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DOE OSTI2019

Improving efficiency of semi‐direct møller–plesset second‐order perturbation methods through oversubscription on multiple nodes

The purpose of this work is to evaluate the efficacy of oversubscription, at the 1 n , 2 n , and 3 n levels for n physical cores, on semi‐direct MP2 methods within NWChem when using two and three Intel nodes. Semi‐direct MP2 energy and gradient calculations were performed on chemical systems ranging from 824 to 1626 basis functions using the cc‐pVDZ basis set. Wall times for semi‐direct MP2 energies were reduced by as much as 36% using two nodes and 44% using three nodes compared to no oversubscription. Total energy consumed by the CPU and DRAM was also reduced by as much as 12% using two nodes and as much as 20% using three nodes when oversubscribing. MP2 gradient wall times improved by as much as 16% using two nodes and 18% using three nodes compared to execution at the 1 n level; however, energy savings were insignificant. Intel performance‐counter data show a strong correlation between total wall time saved and less time spent in the idle state, indicating a more efficient use of the processors when oversubscribing. © 2019 Wiley Periodicals, Inc.

Fought, Ellie L.↗

DOE OSTI2016

From plane waves to local Gaussians for the simulation of correlated periodic systems

Here, we present a simple, robust, and black-box approach to the implementation and use of local, periodic, atom-centered Gaussian basis functions within a plane wave code, in a computationally efficient manner. The procedure outlined is based on the representation of the Gaussians within a finite bandwidth by their underlying plane wave coefficients. The core region is handled within the projected augment wave framework, by pseudizing the Gaussian functions within a cutoff radius around each nucleus, smoothing the functions so that they are faithfully represented by a plane wave basis with only moderate kinetic energy cutoff. To mitigate the effects of the basis set superposition error and incompleteness at the mean-field level introduced by the Gaussian basis, we also propose a hybrid approach, whereby the complete occupied space is first converged within a large plane wave basis, and the Gaussian basis used to construct a complementary virtual space for the application of correlated methods. We demonstrate that these pseudized Gaussians yield compact and systematically improvable spaces with an accuracy comparable to their non-pseudized Gaussian counterparts. A key advantage of the described method is its ability to efficiently capture and describe electronic correlation effects of weakly bound and low-dimensional systems, where plane waves are not sufficiently compact or able to be truncated without unphysical artifacts. We investigate the accuracy of the pseudized Gaussians for the water dimer interaction, neon solid, and water adsorption on a LiH surface, at the level of second-order Møller–Plesset perturbation theory.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

NASA NTRS2002

Predicting motion sickness during parabolic flight

BACKGROUND: There are large individual differences in susceptibility to motion sickness. Attempts to predict who will become motion sick have had limited success. In the present study, we examined gender differences in resting levels of salivary amylase and total protein, cardiac interbeat intervals (R-R intervals), and a sympathovagal index and evaluated their potential to correctly classify individuals into two motion sickness severity groups. METHODS: Sixteen subjects (10 men and 6 women) flew four sets of 10 parabolas aboard NASA's KC-135 aircraft. Saliva samples for amylase and total protein were collected preflight on the day of the flight and motion sickness symptoms were recorded during each parabola. Cardiovascular parameters were collected in the supine position 1-5 days before the flight. RESULTS: There were no significant gender differences in sickness severity or any of the other variables mentioned above. Discriminant analysis using salivary amylase, R-R intervals and the sympathovagal index produced a significant Wilks' lambda coefficient of 0.36, p=0.006. The analysis correctly classified 87% of the subjects into the none-mild sickness or the moderate-severe sickness group. CONCLUSIONS: The linear combination of resting levels of salivary amylase, high-frequency R-R interval levels, and a sympathovagal index may be useful in predicting motion sickness severity.

