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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 703 records · Page 39
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

De novo design of obligate ABC-type heterotrimeric proteins

The de novo design of three protein chains that associate to form a heterotrimer (but not any of the possible two-chain heterodimers) and that can drive the assembly of higher-order branching structures is an important challenge for protein design. We designed helical heterotrimers with specificity conferred by buried hydrogen bond networks and large aromatic residues to enhance shape complementary packing. We obtained ten designs for which all three chains cooperatively assembled into heterotrimers with few or no other species present. Crystal structures of a helical bundle heterotrimer and extended versions, with helical repeat proteins fused to individual subunits, showed all three chains assembling in the designed orientation. We used these heterotrimers as building blocks to construct larger cyclic oligomers, which were structurally validated by electron microscopy. Our three-way junction designs provide new routes to complex protein nanostructures and enable the scaffolding of three distinct ligands for modulation of cell signaling.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Crystal structure of domain of unknown function 507 (DUF507) reveals a new protein fold

The crystal structure of the domain of unknown function family 507 protein from Aquifex aeolicus is reported (AaDUF507, UniProt O67633, 183 residues). The structure was determined in two space groups (C222 1 and P3 2 21) at 1.9 Å resolution. The phase problem was solved by molecular replacement using an AlphaFold model as the search model. AaDUF507 is a Y-shaped α-helical protein consisting of an anti-parallel 4-helix bundle base and two helical arms that extend 30-Å from the base. The two crystal structures differ by a 25° rigid body rotation of the C-terminal arm. The tertiary structure exhibits pseudo-twofold symmetry. The structural symmetry mirrors internal sequence similarity: residues 11–57 and 102–148 are 30% identical and 53% similar with an E-value of 0.002. In one of the structures, electron density for an unknown ligand, consistent with nicotinamide or similar molecule, may indicate a functional site. Docking calculations suggest potential ligand binding hot spots in the region between the helical arms. Structure-based query of the Protein Data Bank revealed no other protein with a similar tertiary structure, leading us to propose that AaDUF507 represents a new protein fold.

36 MATERIALS SCIENCE↗
DOE OSTI2021

Deciphering helix assembly in the heliconical nematic phase via tender resonant X-ray scattering

Being a link between a uniaxial nematic and a chiral nematic, the twist bend nematic (N TB ) has been an intriguing topic for research over the last decade as a key to understanding chirality generation. Accurate description and understanding of resonance effects in helical structures provide crucial knowledge on the phase behavior beyond positional ordering. We examined the manifestation of resonance effects in N TB via tender resonant X-ray scattering (TReXS) at the sulfur K-edge. For the first time we demonstrate quantitatively that the energy dependence of the scattering peak in the N TB phase follows the energy dependence of the complex refractive indices measured by X-ray absorption. Furthermore, taking advantage of molecular energy calculation, we decipher the distinct helical pitch variation trend for symmetric/asymmetric dimers from the perspective of hybridization and reveal the strong effect of substituting oxygen for sulfur atoms on the helical pitch and the thermal helix extension.

36 MATERIALS SCIENCE↗
DOE OSTI2026

Spatially resolved polarization swings in the supermassive binary black hole candidate OJ 287 with first Event Horizon Telescope observations

We present the first Event Horizon Telescope 1.3 mm observations of the supermassive binary black hole candidate OJ 287. The observations achieved an unprecedented angular resolution of 18 μas and reveal significant structural and polarization variability over just five days, marking the shortest timescale on which such changes have been directly imaged in this source. The inner jet exhibits a twisted ridgeline structure, with features displaying apparent superluminal motions up to about 22 c. The linear polarization maps reveal three main polarized features whose electric-vector position angles (EVPAs) change substantially over the time span of our observations, including a component with a radial polarization consistent with being produced by a recollimation shock. Most notably, we directly resolved two innermost jet components whose EVPAs rotate in opposite directions. The faster component, moving at 2.4 ± 0.9 μas/day (17.4 ± 6.5 c), exhibits counterclockwise EVPA swings of roughly 3.7° per day, while the slower component, with a proper motion of 1.4 ± 0.3 μas/day (10.2 ± 2.2 c), rotates clockwise at approximately 2.5° per day. Previous studies inferred helical magnetic fields in AGN jets from time-resolved or integrated polarization variability but lacked the angular resolution to directly image this effect. Our results provide spatially resolved evidence that a helical magnetic field threads the jet’s collimation and acceleration zone, ruling out models based on the superposition of unresolved components. Our analysis suggests that propagating shocks interact with a Kelvin–Helmholtz plasma instability, illuminating different phases of the helical magnetic field and producing the observed polarization spatial and temporal variability. Moreover, our model naturally accounts for the more rapid polarization rotation observed in the faster moving component. Our model predicts even more rapid swings in polarization, which could be tested with future observations featuring a more densely sampled time coverage.

