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DOE OSTI2024

Glacial to periglacial transition at the end of the last ice age in the subtropical semiarid Andes

Atmospheric warming and circulation reorganization at the end of the last ice age represent the most important climate change of the last 100,000 years and provide an opportunity to uncover how the southern subtropics cryosphere responded to strong changes in the global climate system. Extensive mapping and chronologic records on cryogenic landforms to better understand the association and interactions between glaciers and viscous creep of ice-rich permafrost landforms (rock glaciers) are widely missing in the region. In this paper, we reconstruct the geomorphic imprint of the Last Glacial Maximum (LGM) and the Termination I in the high Andes of the Río Limarí Basin (30–31°S) in the subtropical semiarid Andes of Chile. 74 new 10 Be surface exposure dating ages constrain the timing of glaciation, deglaciation, and glacial to periglacial transition. Glacial advances occurred first by 41.2 ± 0.6 – 35.0 ± 0.5 ka during Marine Isotope Stage 3, but probably earlier also; then, a second advance occurred during the global LGM between 24.2 ± 0.4 and 18.6 ± 0.2 ka. Deglaciation by 17.6 ± 0.2 ka left extensive hummocky moraines on the main valleys. Characteristic patterns of furrows and ridges typical of rock glaciers and solifluction superimposed on the LGM hummocky moraine indicate ice-rich permafrost in glacial deposits likely between 15.5 ± 0.3 and 13.6 ± 0.3 ka. We propose that moraines deposited by LGM debris-covered glaciers served as a niche for strong seasonal frost and permafrost creep, which substantially modified the original landforms. Finally, our results contribute to a better understanding of major transformations in an ice-rich high mountain area of the southern hemisphere where the interplay of temperature and precipitation changes drove glacial to periglacial transitions.

10Be surface exposure dating↗

DOE OSTI2021

Characterization of mechanical discontinuities based on data-driven classification of compressional-wave travel times

Wave propagation and diffusive transport phenomena are influenced by the mechanical discontinuities in material. Here this study shows that certain bulk properties of the network of low-velocity mechanical discontinuities (e.g. air-filled cracks) in a material can be characterized by processing compressional-wave travel times using traditional data-driven classification techniques. To that end, we perform three tasks in chronological order: (1) use the discrete fracture network (DFN) method to create two-dimensional (2D) numerical models of crack-bearing material embedded with various types of low-velocity mechanical discontinuities, (2) use the fast marching method (FMM) to simulate the propagation of the wave/diffusion front from a single source through the 2D crack-bearing material to multiple receivers placed on the boundary of the material, and (3) train 9 data-driven classifiers to characterize the crack-bearing materials (i.e. bulk properties of the network of mechanical discontinuities in the crack-bearing material) by learning from the simulations of travel times detected by multiple receivers placed around the crack-bearing material. The classifiers identified the orientation, spatial distribution, and dispersion of the low-velocity mechanical discontinuities. Voting classifier performs the best among the 9 classifiers. For the characterization of bulk dispersion and distribution of discontinuities, the sensors located on the adjacent boundaries are more important; whereas for the characterization of bulk orientation of discontinuities, the sensors located on the opposite side are more important.

42 ENGINEERING↗

DOE OSTI2026

Deployment Pathways for Long Duration Energy Storage

We apply a least-cost generation expansion model of the continental United States to assess how optimal investments in long-duration energy storage (LDES) technologies are impacted by changes in system generation portfolios and technology costs, assessing 369 capacity expansion scenarios in total. The expansion model considers 8,760 h of chronological operations for the entire target year, 2040. We find that low-cost LDES technologies can reduce generation investments and system costs. Specifically, once the costs for 24- and 100-h storage reach $38/kWh and $14/kWh, respectively, substantial deployments are observed. The distribution of storage investments across durations is strongly influenced by the system generation portfolio. We also demonstrate that a high-fidelity temporal representation is required to capture the value of LDES in generation expansion. Finally, we conduct a regression analysis of our capacity expansion results and find that LDES deployments are positively correlated with the combined wind and solar capacity share and negatively correlated with peaking and baseload shares.