manned↗

NASA NTRS2002

Predicting Motion Sickness During Parabolic Flight

Background: There are large individual differences in susceptibility to motion sickness. Attempts to predict who will become motion sick have had limited success. In the present study we examined gender differences in resting levels of salivary amylase and total protein, cardiac interbeat intervals (R-R intervals), and a sympathovagal index and evaluated their potential to correctly classify individuals into two motion sickness severity groups. Methods: Sixteen subjects (10 men and 6 women) flew 4 sets of 10 parabolas aboard NASA's KC-135 aircraft. Saliva samples for amylase and total protein were collected preflight on the day of the flight and motion sickness symptoms were recorded during each parabola. Cardiovascular parameters were collected in the supine position 1-5 days prior to the flight. Results: There were no significant gender differences in sickness severity or any of the other variables mentioned above. Discriminant analysis using salivary amylase, R-R intervals and the sympathovagal index produced a significant Wilks' lambda coefficient of 0.36, p= 0.006. The analysis correctly classified 87% of the subjects into the none-mild sickness or the moderate-severe sickness group. Conclusions: The linear combination of resting levels of salivary amylase, high frequency R-R interval levels, and a sympathovagal index may be useful in predicting motion sickness severity.

Harm, Deborah L.↗

DOE OSTI2018

A hybrid wavelet de-noising and Rank-Set Pair Analysis approach for forecasting hydro-meteorological time series

Highlights: • A new hybrid approach is proposed to improve forecasts of hydro-meteorological time series. • Rank-Set Pair Analysis combined with wavelet de-noising markedly improves forecasting accuracy. • The performance of the proposed approach proves best among its present competitors even when the extreme value occurs. Accurate, fast forecasting of hydro-meteorological time series is presently a major challenge in drought and flood mitigation. This paper proposes a hybrid approach, wavelet de-noising (WD) and Rank-Set Pair Analysis (RSPA), that takes full advantage of a combination of the two approaches to improve forecasts of hydro-meteorological time series. WD allows decomposition and reconstruction of a time series by the wavelet transform, and hence separation of the noise from the original series. RSPA, a more reliable and efficient version of Set Pair Analysis, is integrated with WD to form the hybrid WD-RSPA approach. Two types of hydro-meteorological data sets with different characteristics and different levels of human influences at some representative stations are used to illustrate the WD-RSPA approach. The approach is also compared to three other generic methods: the conventional Auto Regressive Integrated Moving Average (ARIMA) method, Artificial Neural Networks (ANNs) (BP-error Back Propagation, MLP-Multilayer Perceptron and RBF-Radial Basis Function), and RSPA alone. Nine error metrics are used to evaluate the model performance. Compared to three other generic methods, the results generated by WD-REPA model presented invariably smaller error measures which means the forecasting capability of the WD-REPA model is better than other models. The results show that WD-RSPA is accurate, feasible, and effective. In particular, WD-RSPA is found to be the best among the various generic methods compared in this paper, even when the extreme events are included within a time series.

58 GEOSCIENCES↗

DOE OSTI2025

Engineering Polyketide Stereocenters with Ketoreductase Domain Exchanges

Polyketide synthases (PKSs) are versatile biosynthetic megasynthases capable of producing a diverse range of natural products with many applications, including in pharmaceuticals. The stereochemical precision of PKSs makes them a powerful tool for engineering tailored, unnatural polyketides; however, modifying the stereocenters of a PKS product while maintaining production levels remains a significant challenge. In this study, we systematically tested and evaluated strategies for ketoreductase (KR) domain exchanges, the domain responsible for setting stereocenters of polyketide products. After first optimizing the method for KR exchanges, we then performed 44 KR domain exchanges on three different PKSs to obtain high production of all four stereoisomers in vivo. By testing both one- and two-module PKS systems, we investigated how downstream modules process intermediates with altered stereochemistry and found that the configuration of the α-substituents was critical for gatekeeping by the ketosynthase (KS). To overcome this constraint, we investigated two different strategies for altering the KS domain, including introducing targeted mutations in the downstream KS, and exploring boundaries in exchanging the entire functional unit from the donor PKS. Both strategies successfully modified the KS stereocontrol with distinct trade-offs; the functional unit exchange resulted in higher titer improvements, though it was more likely to break the entire PKS. This study demonstrates a comprehensive approach to successfully engineering all four stereochemical configurations in multiple PKS systems, advancing our understanding of and ability to rationally modify polyketide stereochemistry through multiple engineering strategies.

