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At least 73 records · Page 4

Bayesian analysis for estimating statistical parameter distributions of elasto-viscoplastic material models

High temperature design methods rely on constitutive models for inelastic deformation and failure typically calibrated against the mean of experimental data without considering the associated scatter. Variability may arise from the experimental data acquisition process, from heat-to-heat material property variations, or both and need to be accurately captured to predict parameter bounds leading to efficient component design. Applying the Bayesian Markov Chain Monte Carlo (MCMC) method to produce statistical models capturing the underlying uncertainty in the experimental data is an area of ongoing research interest. This work varies aspects of the Bayesian MCMC method and explores their effect on the posterior parameter distributions for a uniaxial elasto-viscoplastic damage model using synthetically generated reference data. From our analysis with the uniaxial inelastic model we determine that an informed prior distribution including different types of test conditions results in more accurate posterior parameter distributions. The parameter posterior distributions, however, do not improve when increasing the number of similar experimental data. Additionally, changing the amount of scatter in the data affects the quality of the posterior distributions, especially for the less sensitive model parameters. Moreover, we perform a sensitivity study of the model parameters against the likelihood function prior to the Bayesian analysis. The results of the sensitivity analysis help to determine the reliability of the posterior distributions and reduce the dimensionality of the problem by fixing the insensitive parameters. The comprehensive study described in this work demonstrates how to efficiently apply the Bayesian MCMC methodology to capture parameter uncertainties in high temperature inelastic material models. Quantifying these uncertainties in inelastic models will improve high temperature engineering design practices and lead to safer, more effective component designs.

42 ENGINEERING↗

Collaborative Project: The problem of bias in defining uncertainty in computationally enabled strategies for data-driven climate model development

The objective of the project is to develop strategies for better representing scientific sensibilities within statistical measures of model skill that then can be used within a Bayesian statistical framework for data-driven climate model development and improved measures of model scientific uncertainty. One of the thorny issues in model evaluation is quantifying the effect of biases on climate projections. While any bias is not desirable, only those biases that affect feedbacks affect scatter in climate projections. The effort at the University of Texas is to analyze previously calculated ensembles of CAM3.1 with perturbed parameters to discover how biases affect projections of global warming. The hypothesis is that compensating errors in the control model can be identified by their effect on a combination of processes and that developing metrics that are sensitive to dependencies among state variables would provide a way to select version of climate models that may reduce scatter in climate projections. Gabriel Huerta was responsible for leading the effort to develop statistical methods for evaluating these field dependencies. The UT effort will incorporate these developments into MECS, which is a set of python scripts being developed at the University of Texas for managing the workflow associated with data-driven climate model development over HPC resources. We regularly consult with Peter Gleckler (LLNL), Mark Taylor (SNL), and Rich Neale (NCAR) to provide additional insight into issues concerning CAM5 model development and multi-model evaluation of the AR5 archive. This grant was originally assigned to Indiana University where both the PI (Huerta) and the Postdoc (Nosedal) worked on the project from March 1, 2012-March 31, 2013.

97 MATHEMATICS AND COMPUTING↗

Collaborative Project: The problem of bias in defining uncertainty in computationally enabled strategies for data-driven climate model development. Final Technical Report.

The objective of the project is to develop strategies for better representing scientific sensibilities within statistical measures of model skill that then can be used within a Bayesian statistical framework for data-driven climate model development and improved measures of model scientific uncertainty. One of the thorny issues in model evaluation is quantifying the effect of biases on climate projections. While any bias is not desirable, only those biases that affect feedbacks affect scatter in climate projections. The effort at the University of Texas is to analyze previously calculated ensembles of CAM3.1 with perturbed parameters to discover how biases affect projections of global warming. The hypothesis is that compensating errors in the control model can be identified by their effect on a combination of processes and that developing metrics that are sensitive to dependencies among state variables would provide a way to select version of climate models that may reduce scatter in climate projections. Gabriel Huerta at the University of New Mexico is responsible for developing statistical methods for evaluating these field dependencies. The UT effort will incorporate these developments into MECS, which is a set of python scripts being developed at the University of Texas for managing the workflow associated with data-driven climate model development over HPC resources. This report reflects the main activities at the University of New Mexico where the PI (Huerta) and the Postdocs (Nosedal, Hattab and Karki) worked on the project.