OJ 287↗
DOE OSTI2020

Effects of temperature and density evolution in MHD simulations of HIT-SI

The helicity injected torus-steady inductive (HIT-SI) experiment uses steady inductive helicity injection to form a spheromak equilibrium and sustain the structure against resistive decay. Helicity injection is performed using two half-tori “injectors” connected to the main plasma volume, whose fields are oscillated in an AC manner. The properties of the sustained spheromak equilibrium have been experimentally observed to vary with the frequency of the injector oscillation, producing higher current gains and more-symmetric and outwardly shifted current centroids with higher frequency. A computational scan of injector frequency using the 3D MHD code PSI-Tet, which models the entire HIT-SI plasma volume including the injectors, has been performed, including a comparison of the results using the full Hall MHD model to those obtained using a simplified “zero-beta” (constant temperature and density) model. The results of both PSI-Tet models are also compared with experimental data and with simulations using the NIMROD code, which does not model the injector regions. The results of the PSI-Tet simulations show that the average temperature and current gain increase with injector frequency, in agreement with experimental trends. The simulations also show qualitative changes in the dynamics of several quantities with increasing injector frequency, such as density oscillations and current evolution. However, the outward shift and symmetrizing of the current centroid, observed experimentally, are not observed in these MHD simulations, indicating that unresolved or excluded dynamics may be important.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2020

Extended magnetohydrodynamics simulations of thin-foil Z-pinch implosions with comparison to experiments

Cylindrical foil liners, with foil thicknesses on the order of 400 nm, are often used in university-scale Z-pinch experiments (~1 MA in 100 ns) to study physics relevant to inertial confinement fusion efforts on larger-scale facilities (e.g., the MagLIF effort on the 25-MA Z facility at Sandia National Laboratories). The use of ultrathin foil liners typically requires a central support rod to maintain the structural integrity of the liner target assembly prior to implosion. The radius of this support rod sets a limit on the maximum convergence ratio achievable for the implosion. In recent experiments with a support rod and a preimposed axial magnetic field, helical instability structures in the imploding foil plasma were found to persist as the foil plasma stagnated on the rod and subsequently expanded away from the rod. We have now used the 3D extended magnetohydrodynamics simulation code PERSEUS (which includes Hall physics) to study these experiments. The results suggest that it is the support rod which is responsible for the helical structures persisting beyond stagnation. Furthermore, we find that as the radius of the support rod decreases (i.e., as the convergence ratio increases), the integrity and persistence of the helical modes diminish. In the limit with no support rod, we find that the structure of the final stagnation column is governed by the structure of the central precursor plasma column. Furthermore, these simulation results and their comparisons to experiment are presented.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2022

Resonant alpha particle loss in stellarators

Particle resonances in stellarators can produce islands in the space of passing particle orbits without the presence of an unstable Alfven mode, provided the period of the resonance matches the period of the equilibrium magnetic field. In this case, the equilibrium itself plays the role of a mode amplitude, and the islands appear on surfaces where the orbital helicity matches the field period. At low energy, these surfaces are given by the field line helicity, but at higher energy, cross field drift causes them to move. The resonances are also felt by trapped particles bouncing back and forth on surfaces with matching helicity. The periodic variation of B along these orbits produces local wells, giving loss due to drift while trapped in a well. Stellarator designs that have equilibrium-induced resonance islands exhibit anomalous alpha particle loss and are unsuitable for reactors.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2024

Controlling morphology and improving reproducibility of magnetized liner inertial fusion experiments

X-ray imaging indicates magnetized liner inertial fusion (MagLIF) stagnation columns have a complicated quasi-helical structure with significant variations in x-ray brightness along the column. In this work, we describe MagLIF experiments aimed at controlling these stagnation structures by varying the initial liner geometry and composition. First, by varying the initial aspect ratio of the liner, we demonstrate a change in the stagnation structures that is consistent with helical magneto Rayleigh–Taylor (MRT) instabilities feedthrough from the outer-to-inner surfaces of the liner. Second, to minimize the seed for such instabilities, we incorporate a dielectric coating on the outer surface of the beryllium liner, which has previously been shown to reduce the growth of the electrothermal instability, a likely seed for MRT growth. Using this coating, we achieve a stagnation column with significantly reduced helical structure and axial variation in x-ray brightness. We discuss how this coating changes the evolution of structures through stagnation along with the spatial uniformity of neutron production. Finally, we show that these more uniform stagnations also result in improved reproducibility in stagnation temperatures and primary DD neutron yield.

