal intriguing deviations from the standard paradigm of the early galactic nucleosynthesis. If the r-process contamination is a common feature of halo stars, s-process enhancements are found in a few globular clusters only. We show that the combined pollution of asymptotic giant branch (AGB) stars with a mass ranging between 3 to 6 M {sub ☉} may account for most of the features of the s-process overabundance in M4 and M22. In these stars, the s process is a mixture of two very different neutron-capture nucleosynthesis episodes. The first is due to the {sup 13}C(α, n){sup 16}O reaction and takes place during the interpulse periods. The second is due to the {sup 22}Ne(α, n){sup 25}Mg reaction and takes place in the convective zones generated by thermal pulses. The production of the heaviest s elements (from Ba to Pb) requires the first neutron burst, while the second produces large overabundances of light s (Rb, Sr, Y, Zr). The first mainly operates in the less massive AGB stars, while the second dominates in the more massive. From the heavy-s/light-s ratio, we derive that the pollution phase should last for 150 ± 50 Myr, a period short enough compared to the formation timescale of the globular cluster system, but long enough to explain why the s-process pollution is observed in a few cases only. With few exceptions, our theoretical prediction provides a reasonable reproduction of the observed s-process abundances, from Sr to Hf. However, Ce is probably underproduced by our models, while Rb and Pb are overproduced. Possible solutions are discussed.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2015

THE MAGELLANIC STREAM SYSTEM. I. RAM-PRESSURE TAILS AND THE RELICS OF THE COLLISION BETWEEN THE MAGELLANIC CLOUDS

We have analyzed the Magellanic Stream (MS) using the deepest and the most resolved H i survey of the Southern Hemisphere (the Galactic All-Sky Survey). The overall Stream is structured into two filaments, suggesting two ram-pressure tails lagging behind the Magellanic Clouds (MCs), and resembling two close, transonic, von Karman vortex streets. The past motions of the Clouds appear imprinted in them, implying almost parallel initial orbits, and then a radical change after their passage near the N(H i) peak of the MS. This is consistent with a recent collision between the MCs, 200–300 Myr ago, which has stripped their gas further into small clouds, spreading them out along a gigantic bow shock, perpendicular to the MS. The Stream is formed by the interplay between stellar feedback and the ram pressure exerted by hot gas in the Milky Way (MW) halo with n{sub h} = 10{sup −4} cm{sup −3} at 50–70 kpc, a value necessary to explain the MS multiphase high-velocity clouds. The corresponding hydrodynamic modeling provides the currently most accurate reproduction of the whole H i Stream morphology, of its velocity, and column density profiles along L{sub MS}. The “ram pressure plus collision” scenario requires tidal dwarf galaxies, which are assumed to be the Cloud and dSph progenitors, to have left imprints in the MS and the Leading Arm, respectively. The simulated LMC and SMC have baryonic mass, kinematics, and proper motions consistent with observations. This supports a novel paradigm for the MS System, which could have its origin in material expelled toward the MW by the ancient gas-rich merger that formed M31.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2015

Development of interatomic potentials appropriate for simulation of devitrification of Al 90 Sm 10 alloy

In this study, a semi-empirical potential for the Al 90 Sm 10 alloy is presented. The potential provides satisfactory reproduction of pure Al properties, the formation energies of a set of Al–Sm crystal phases with Sm content about 10%, and the structure of the liquid Al 90 Sm 10 alloy. During molecular dynamics simulation in which the liquid alloy is cooled at a rate of 10 10 K/s, the developed potential produces a glass structure with lower ab initio energy than that produced by ab initio molecular dynamics (AIMD) itself using a typical AIMD cooling rate of 8 ∙10 13 K/s. Based on these facts the developed potential should be suitable for simulations of phase transformations in the Al 90 Sm 10 alloy.

36 MATERIALS SCIENCE↗
DOE OSTI2017

Tractable flux-driven temperature, density, and rotation profile evolution with the quasilinear gyrokinetic transport model QuaLiKiz

Quasilinear turbulent transport models are a successful tool for prediction of core tokamak plasma profiles in many regimes. Their success hinges on the reproduction of local nonlinear gyrokinetic fluxes. We focus on significant progress in the quasilinear gyrokinetic transport model QuaLiKiz (Bourdelle et al 2016 Plasma Phys. Control. Fusion 58 014036), which employs an approximated solution of the mode structures to significantly speed up computation time compared to full linear gyrokinetic solvers. Optimisation of the dispersion relation solution algorithm within integrated modelling applications leads to flux calculations $\times {10}^{6-7}$ faster than local nonlinear simulations. This allows tractable simulation of flux-driven dynamic profile evolution including all transport channels: ion and electron heat, main particles, impurities, and momentum. Furthermore, QuaLiKiz now includes the impact of rotation and temperature anisotropy induced poloidal asymmetry on heavy impurity transport, important for W-transport applications. Application within the JETTO integrated modelling code results in 1 s of JET plasma simulation within 10 h using 10 CPUs. Simultaneous predictions of core density, temperature, and toroidal rotation profiles for both JET hybrid and baseline experiments are presented, covering both ion and electron turbulence scales. The simulations are successfully compared to measured profiles, with agreement mostly in the 5%–25% range according to standard figures of merit. QuaLiKiz is now open source and available at www.qualikiz.com.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