58 GEOSCIENCES↗

Bayesian Model Averaging for Ensemble-Based Estimates of Solvation Free Energies

This paper applies the Bayesian Model Averaging (BMA) statistical ensemble technique to estimate small molecule solvation free energies. There is a wide range methods for predicting solvation free energies, ranging from empirical statistical models to {\it ab initio} quantum mechanical approaches. Each of these methods are based on a set of conceptual assumptions that can affect a method's predictive accuracy and transferability. Using an iterative statistical process, we have selected and combined solvation energy estimates using an ensemble of 17 diverse methods from the SAMPL4 blind prediction study to form a single, aggregated solvation energy estimate. The ensemble design process evaluates the statistical information in each individual method as well as the performance of the aggregate estimate obtained from the ensemble as a whole. Methods that possess minimal or redundant information are pruned from the ensemble and the evaluation process repeats until aggregate predictive performance can no longer be improved. We show that this process results in a final aggregate estimate that outperforms all individual methods by reducing estimate errors by as much as 91% to 1.2 kcal/mol accuracy. We also compare our iterative refinement approach to other statistical ensemble approaches and demonstrate that this iterative process reduces estimate errors by as much as 61%. This work provides a new approach for accurate solvation free energy prediction and lays the foundation for future work on aggregate models that can balance computational cost with predictive accuracy.

solvation, Bayesian model averaging, Electrostatic↗

General Diffuse-Interface Theories and an Approach to Predictive Tumor Growth Modeling

While a large and growing literature exists on mathematical and computational models of tumor growth, to date tumor growth models are largely qualitative in nature, and fall far short of being able to provide predictive results important in life-and-death decisions. This is largely due to the enormous complexity of evolving biological and chemical processes in living tissue and the complex interactions of many cellular and vascular constituents in living organisms. Several new technologies have emerged, however, which could lead to significant progress in this important area: (i) the development of so-called phase-field, or diffuse-interface models, which can be developed using continuum mixture theory, and which provide a general framework for modeling the action of multiple interacting constituents. These are based on generalizations of the Cahn–Hilliard models for spinodal decomposition, and have been used recently in certain tumor growth theories; (ii) the emergence of predictive computational methods based on the use of statistical methods for calibration, model validation, and uncertainty quantification; (iii) advances in imaging, experimental cell biology, and other medical observational methodologies; and (iv) the advent of petascale computing that makes possible the resolution of features at scales and at speeds that were unattainable only a short time in the past. Here we develop a general phenomenological thermomechanical theory of mixtures that employs phase-field or diffuse interface models of surface energies and reactions and which provides a framework for generalizing existing theories of the types that are in use in tumor growth modeling. In principle, the framework provides for the effects of M solid constituents, which may undergo large deformations, and for the effect of N - M fluid constituents, which could include highly nonlinear, non-Newtonian fluids. We then describe several special cases which have the potential of providing acceptable models of tumor growth. We then describe the beginning steps of the development of Bayesian methods for statistical calibration, model validation, and uncertainty quantification, which, with further work, could produce a truly predictive tool for studying tumor growth. In particular, we outline the processes of statistical calibration and validation that can be employed to determine if tumor growth models, drawn from the broad class of models developed here, are valid for prediction of key quantities of interest critical to making decisions on various medical protocols. We also describe how uncertainties in such key quantities of interest can be quantified in ways that can be used to establish confidence in predicted outcomes.

59 BASIC BIOLOGICAL SCIENCES↗

Measurement of charge state distributions using a scintillation screen

Absolute cross sections measured using electromagnetic devices to separate and detect heavy recoiling ions need to be corrected for charge state fractions. Accurate prediction of charge state distributions using theoretical models is not always a possibility, especially in energy and mass regions where data is sparse. As such, it is often necessary to measure charge state fractions directly. In this paper we present a novel method of using a scintillation screen along with a CMOS camera to image the charge dispersed beam after a set of magnetic dipoles. A measurement of the charge state distribution for 88 Sr passing through a natural carbon foil is performed. Using a Bayesian model to extract statistically meaningful uncertainties from these images, we find agreement between the new method and a more traditional method using Faraday cups. Additional future work is need to better understand systematic uncertainties. Our technique offers a viable method to measure charge state distributions.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Trust Your Gut: Comparing Human and Machine Inference from Noisy Visualizations

People commonly utilize visualizations not only to examine a given dataset, but also to draw generalizable conclusions about the underlying models or phenomena. Prior research has compared human visual inference to that of an optimal Bayesian agent, with deviations from rational analysis viewed as problematic. However, human reliance on non-normative heuristics may prove advantageous in certain circumstances. We investigate scenarios where human intuition might surpass idealized statistical rationality. In two experiments, we examine individuals’ accuracy in characterizing the parameters of known data-generating models from bivariate visualizations. Our findings indicate that, although participants generally exhibited lower accuracy compared to statistical models, they frequently outperformed Bayesian agents, particularly when faced with extreme samples. Participants appeared to rely on their internal models to filter out noisy visualizations, thus improving their resilience against spurious data. However, participants displayed overconfidence and struggled with uncertainty estimation. They also exhibited higher variance than statistical machines. Our findings suggest that analyst gut reactions to visualizations may provide an advantage, even when departing from rationality. These results carry implications for designing visual analytics tools, offering new perspectives on how to integrate statistical models and analyst intuition for improved inference and decision-making. The data and materials for this paper are available at https://osf.io/qmfv6

human-machine collaboration↗

Robust Statistical Approach for Determination of Graphite Nitridation Using Bayesian Model Comparison