Levin, Todd↗

DOE OSTI2022

Highly efficient and simple SSPER and rrPCR approaches for the accurate site-directed mutagenesis of large and small plasmids

Advances are needed in the site-directed mutagenesis of large plasmids for protein structure-function studies, as current methods are often inefficient, complicated and time-consuming. Here two new methods are reported that overcome these difficulties, namely the single primer extension reaction (SSPER) strategy that reaches 100% efficiency and the reduce recycle PCR (rrPCR) method that is advantageous in generating single and pairwise combinations of mutations. Both methods are distinguished from current technologies by the addition of a step that easily removes the oligonucleotide primer(s) after the first reaction, thus allowing for the addition of a second reaction in chronological sequence to generate and isolate the appropriate DNA product with the site-directed mutation(s). High efficiency of the methods is demonstrated by generating single and paired combinations of the 11 site-directed mutations targeted on 5 different plasmid DNA templates ranging from 10 to 12 kb and 57–60% GC-content at a rate of 50–100%. Overall, the methods are demonstrated to be (i) highly accurate, allowing for screening of plasmids by DNA sequencing, (ii) streamlined to generate the mutations within a single day, (iii) cost-effective in requiring only two primers and two enzymes (DpnI and a proofreading DNA polymerase), (iv) straightforward in primer design, (v) applicable for both large and small plasmids, and (vi) easily implemented by entry level researchers.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2022

Review and status of tool tip frequency response function prediction using receptance coupling

This paper provides a chronological review of publications that implement and advance the receptance coupling substructure analysis (RCSA) approach first applied to tool tip receptance (or frequency response function) prediction for milling applications in 2000. The review topics mimic the RCSA approach, where the tool, holder, and spindle-machine receptances are coupled analytically, and include: tool-holder receptance modeling; connection modeling; spindle-machine receptances; and applications. The review paper summarizes contributions from multiple, international authors (198 papers) to these topics. Additionally, it provides a comprehensive resource for those beginning an investigation into RCSA.

42 ENGINEERING↗

DOE OSTI2022

Cosmogenic 10Be constraints on deglacial snowline rise in the Southern Alps, New Zealand

We report geochronological dating of glacial landforms, such as terminal and lateral moraines, is useful for determining the extent and timing of past glaciation and for reconstructing the magnitude and rate of past climate changes. In the Southern Alps of New Zealand, well-dated glacial geomorphological records constrain the last glacial cycle across much of the Waitaki River basin (e.g. Ōhau, Pukaki, Tekapo) but its southern sector such as the Ahuriri River valley remains comparatively unconstrained. Recently, there has been debate on the scale and rapidity of mountain glacier retreat during the last glacial termination, particularly the 20–17 ka period in New Zealand. Missing from this debate is well-constrained equilibrium-line altitude (ELA) and associated temperature reconstructions, particularly over the period around 17 ka, which can help us to develop a more complete picture of how past temperature changes drove glacier retreat. Here we report the first glacial chronology dataset from the Last Glacial Maximum (LGM) and subsequent deglaciation from the Ahuriri River valley, Southern Alps, New Zealand (44°23'54"S, 169°39'48"E) based on 38 beryllium-10 ( 10 Be) surface-exposure ages from terminal moraine systems and glaciated bedrock situated at the lower and middle sections of the valley. Our results show that the former Ahuriri Glacier reached its maximum extent at 19.8 ± 0.3 ka, which coincides with the global Last Glacial Maximum. By 16.7 ± 0.3 ka, the glacier had retreat ~18 km up-valley suggesting at least ~43% glacier-length loss relative to its full LGM extent. This deglaciation was accompanied by the formation of a shallow proglacial lake. Using the accumulation area ratio (AAR) method, we estimate that the ELA was lower than present by ~880 m (~1120 m a.s.l.) at 19.8 ± 0.3 ka, and ~770 m lower (~1230 m a.s.l.) at 16.7 ± 0.3 ka. Applying an estimate for temperature lapse rate, this ELA anomaly implies that local air temperature was 5 ± 1 °C colder than present (1981–2010) at 19.8 ± 0.3 ka, while it was 4.4 ± 0.9 °C colder at 16.7 ± 0.3 ka, assuming no change in precipitation. The substantial glacier retreat in response to a relatively small accompanying increases in ELA (110 m) and temperature (0.6 °C) may have been a result of the high glacier-length sensitivity of this glacier system due to its low gradient of former ice surface. Our low warming estimate differs markedly from other deglaciation studies, specifically from Rakaia River valley, which reports a much larger temperature increase at the onset of the last deglaciation. This precisely-dated moraine record along with reconstructed ELA as proxies for atmospheric conditions, provides new insight into post LGM glacier behaviour and climate conditions in New Zealand.