Ampleford, D. J. (ORCID:0000000237422421)↗
DOE OSTI2025

Assessing the performance of MagLIF with 3D MHD simulations

The Magnetized Liner Inertial Fusion (MagLIF) experimental platform at Sandia National Laboratories has realized a number of recent improvements in electrical current and laser preheat coupling but fusion yields are below expectations, based on modeling with clean (that is, simulations with no interfacial instabilities and no mix) two-dimensional (2D) magneto-hydrodynamics (MHD) simulations, by a factor of 5 or more. However, magnetized liner implosions are known to produce helical magneto-Rayleigh–Taylor (MRT) modes and complex stagnation structures that cannot be directly modeled in 2D. This paper presents the results of 3D HYDRA MHD simulations, including helical MRT, showing that degradation from these instabilities can readily reproduce experimental yields, but it is difficult to simultaneously match the yield along with inferred fuel temperature, pressure, and burn history (assessed with x-rays), which are larger in the experiments considered here. Additional analysis methods and future experiments are proposed to help address the discrepancies. The 3D simulations also show, without substantive improvements to stability, changing the applied Bz or preheat is unlikely to increase performance of MagLIF to the same degree as clean 2D simulations. Finally, the first 3D HYDRA simulations with the Hall term show the ab initio production of helical MRT and produce a clear change in stagnation morphology compared to pre-seeded simulations without Hall. In spite of the differences, the simulations still produce comparable fusion performance but with longer, lower power, neutron yield history.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2023

Structural insights into plasmalemma vesicle-associated protein (PLVAP): Implications for vascular endothelial diaphragms and fenestrae

In many organs, small openings across capillary endothelial cells (ECs) allow the diffusion of low–molecular weight compounds and small proteins between the blood and tissue spaces. These openings contain a diaphragm composed of radially arranged fibers, and current evidence suggests that a single-span type II transmembrane protein, plasmalemma vesicle-associated protein-1 (PLVAP), constitutes these fibers. Here, we present the three-dimensional crystal structure of an 89-amino acid segment of the PLVAP extracellular domain (ECD) and show that it adopts a parallel dimeric alpha-helical coiled-coil configuration with five interchain disulfide bonds. The structure was solved using single-wavelength anomalous diffraction from sulfur-containing residues (sulfur SAD) to generate phase information. Biochemical and circular dichroism (CD) experiments show that a second PLVAP ECD segment also has a parallel dimeric alpha-helical configuration—presumably a coiled coil—held together with interchain disulfide bonds. Overall, ~2/3 of the ~390 amino acids within the PLVAP ECD adopt a helical configuration, as determined by CD. We also determined the sequence and epitope of MECA-32, an anti-PLVAP antibody. Taken together, these data lend strong support to the model of capillary diaphragms formulated by Tse and Stan in which approximately ten PLVAP dimers are arranged within each 60- to 80-nm-diameter opening like the spokes of a bicycle wheel. Passage of molecules through the wedge-shaped pores is presumably determined both by the length of PLVAP—i.e., the long dimension of the pore—and by the chemical properties of amino acid side chains and N-linked glycans on the solvent-accessible faces of PLVAP.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Relaxed tarantula skeletal muscle has two ATP energy-saving mechanisms

Myosin molecules in the relaxed thick filaments of striated muscle have a helical arrangement in which the heads of each molecule interact with each other, forming the interacting-heads motif (IHM). In relaxed mammalian skeletal muscle, this helical ordering occurs only at temperatures >20°C and is disrupted when temperature is decreased. Recent x-ray diffraction studies of live tarantula skeletal muscle have suggested that the two myosin heads of the IHM (blocked heads [BHs] and free heads [FHs]) have very different roles and dynamics during contraction. Here, we explore temperature-induced changes in the BHs and FHs in relaxed tarantula skeletal muscle. We find a change with decreasing temperature that is similar to that in mammals, while increasing temperature induces a different behavior in the heads. At 22.5°C, the BHs and FHs containing ADP.Pi are fully helically organized, but they become progressively disordered as temperature is lowered or raised. Our interpretation suggests that at low temperature, while the BHs remain ordered the FHs become disordered due to transition of the heads to a straight conformation containing Mg.ATP. Above 27.5°C, the nucleotide remains as ADP.Pi, but while BHs remain ordered, half of the FHs become progressively disordered, released semipermanently at a midway distance to the thin filaments while the remaining FHs are docked as swaying heads. We propose a thermosensing mechanism for tarantula skeletal muscle to explain these changes. Our results suggest that tarantula skeletal muscle thick filaments, in addition to having a superrelaxation–based ATP energy-saving mechanism in the range of 8.5–40°C, also exhibit energy saving at lower temperatures (<22.5°C), similar to the proposed refractory state in mammals.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Stepped pressure equilibrium with relaxed flow and applications in reversed-field pinch plasmas