A better estimation of surface reaction efficiency of semiconductor-grade graphite with atomic nitrogen, as well as the calibration error are calculated using Bayesian updating based on experimental data. Compared with a conventional deterministic model, the stochastic model approach is a powerful tool in the sense that the model is capable of taking into account underlying error correlations among the data quantities. In this paper, we investigate four different stochastic models (called “stochastic system model classes” herein) corresponding to different descriptions of modeling and measurement error structures, given one deterministic physical model. These stochastic system model classes differ in the covariance matrix structure that is used in the uncertainty model to represent uncertainties associated with the physical model and experimental measurements. For each model class, Bayesian inference is used to estimate the posterior probabilities of the physical model parameters as well as of the stochastic model parameters. Model comparison and selection are then applied based on two measures including Bayesian evidence and Bayesian information criterion, as well as the deviance information criterion. Both measures suggest the stochastic model class, which considers that a correlation between errors in two data quantities among different data points is the most plausible. With the stochastic model class, the range of uncertainty in surface reaction efficiency is estimated to be about two orders of magnitude at [Formula: see text].

Engineering↗

EFBMC

SAND2026-23986O EFBMC performs elastic Bayesian model calibration by applying Bayesian statistics and functional analysis. The software provides Python, R, and MATLAB scripts that enable users to calibrate models. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Tucker, J. Derek [Sandia National Lab. (SNL-CA), L↗

BayeSED: A GENERAL APPROACH TO FITTING THE SPECTRAL ENERGY DISTRIBUTION OF GALAXIES

We present a newly developed version of BayeSED, a general Bayesian approach to the spectral energy distribution (SED) fitting of galaxies. The new BayeSED code has been systematically tested on a mock sample of galaxies. The comparison between the estimated and input values of the parameters shows that BayeSED can recover the physical parameters of galaxies reasonably well. We then applied BayeSED to interpret the SEDs of a large K{sub s} -selected sample of galaxies in the COSMOS/UltraVISTA field with stellar population synthesis models. Using the new BayeSED code, a Bayesian model comparison of stellar population synthesis models has been performed for the first time. We found that the 2003 model by Bruzual and Charlot, statistically speaking, has greater Bayesian evidence than the 2005 model by Maraston for the K{sub s} -selected sample. In addition, while setting the stellar metallicity as a free parameter obviously increases the Bayesian evidence of both models, varying the initial mass function has a notable effect only on the Maraston model. Meanwhile, the physical parameters estimated with BayeSED are found to be generally consistent with those obtained using the popular grid-based FAST code, while the former parameters exhibit more natural distributions. Based on the estimated physical parameters of the galaxies in the sample, we qualitatively classified the galaxies in the sample into five populations that may represent galaxies at different evolution stages or in different environments. We conclude that BayeSED could be a reliable and powerful tool for investigating the formation and evolution of galaxies from the rich multi-wavelength observations currently available. A binary version of the BayeSED code parallelized with Message Passing Interface is publicly available at https://bitbucket.org/hanyk/bayesed.

79 ASTRONOMY AND ASTROPHYSICS↗

Bayesian calibration of strength parameters using hydrocode simulations of symmetric impact shock experiments of Al-5083

We report that predictive modeling of materials requires accurately parameterized constitutive models. Parameterizing models that describe dynamic strength and plasticity require experimentally probing materials in a variety of strain rate regimes. Some experimental protocols (e.g., plate impact) probe the constitutive response of a material using indirect measures such as free surface velocimetry. Manual efforts to parameterize constitutive models using indirect experimental measures often lead to non-unique optimizations without quantification of parameter uncertainty. This study uses a Bayesian statistical approach to find model parameters and to quantify the uncertainty of the resulting parameters. The technique is demonstrated by parameterizing the Johnson-Cook strength model for aluminum alloy 5083 by coupling hydrocode simulations and velocimetry measurements of a series of plate impact experiments. Simulation inputs and outputs are used to calibrate an emulator that mimics the outputs of the computationally intensive simulations. Varying the amount of experimental data available for emulator calibration showed clear differences in the degree of uncertainty and uniqueness of the resulting optimized Johnson-Cook parameters for Al-5083. The results of the optimization provided a numerical evaluation of the degree of confidence in model parameters and model performance. Lastly, given an understanding of the physical effects of certain model parameters, individual parameter uncertainty can be leveraged to quickly identify gaps in the physical domains covered by completed experiments.