58 GEOSCIENCES↗

DOE OSTI2025

Paleoclimatic implications of glacial fluctuations in the Sierra Nevada del Cocuy, northern Andes, Colombia, during the Lateglacial and Holocene

The reconstruction of former mountain glaciers from geomorphic mapping and cosmogenic-nuclide surface-exposure dating provides a unique opportunity to infer patterns of past terrestrial climate variability. Tropical mountain glaciers are particularly valuable as there are comparatively few terrestrial climate proxies at equatorial latitudes relative to higher latitudes. As the single largest climate zone on Earth, the tropics play an outsized role in mediating global climate via the ocean-atmosphere transfer of latent heat and water vapor. Nonetheless, there remains a persistent gap in our understanding of how the tropics influenced – or were influenced by – the high-magnitude climate shifts of the Late Pleistocene, and whether this high-energy region simply responded to extratropical forcing or was itself a driver of global climatic change. To help address this knowledge gap, we analyzed geologic evidence for past glacial fluctuations in three adjacent valleys in the Sierra Nevada del Cocuy, the highest subrange of the Eastern Cordillera in the Colombian Andes, to provide a terrestrial record of atmospheric temperature during the latter part of Termination 1. Coupled with geomorphic mapping and paleo-snowline reconstructions, our beryllium-10 glacial chronology indicates that glaciers in the humid inner tropics underwent pronounced growth and gradual decay during the Antarctic Cold Reversal (14.5–12.8 ka) and Younger Dryas (12.8–11.7 ka) periods, respectively, following a trend that, according to directly dated moraine records from throughout both polar hemispheres, appears to have been global. While the specific mechanism(s) behind this large-scale behavior remains to be corroborated, we revisit the hypothesis that ocean-atmosphere heat transfer and water vapor flux are key drivers of abrupt Lateglacial temperature fluctuations. Subsequent to the Lateglacial, deglaciation of the Sierra Nevada del Cocuy accelerated during the Early Holocene, a pattern also observed in other tropical glacier records. More recently, the magnitude of snowline rise and glacier retreat over the last two centuries supports the view that modern tropospheric warming is anomalously strong at least relative to the last ∼16,000 years.

Andes↗

DOE OSTI2020

Hydrogen-Bonded Organic Frameworks: A Rising Class of Porous Molecular Materials

Hydrogen-bonded organic frameworks (HOFs) are a class of porous molecular materials that rely on the assembly of organic building blocks by means of hydrogen-bonding interactions to form two-dimensional (2D) and three-dimensional (3D) crystalline networks. The reversible nature of the hydrogen-bond formation endows HOFs with the attributes of solution processability and simple regeneration. High-quality single crystals of HOFs can be grown easily for unambiguous superstructure determination by single-crystal X-ray diffraction, which is crucial for the elucidation of superstructure–property relationships. During the past decade, considerable progress has been achieved in realizing stable HOFs with permanent porosities by focusing on the design of molecular building blocks in order to introduce rigidity, auxiliary [π···π] interactions, and interpenetration of their frameworks to sustain the extended networks. The applications of HOFs are far-reaching, spanning catalysis, energy, and biomedical products as well as the storage and separation of fine chemicals. In this paper, we, first of all, provide an overview of the chronological development of HOFs, starting from the seminal work by Marsh and Duchamp in 1969 on the crystal superstructure of the hydrogen-bonded networks of trimesic acid. We identify the development of novel hydrogen-bonding motifs such as diaminotriazine (DTA), the introduction of the concept of molecular tectonics, and the establishment of permanent porosity in HOFs as being some of the milestones, which incentivized the current burgeoning research endeavors on developing HOFs as multifunctional materials. This Account is focused primarily on surveying the strategies for constructing porous 3D HOFs based on organic building blocks with peripheral carboxyl groups. These strategies are presented in the following categories: (1) the polycatenation of 2D networks by trigonal building blocks to form global 3D frameworks, (2) the utilization of building blocks with 3D geometries—tetrahedral and trigonal prismatic—that are predisposed to form 3D networks, and (3) the docking by shape-fitting of geometrically labile building blocks. We emphasize how the molecular geometry of the building blocks plays an important role in modulating the superstructures of extended frameworks so as to address specific applications. Recognizing that the in silico design of HOFs is the ultimate goal of researchers in this field, we also discuss the recent advances in superstructure prediction that lead to the formation of porous supramolecular crystals and assess the complications in implementing computational methods for HOFs with complex superstructures. We hope this Account will inspire the development of new supramolecular designs and creative approaches to crystal engineering that aid and abet the assembly of multifunctional HOFs with customizable properties.