Keiser, Leah S. [Joint BioEnergy Institute (JBEI),↗

DOE OSTI2023

Fringing Analysis and Simulation for the Vera C. Rubin Observatory’s Legacy Survey of Space and Time

Abstract The presence of fringing in astronomical Charge-Coupled Device (CCD) images will have an impact on photometric quality and measurements. Yet its impact on the Vera C. Rubin Observatory’s Legacy Survey of Space and Time (LSST) has not been fully studied. We present a detailed study on fringing for CCDs already implemented on the Rubin Observatory LSST Camera’s focal plane. After making physical measurements and knowing the compositions, we developed a model for the e2v CCDs. We present a method to fit for the internal height variation of the epoxy layer within the sensors based on fringing measurements in a laboratory setting. This method is generic enough that it can be easily modified to work for other CCDs. Using the derived fringing model, we successfully reproduce comparable fringing amplitudes that match the observed levels in images taken by existing telescopes with different optical designs. This model is then used to forecast the expected level of fringing in a single LSST y -band sky background exposure with Rubin telescope optics in the presence of a realistic time-varying sky spectrum. The predicted fringing amplitude in LSST images ranges from 0.04% to 0.2% depending on the location of a CCD on the focal plane. We find that the predicted variation in surface brightness caused by fringing in LSST y -band sky background images is about 0.6 μ Jy arcsec − 2 , which is 40 times larger than the current measurement error. We conclude that it is necessary to include fringing correction in the Rubin’s LSST image processing pipeline.

Astronomy & Astrophysics↗

DOE OSTI2017

Recent advances in stellarator optimization

Computational optimization has revolutionized the field of stellarator design. To date, optimizations have focused primarily on optimization of neoclassical confinement and ideal MHD stability, although limited optimization of other parameters has also been performed. Here, we outline a select set of new concepts for stellarator optimization that, when taken as a group, present a significant step forward in the stellarator concept. One of the criticisms that has been leveled at existing methods of design is the complexity of the resultant field coils. Recently, a new coil optimization code—COILOPT++, which uses a spline instead of a Fourier representation of the coils,—was written and included in the STELLOPT suite of codes. The advantage of this method is that it allows the addition of real space constraints on the locations of the coils. The code has been tested by generating coil designs for optimized quasi-axisymmetric stellarator plasma configurations of different aspect ratios. As an initial exercise, a constraint that the windings be vertical was placed on large major radius half of the non-planar coils. Further constraints were also imposed that guaranteed that sector blanket modules could be removed from between the coils, enabling a sector maintenance scheme. Results of this exercise will be presented. New ideas on methods for the optimization of turbulent transport have garnered much attention since these methods have led to design concepts that are calculated to have reduced turbulent heat loss. We have explored possibilities for generating an experimental database to test whether the reduction in transport that is predicted is consistent with experimental observations. Thus, a series of equilibria that can be made in the now latent QUASAR experiment have been identified that will test the predicted transport scalings. Fast particle confinement studies aimed at developing a generalized optimization algorithm are also discussed. A new algorithm developed for the design of the scraper element on W7-X is presented along with ideas for automating the optimization approach.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2016

Toward an optimal online checkpoint solution under a two-level HPC checkpoint model