The multi-region relaxed magnetohydrodynamics (MRxMHD) has been successful in the construction of equilibria in three-dimensional (3D) configurations. In MRxMHD, the plasma is sliced into sub-volumes separated by ideal interfaces, each undergoing relaxation, allowing the formation of islands and chaos. The resulting equilibrium has a stepped pressure profile across sub-volumes. The stepped pressure equilibrium code (SPEC) was developed to calculate MRxMHD equilibria numerically. In this work, we have extended the SPEC code to compute MRxMHD equilibria with field-aligned flow and rotation, following the theoretical development to incorporate cross-helicity and angular momentum constraints. The code has been verified for convergence and compared to a Grad–Shafranov solver in 2D. We apply our new tool to study the flow profile change before and after the sawtooth crash of a reversed-field pinch discharge, in which data of the parallel flow is available. We find the promising result that under the constraints of cross-helicity and angular momentum, the parallel flow profile in post-crash SPEC equilibrium is flat in the plasma core and the amplitude of the flow matches experimental observations. Lastly, we provide an example equilibrium with a 3D helical field structure as the favored lower energy state. This will be the first 3D numerical equilibrium in which the flow effects are self-consistently calculated.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2022

Polarized photoelectrons from converging vector waves

Abstract This paper investigates the spin characteristics of photoelectrons when hydrogen-like ions are centro-symmetrically irradiated with converging vector waves—a non-paraxial form of structured light. For a photon with given total angular momentum and third component thereof, photoelectrons with both helicities are obtained—in contrast to the fixed helicities produced by left- or right-circularly polarized light. The angular distribution of photoelectrons is broadly tunable through the radiation mode numbers, and opposite helicities can be extracted in synchronism.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2022

3D ion gyro-orbit heat load predictions for NSTX-U

Abstract High power tokamaks operate with divertor heat loads capable of destroying the plasma facing components (PFCs). High fidelity heat load predictions are necessary to ascertain the PFC state for design and during operation. Typical heat flux calculations are 2D, time invariant, and assume that power flows directly along the magnetic field lines (the optical approximation). These assumptions neglect the complex 3D geometries employed to protect the PFCs, the time varying nature of the plasma and PFC thermal state, and the helical trajectories of ions with finite Larmor radii (the gyro-orbit approximation). An integrated software framework, the heat flux engineering analysis toolkit (HEAT), was developed to generate time varying optical heat loads applied to real engineering computer aided design (CAD) (Looby et al 2022 Fusion Sci. Technol. 78 10–27). Recently, an ion-gyro orbit module has been added to HEAT. This module calculates the helical trajectories of ions as they gyrate about the magnetic field lines using kinetic theory macro-particles to accelerate the calculation. First, the new gyro-orbit module will be presented. Next, a comparison to existing research is performed. Finally, an analysis of the gyro-orbit heat loads for NSTX-U is presented for diverted discharges using the engineering CAD models utilized for PFC fabrication. Including these gyro-orbit effects can enhance the PFC performance by ‘smearing’ out the magnetic shadows associated with the castellated fish-scaled geometry. Simultaneously, the helical trajectories can degrade performance when they load narrow regions on edges and corners with high heat fluxes. Analysis of the trade-offs between these competing effects is included, and regions for further investigation are identified.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2023

Study of Alfvén eigenmode stability in Quasi-Poloidal Stellarator (QPS) plasma using a Landau closure model