36 MATERIALS SCIENCE↗

DOE OSTI2021

Can We Better Constrain the Timing of GNAIW/UNADW Variability in the Western Equatorial Atlantic and Its Relationship to Climate Change During the Last Deglaciation?

We have revisited the well-trod VM28-122 core retrieved from the deep Colombian Basin, which includes sediments that reflect modern Upper North Atlantic Deep Water and extends through the last deglaciation into the last glacial period when the site was bathed in Glacial North Atlantic Intermediate Water. Here, we leverage the nearby Cariaco Basin's surface water radiocarbon reconstruction (reservoir age, and ΔR) on the IntCal20 timescale to recast the period of the last deglaciation with a newly constrained age model. Based on the revised age model, we observe that the multimillennial decrease in benthic δ 13 C and B/Ca (which record δ 13 C of dissolved inorganic carbon and Δ[CO 3 –2 ], respectively) began at 18,100 ± 240 (95% CI) calibrated years BP, synchronous with Termination 1, as identified by changes in the Antarctic Ice Sheet composite and by the onset of rapid glacier recession in the Southern Hemisphere (Denton et al., 2010, https://doi.org/10.1126/science.1184119; Denton et al., 2021, https://10.1016/j.quascirev.2020.106771). The beginning of the decrease in benthic δ 18 O is concurrent with the changes in carbon chemistry or at most, a few hundred years later. It is no later than 17,700 ± 300 (95% CI) yrs BP in our record, at the putative start of Heinrich Stadial 1. With sufficient data density (more than 2–3 control points per kyr) and an independent record of past surface water radiocarbon variations, it is possible to achieve late glacial and deglacial chronologies with fidelities similar to those of ice cores. Furthermore, doing so in more oceanographic locations should shed light more broadly on the mechanisms instrumental to abrupt climate change.

58 GEOSCIENCES↗

DOE OSTI2023

The Impact of Inherited Morphology on Sandbar Migration During Mild Wave Seasons

Sandbars are ubiquitous morphologic features found in the nearshore environment throughout the world, yet predictive capabilities of their evolution remain limited. In order to provide new insights on the relevant processes controlling sandbar morphodynamics, this study uses a 41-year record of 637 monthly cross-shore profiles from Duck, North Carolina, USA, to derive complex empirical orthogonal functions representative of the two dominant modes of sandbar migrations: offshore and onshore propagation. Interference of these two modes produces commonly observed sandbar states. While mild wave energies are traditionally assumed to drive onshore sandbar migration, the offshore mode is repeatedly seen to dominate sandbar migration in mild wave seasons following anomalously high late-winter wave energy and when the inherited morphology is composed of a single bar or terrace, as opposed to a more common two-bar state. A data-derived conceptual model is presented synthesizing the effect of antecedent morphology and wave climate chronology on interannual trends in net offshore sandbar migration.