The traditional single-level checkpointing method suffers from significant overhead on large-scale platforms. Hence, multilevel checkpointing protocols have been studied extensively in recent years. The multilevel checkpoint approach allows different levels of checkpoints to be set (each with different checkpoint overheads and recovery abilities), in order to further improve the fault tolerance performance of extreme-scale HPC applications. How to optimize the checkpoint intervals for each level, however, is an extremely difficult problem. In this paper, we construct an easy-to-use two-level checkpoint model. Checkpoint level 1 deals with errors with low checkpoint/recovery overheads such as transient memory errors, while checkpoint level 2 deals with hardware crashes such as node failures. Compared with previous optimization work, our new optimal checkpoint solution offers two improvements: (1) it is an online solution without requiring knowledge of the job length in advance, and (2) it shows that periodic patterns are optimal and determines the best pattern. We evaluate the proposed solution and compare it with the most up-to-date related approaches on an extreme-scale simulation testbed constructed based on a real HPC application execution. Simulation results show that our proposed solution outperforms other optimized solutions and can improve the performance significantly in some cases. Specifically, with the new solution the wall-clock time can be reduced by up to 25.3% over that of other state-of-the-art approaches. Lastly, a brute-force comparison with all possible patterns shows that our solution is always within 1% of the best pattern in the experiments.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2024

The AGORA High-resolution Galaxy Simulations Comparison Project. VI. Similarities and Differences in the Circumgalactic Medium

Abstract We analyze the circumgalactic medium (CGM) for eight commonly-used cosmological codes in the AGORA collaboration. The codes are calibrated to use identical initial conditions, cosmology, heating and cooling, and star formation thresholds, but each evolves with its own unique code architecture and stellar feedback implementation. Here, we analyze the results of these simulations in terms of the structure, composition, and phase dynamics of the CGM. We show properties such as metal distribution, ionization levels, and kinematics are effective tracers of the effects of the different code feedback and implementation methods, and as such they can be highly divergent between simulations. This is merely a fiducial set of models, against which we will in the future compare multiple feedback recipes for each code. Nevertheless, we find that the large parameter space these simulations establish can help disentangle the different variables that affect observable quantities in the CGM, e.g., showing that abundances for ions with higher ionization energy are more strongly determined by the simulation’s metallicity, while abundances for ions with lower ionization energy are more strongly determined by the gas density and temperature.

79 ASTRONOMY AND ASTROPHYSICS↗

NASA NTRS1983

Computation of Jupiter interior models from gravitational inversion theory

Spacecraft measurements of Jupiter have provided the mass, standard pressure level radius, rotation law, internal mass distribution multipole moments, and internal composition and temperature distribution constraints, for the present implementation of a method for deriving planetary interior models that exactly satisfy a set of N gravitational constraints by means of appropriate iteration. The models are not forced to fit the more indirectly derived constraints, which are instead used as conistency checks. In the case of an He mass fraction in the envelope Y of 0.2, the inferred pressure at a mass density of about 0.2 g/cu cm is about a factor of 2 higher than would be indicated by experimental H compression data in the relevant pressure range of 100,000 to one million bar. The inferred pressure distribution is in better agreement with the shock data for a nominal Y value of 0.3 + or - 0.05.

Hubbard, W. B.↗

NASA NTRS1990

Extensions of algebraic image operators: An approach to model-based vision

Researchers extend their previous research on a highly structured and compact algebraic representation of grey-level images which can be viewed as fuzzy sets. Addition and multiplication are defined for the set of all grey-level images, which can then be described as polynomials of two variables. Utilizing this new algebraic structure, researchers devised an innovative, efficient edge detection scheme. An accurate method for deriving gradient component information from this edge detector is presented. Based upon this new edge detection system researchers developed a robust method for linear feature extraction by combining the techniques of a Hough transform and a line follower. The major advantage of this feature extractor is its general, object-independent nature. Target attributes, such as line segment lengths, intersections, angles of intersection, and endpoints are derived by the feature extraction algorithm and employed during model matching. The algebraic operators are global operations which are easily reconfigured to operate on any size or shape region. This provides a natural platform from which to pursue dynamic scene analysis. A method for optimizing the linear feature extractor which capitalizes on the spatially reconfiguration nature of the edge detector/gradient component operator is discussed.