The aim of this study is to analyze the linear stability of Alfvén eigenmodes (AE) in the QPS device heated by a tangential neutral beam injector (NBI). The analysis is performed using the gyro-fluid code FAR3d, that solves the reduced MHD equations for the thermal plasma coupled with moments of the kinetic equation for the energetic particles (EP). The AE stability is calculated in several operational regimes of the tangential NBI: EP β between 0.001 and 0.1, EP energy between 12 and 180 keV and different radial locations of the beam. The analysis is performed for vacuum and finite β equilibria as well as QPS configurations with two and three periods. The EP β threshold in the vacuum case is 0.001 and the AE frequency is lower as the energy of the EP population decreases. Toroidal Alfvén eigenmodes with f = 80–120 kHz and elliptical AE between f = 120–350 kHz are triggered between the middle-outer plasma region ($r/a \gt 0.5$). The AE stability improves in the simulations with finite β equilibria and three period configurations with respect to the vacuum case with two periods because the continuum gaps are slender, leading to a higher threshold of the EP β, above 0.03 for the AEs triggered by the helical mode families. Helical effects are not strong enough to destabilize Helical Alfvén eigenmodes, the AEs with the largest growth rates are triggered by the n = 1 and n = 2 toroidal families.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2022

On large-scale dynamos with stable stratification and the application to stellar radiative zones

Our understanding of large-scale magnetic fields in stellar radiative zones remains fragmented and incomplete. Such magnetic fields, which must be produced by some form of dynamo mechanism, are thought to dominate angular-momentum transport, making them crucial to stellar evolution. A major difficulty is the effect of stable stratification, which generally suppresses dynamo action. We explore the effects of stable stratification on mean-field dynamo theory with a particular focus on a non-helical large-scale dynamo (LSD) mechanism known as the magnetic shear-current effect. We find that the mechanism is robust to increasing stable stratification as long as the original requirements for its operation are met: a source of shear and non-helical magnetic fluctuations (e.g. from a small-scale dynamo). Both are plausibly sourced in the presence of differential rotation. Our idealized direct numerical simulations, supported by mean-field theory, demonstrate the generation of near equipartition large-scale toroidal fields. Additionally, a scan over magnetic Reynolds number shows no change in the growth or saturation of the LSD, providing good numerical evidence of a dynamo mechanism resilient to catastrophic quenching, which has been an issue for helical dynamos. These properties – the absence of catastrophic quenching and robustness to stable stratification – make the mechanism a plausible candidate for generating in situ large-scale magnetic fields in stellar radiative zones.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Measurement of spin-density matrix elements in ρ ( 770 ) production with a linearly polarized photon beam at E γ = 8.2 – 8.8 GeV

The GlueX experiment at Jefferson Lab studies photoproduction of mesons using linearly polarized 8.5GeV photons impinging on a hydrogen target which is contained within a detector with near-complete coverage for charged and neutral particles. We present measurements of spin-density matrix elements for the photoproduction of the vector meson rho(770). The statistical precision achieved exceeds that of previous experiments for polarized photoproduction in this energy range by orders of magnitude. Here we confirm a high degree of s-channel helicity conservation at small squared four-momentum transfer t and are able to extract the t-dependence of natural and unnatural-parity exchange contributions to the production process in detail. We confirm the dominance of natural-parity exchange over the full t range. We also find that helicity amplitudes in which the helicity of the incident photon and the photoproduced rho(770) differ by two units are negligible for -t<0.5GeV 2 /c 2 .

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2021

Gluon distributions and their applications to Ioffe-time distributions

We investigate unpolarized and polarized gluon distributions and their applications to the Ioffe-time distributions, which are related to lattice QCD calculations of parton distribution functions. Guided by the counting rules based on the perturbative QCD at large momentum fraction x and the color coherence of gluon couplings at small x, we parametrize gluon distributions in the helicity basis. By fitting the unpolarized gluon distribution, the inferred polarized gluon distribution from our parametrization agrees with the one from global analysis. A simultaneous fit to both unpolarized and polarized gluon distributions is also performed to explore the model uncertainty. The agreement with the global analysis supports the (1 - x) power suppression of the helicity-antialigned distribution relative to the helicity-aligned distribution. The corresponding Ioffe-time distributions and their asymptotic expansions are calculated from the gluon distributions. Our results of the Ioffe-time distributions can provide guidance to the extrapolation of lattice QCD data to the region lacking precise gluonic matrix elements. Therefore, they can help regulate the ill-posed inverse problem associated with extracting the gluon distributions from discrete data from first-principle calculations, which are available in a limited range of the nucleon momentum and the spatial separation between the gluonic currents. Given various limitations in obtaining lattice QCD data at large Ioffe time, phenomenological approaches can provide important complementary information to extract the gluon distributions in the entire momentum fraction region, especially at small x. The possibility of investigating higher-twist effects and other systematic uncertainties in the contemporary first-principle calculations of parton distributions from phenomenologically well-determined Ioffe-time distributions in the large Ioffe-time region is also discussed.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