58 GEOSCIENCES↗

DOE OSTI2025

Revealing the Moon's Taurus‐Littrow Landslide via Integrated Analysis of Pristine Apollo 17 Soil Core 73001/2

The “light mantle” deposit at the base of South Massif in the Moon's Taurus‐Littrow Valley was a primary science target for the Apollo 17 exploration. The possibility that it was a landslide triggered by ejecta from Tycho Crater is critical for establishing the age of Tycho and constraining recent lunar impact chronology; however, the mechanism of emplacement of the deposit has recently been questioned. The newly opened 73001/73002 double drive tube from Station 3 sampled 70.6 cm deep into the regolith and represents the first stratigraphic section of an extraterrestrial landslide deposit returned to Earth. Here we provide an overview of the stratigraphy of the 73001/73002 core based on top to bottom variations revealed by coordinated laboratory analyses and explore constraints on the emplacement of the light mantle deposit. Briefly, the upper ∼10 cm of 73002 contains a disturbed zone from space weathering and emplacement of ejecta from a nearby crater that excavated and ejected basaltic material. Below 10 cm is a nearly uniform unit of immature regolith. These data support a single event for the emplacement of the deposit at this location, followed by weathering and mixing of materials from nearby crater ejecta in the upper 10 cm. Slight variations in chemistry and clast components may reflect the relative stratigraphy of the South Massif slope, with material toward the bottom of 73001 originating from lower slopes and material from higher up in the core representing regolith from higher up the South Massif slopes.

58 GEOSCIENCES↗

DOE OSTI2025

Timing based clustering of childhood BMI trajectories reveals differential maturational patterns; Study in the Northern Finland Birth Cohorts 1966 and 1986

Children’s biological age does not always correspond to their chronological age. In the case of BMI trajectories, this can appear as phase variation, which can be seen as shift, stretch, or shrinking between trajectories. With maturation thought of as a process moving towards the final state - adult BMI, we assessed whether children can be divided into latent groups reflecting similar maturational age of BMI. The groups were characterised by early factors and time-related features of the trajectories. We used data from two general population birth cohort studies, Northern Finland Birth Cohorts 1966 and 1986 (NFBC1966 and NFBC1986). Height (n = 6329) and weight (n = 6568) measurements were interpolated in 34 shared time points using B-splines, and BMI values were calculated between 3 months to 16 years. Pairwise phase distances of 2999 females and 3163 males were used as a similarity measure in k-medoids clustering. We identified three clusters of trajectories in females and males (Type 1: females, n = 1566, males, n = 1669; Type 2: females, n = 1028, males, n = 973; Type 3: females, n = 405, males, n = 521). Similar distinct timing patterns were identified in males and females. The clusters did not differ by sex, or early growth determinants studied. Trajectory cluster Type 1 reflected to the shape of what is typically illustrated as the childhood BMI trajectory in literature. However, the other two have not been identified previously. Type 2 pattern was more common in the NFBC1966 suggesting a generational shift in BMI maturational patterns.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2022

Brain ageing in schizophrenia: evidence from 26 international cohorts via the ENIGMA Schizophrenia consortium

Schizophrenia (SZ) is associated with an increased risk of life-long cognitive impairments, age-related chronic disease, and premature mortality. We investigated evidence for advanced brain ageing in adult SZ patients, and whether this was associated with clinical characteristics in a prospective meta-analytic study conducted by the ENIGMA Schizophrenia Working Group. The study included data from 26 cohorts worldwide, with a total of 2803 SZ patients (mean age 34.2 years; range 18–72 years; 67% male) and 2598 healthy controls (mean age 33.8 years, range 18–73 years, 55% male). Brain-predicted age was individually estimated using a model trained on independent data based on 68 measures of cortical thickness and surface area, 7 subcortical volumes, lateral ventricular volumes and total intracranial volume, all derived from T1-weighted brain magnetic resonance imaging (MRI) scans. Deviations from a healthy brain ageing trajectory were assessed by the difference between brain-predicted age and chronological age (brain-predicted age difference [brain-PAD]). On average, SZ patients showed a higher brain-PAD of +3.55 years (95% CI: 2.91, 4.19; I 2 = 57.53%) compared to controls, after adjusting for age, sex and site (Cohen’s d = 0.48). Among SZ patients, brain-PAD was not associated with specific clinical characteristics (age of onset, duration of illness, symptom severity, or antipsychotic use and dose). This large-scale collaborative study suggests advanced structural brain ageing in SZ. Longitudinal studies of SZ and a range of mental and somatic health outcomes will help to further evaluate the clinical implications of increased brain-PAD and its ability to be influenced by interventions.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2023