Lerner, Bao-Ting↗

NASA NTRS1991

Implementation of a partitioned algorithm for simulation of large CSI problems

The implementation of a partitioned numerical algorithm for determining the dynamic response of coupled structure/controller/estimator finite-dimensional systems is reviewed. The partitioned approach leads to a set of coupled first and second-order linear differential equations which are numerically integrated with extrapolation and implicit step methods. The present software implementation, ACSIS, utilizes parallel processing techniques at various levels to optimize performance on a shared-memory concurrent/vector processing system. A general procedure for the design of controller and filter gains is also implemented, which utilizes the vibration characteristics of the structure to be solved. Also presented are: example problems; a user's guide to the software; the procedures and algorithm scripts; a stability analysis for the algorithm; and the source code for the parallel implementation.

Alvin, Kenneth F.↗

NASA NTRSDate not supplied

Quiet High Speed Fan II (22-inch) Duct Mode Characteristics as Measured by the Rotating Rake Mode Measurement System while Operated in the NASA Glenn 9x15 Low Speed Wind Tunnel

Wind Tunnel test at a tunnel Mach number of 0.10. This was an entry to investigate the effect of “stator clocking” on noise. The fan consisted of a moderately aft swept rotor and an aft swept set of stator vanes. The fan stage consisted of 22 rotor blades, 50 stator vanes, and 10 downstream support struts. A set of stator vanes designed for lower noise was tested as well as a baseline stator vane set. The stator assembly could be rotated several degrees to adjust the clocking angle between the stator vane pack and the strut assembly. All configurations were with a hard wall duct (no acoustic treatment). The NASA Glenn Research Center’s Rotating Rake Mode Measurement System was utilized to obtain a complete map of the acoustic duct modes present in the ducted fan. The system is a radial rake emersed into the duct that continuously rotates about the duct centerline. For the two stator configurations, data were acquired at several different fan speeds which included nominal, approach, cutback, and takeoff conditions. Analysis of the mode power level results at the fan fundamentals showed the improved designed set resulted in lower rotor-stator and rotor-strut interaction acoustic levels for the interaction modes. Varying the angle between the stators and struts was shown to be a viable method to achieve a minimum in rotor-strut interaction mode power level. Multiple-pure-tones generated by the Quiet High Speed Fan II in the inlet were also measured.

Turbofan, Duct Modes↗

NASA NTRSDate not supplied

Quiet High Speed Fan II (22-inch) Duct Mode Characteristics as Measured by the Rotating Rake Mode Measurement System while Operated in the NASA Glenn 9x15 Low Speed Wind Tunnel

Wind Tunnel at a tunnel Mach number of 0.10. This was an entry to investigate the effect of “stator clocking” on noise. The fan consisted of a moderately aft swept rotor and an aft swept set of stator vanes. The fan stage consisted of 22 rotor blades, 50 stator vanes, and 10 downstream support struts. A set of stator vanes designed for lower noise was tested as well as a baseline stator vane set. The stator assembly could be rotated several degrees to adjust the clocking angle between the stator vane pack and the strut assembly. All configurations were with a hard wall duct (no acoustic treatment). The NASA Glenn Research Center’s Rotating Rake Mode Measurement System was utilized to obtain a complete map of the acoustic duct modes present in the ducted fan. The system is a radial rake emersed into the duct that continuously rotates about the duct centerline. For the two stator configurations, data were acquired at several different fan speeds which included nominal, approach, cutback, and takeoff conditions. Analysis of the mode power level results at the fan fundamentals showed the improved designed set resulted in lower rotor-stator and rotor-strut interaction acoustic levels for the interaction modes. Varying the angle between the stators and struts was shown to be a viable method to achieve a minimum in rotor-strut interaction mode power level. Multiple-pure-tones generated by the Quiet High Speed Fan II in the inlet were also measured.