36 MATERIALS SCIENCE↗

Spatially Dependent Multiple Testing Under Model Misspecification, With Application to Detection of Anthropogenic Influence on Extreme Climate Events

The Weather Risk Attribution Forecast (WRAF) is a forecasting tool that uses output from global climate models to make simultaneous attribution statements about whether and how greenhouse gas emissions have contributed to extreme weather across the globe. However, in conducting a large number of simultaneous hypothesis tests, the WRAF is prone to identifying false “discoveries.” A common technique for addressing this multiple testing problem is to adjust the procedure in a way that controls the proportion of true null hypotheses that are incorrectly rejected, or the false discovery rate (FDR). Unfortunately, generic FDR procedures suffer from low power when the hypotheses are dependent, and techniques designed to account for dependence are sensitive to misspecification of the underlying statistical model. In this paper, we develop a Bayesian decision-theoretical approach for dependent multiple testing and a nonparametric hierarchical statistical model that flexibly controls false discovery and is robust to model misspecification. We illustrate the robustness of our procedure to model error with a simulation study, using a framework that accounts for generic spatial dependence and allows the practitioner to flexibly specify the decision criteria. Finally, we apply our procedure to several seasonal forecasts and discuss implementation for the WRAF workflow. Lastly, supplementary materials for this article, including a standardized description of the materials available for reproducing the work, are available as an online supplement.

54 ENVIRONMENTAL SCIENCES↗

A comparison of material flow strength models using Bayesian cross-validation

Predicting material flow strength over a range of conditions, such as temperature and strain rate, is necessary for many engineering applications. In this paper, we consider how to compare the predictiveness of several different strength models using a statistical technique called Bayesian cross-validation. Given a dataset of flow strength measurements obtained from mechanictesting experiments, the procedure consists of performing a Bayesian calibration of each strength model on a subset of the data and evaluating how well the trained models predict the remaining data. The predictiveness of a calibrated strength model is quantifiable probabilistically, which provides an interpretable metric for comparing the different models. As an illustrative example, we compare the Johnson-Cook (JC), Zerilli-Armstrong (ZA), Preston-Tonks-Wallace (PTW), and Mechanical Threshold Stress (MTS) flow strength models for the tantalum stress-strain curve data from Chen and Gray (1996). We show that prediction intervals for the four strength models cover the held-out data at most experimental conditions, but also that prediction interval coverage and prediction uncertainty varies by model and experimental condition. Finally, the analysis further allows us to identify experimental regimes for which one of the strength models predicts better than the other three.

36 MATERIALS SCIENCE↗

A Bayesian approach to modeling diffraction profiles and application to ferroelectric materials

A new statistical approach for modeling diffraction profiles is introduced, using Bayesian inference and a Markov chain Monte Carlo (MCMC) algorithm. This method is demonstrated by modeling the degenerate reflections during application of an electric field to two different ferroelectric materials: thin-film lead zirconate titanate (PZT) of composition PbZr 0.3 Ti 0.7 O 3 and a bulk commercial PZT polycrystalline ferroelectric. Here, the new method offers a unique uncertainty quantification of the model parameters that can be readily propagated into new calculated parameters.

36 MATERIALS SCIENCE↗

Sequential Bayesian Parameter Estimation of Stochastic Dynamic Load Models

In this paper we focus on the parameter estimation of dynamic load models with stochastic terms-in particular, load models where protection settings are uncertain, such as in aggregated air conditioning units. We show how the uncertainty in the aggregated protection characteristics can be formulated as a stochastic differential equation with process noise. We cast the parameter inversion within a Bayesian parameter estimation framework, and we present methods to include process noise. We demonstrate the benefits of considering stochasticity in the parameter estimation and the risks of ignoring it.

Bayesian Statistics↗

Uncertainty quantification and propagation in nuclear density functional theory

Nuclear density functional theory (DFT) is one of the main theoretical tools used to study the properties of heavy and superheavy elements, or to describe the structure of nuclei far from stability. While on-going eff orts seek to better root nuclear DFT in the theory of nuclear forces, energy functionals remain semi-phenomenological constructions that depend on a set of parameters adjusted to experimental data in fi nite nuclei. In this study, we review recent eff orts to quantify the related uncertainties, and propagate them to model predictions. In particular, we cover the topics of parameter estimation for inverse problems, statistical analysis of model uncertainties and Bayesian inference methods. Illustrative examples are taken from the literature.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