Turbofan, Duct Modes↗

NASA NTRSDate not supplied

Source Diagnostic Fan II (22-Inch) Duct Mode Characteristics as Measured by the Rotating Rake Mode Measurement System while Operated in the NASA Glenn 9x15 Low Speed Wind Tunnel

A 22-inch scale model of the Honeywell Quiet High Speed Fan II was tested in the NASA Glenn 9- by 15-foot Low Speed Wind Tunnel at a tunnel Mach number of 0.10. This was an entry to investigate the effect of “stator clocking” on noise. The fan consisted of a moderately aft swept rotor, and an aft swept set of stator vanes. The fan stage consisted of 22 rotor blades, 50 stator vanes, and 10 downstream support struts. A set of stator vanes designed for lower noise was tested as well as a baseline stator vane set. The stator assembly could be rotated several degrees to adjust the clocking angle between the stator vane pack and the strut assembly. All configurations were with a hard wall duct (no acoustic treatment). The NASA Glenn Research Center’s Rotating Rake Mode Measurement System was utilized to obtain a complete map of the acoustic duct modes present in the ducted fan. The system is a radial rake emersed into the duct that continuously rotates about the duct centerline. For the two stator configurations, data were acquired at several different fan speeds which included nominal, approach, cutback, and takeoff conditions. Analysis of the mode power level results at the fan fundamentals showed the improved designed set resulted in lower rotor-stator and rotor-strut interaction acoustic levels for the interaction modes. Varying the angle between the stators and struts was shown to be a viable method to achieve a minimum in rotor-strut interaction mode power level. Multiple-pure-tones generated by the Quiet High Speed Fan II in the inlet were also measured.

Fan Noise↗

DOE OSTI2013

Enhancing the actinide sciences in Europe through hot laboratories networking and pooling: from ACTINET to TALISMAN

Since 2004, Europe supports the strengthening of the European actinides sciences scientific community through the funding of dedicated networks: (i) from 2004 to 2008, the ACTINET6 network of excellence (6. Framework Programme) gathered major laboratories involved in nuclear research and a wide range of academic research organisations and universities with the specific aims of funding and implementing joint research projects to be performed within the network of pooled facilities; (ii) from 2009 to 2013, the ACTINET-I3 integrated infrastructure initiative (I3) supports the cost of access of any academics in the pooled EU hot laboratories. In this continuation, TALISMAN (Trans-national Access to Large Infrastructures for a Safe Management of Actinides) gathers now the main European hot laboratories in actinides sciences in order to promote their opening to academics and universities and strengthen the EU-skills in actinides sciences. Furthermore, a specific focus is set on the development of advanced cutting-edge experimental and spectroscopic capabilities, the combination of state-of-the art experimental with theoretical first-principle methods on a quantum mechanical level and to benefit from the synergy between the different scientific and technical communities. ACTINET-I3 and TALISMAN attach a great importance and promote the Education and Training of the young generation of actinides scientists in the Trans-national access but also by organizing Schools (general Summer Schools or Theoretical User Lab Schools) or by granting students to attend International Conference on actinide sciences. (authors)

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

DOE OSTI2021

Lagrangian–Eulerian multidensity topology optimization with the material point method

Abstract In this paper, a hybrid Lagrangian–Eulerian topology optimization (LETO) method is proposed to solve the elastic force equilibrium with the Material Point Method (MPM). LETO transfers density information from freely movable Lagrangian carrier particles to a fixed set of Eulerian quadrature points. This transfer is based on a smooth radial kernel involved in the compliance objective to avoid the artificial checkerboard pattern. The quadrature points act as MPM particles embedded in a lower‐resolution grid and enable a subcell multidensity resolution of intricate structures with a reduced computational cost. A quadrature‐level connectivity graph‐based method is adopted to avoid the artificial checkerboard issues commonly existing in multiresolution topology optimization methods. Numerical experiments are provided to demonstrate the efficacy of the proposed approach.

Li, Yue↗