Gray matter volume drives the brain age gap in schizophrenia: a SHAP study

Neuroimaging-based brain age is a biomarker that is generated by machine learning (ML) predictions. The brain age gap (BAG) is typically defined as the difference between the predicted brain age and chronological age. Studies have consistently reported a positive BAG in individuals with schizophrenia (SCZ). However, there is little understanding of which specific factors drive the ML-based brain age predictions, leading to limited biological interpretations of the BAG. We gathered data from three publicly available databases - COBRE, MCIC, and UCLA - and an additional dataset (TOPSY) of early-stage schizophrenia (82.5% untreated first-episode sample) and calculated brain age with pre-trained gradient-boosted trees. Then, we applied SHapley Additive Explanations (SHAP) to identify which brain features influence brain age predictions. We investigated the interaction between the SHAP score for each feature and group as a function of the BAG. These analyses identified total gray matter volume (group × SHAP interaction term β = 1.71 [0.53; 3.23]; p corr < 0.03) as the feature that influences the BAG observed in SCZ among the brain features that are most predictive of brain age. Other brain features also presented differences in SHAP values between SCZ and HC, but they were not significantly associated with the BAG. We compared the findings with a non-psychotic depression dataset (CAN-BIND), where the interaction was not significant. This study has important implications for the understanding of brain age prediction models and the BAG in SCZ and, potentially, in other psychiatric disorders.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2022

Arctic Ocean annual high in ${{\boldsymbol{p}}}_{{{\bf{CO}}}_{{\bf{2}}}}$ could shift from winter to summer

Long-term stress on marine organisms from ocean acidification will differ between seasons. As atmospheric carbon dioxide (CO 2 ) increases, so do seasonal variations of ocean CO 2 partial pressure (p co 2 ), causing summer and winter long-term trends to diverge. Trends may be further influenced by an unexplored factor—changes in the seasonal timing of p co 2 . In Arctic Ocean surface waters, the observed timing is typified by a winter high and summer low because biological effects dominate thermal effects. Here we show that 27 Earth system models simulate similar timing under historical forcing but generally project that the summer low, relative to the annual mean, eventually becomes a high across much of the Arctic Ocean under mid-to-high-level CO 2 emissions scenarios. Often the greater increase in summer p co 2 , although gradual, abruptly inverses the chronological order of the annual high and low, a phenomenon not previously seen in climate-related variables. The main cause is the large summer sea surface warming from earlier retreat of seasonal sea ice. Warming and changes in other drivers enhance this century’s increase in extreme summer p co 2 by 29 ± 9 per cent compared with no change in driver seasonalities. Thus the timing change worsens summer ocean acidification, which in turn may lower the tolerance of endemic marine organisms to increasing summer temperatures.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Correlating the Morphological Changes to Electrochemical Performance During Carbon Corrosion in Polymer Electrolyte Fuel Cells

A mechanistic understanding of carbon corrosion in polymer electrolyte fuel cells (PEFCs) is required to design durable catalyst layers. Uncontrolled startup and shutdown of PEFCs cause electrochemical oxidation of carbon, which leads to several degradation phenomena, such as loss in electrochemical surface area (ECSA), pore structure collapse or increase in mass transport resistance. In this study, the chronology of morphological changes in the cathode catalyst layer due to carbon corrosion was identified and correlated with electrochemical performance degradation. PEFCs were subjected to the Department of Energy carbon corrosion accelerated stress test (AST) protocol. The study revealed two phases: in the initial phase (~500 AST cycles), amorphous carbon in contact with Pt nanoparticles oxidized fast. Rapid carbon loss and catalyst layer thinning occurred, but pore structure did not change significantly. Pt nanoparticles detached from the support and ECSA decreased drastically. In the second phase (~1500 AST cycles), carbon corrosion slowed down, but severe pore structure collapse was observed. Porosity and pore connectivity within the cathode catalyst layer decreased considerably. Electrochemical diagnostics corroborated this finding by showing significantly higher O2 mass transport resistance. Lastly, no significant change was observed in the concentration of oxides on the carbon surface after AST. But overall water management in the cathode catalyst layer deteriorated as the pore structure collapsed. This study provides an in-depth understanding of morphological changes during PEFC carbon corrosion AST protocol and motivates novel material design strategies to enable durable PEFCs.

catalyst layers↗

DOE OSTI2025

Free-energy orbital-free density functional theory: recent developments, perspective, and outlook

By summarizing the constraint-based development of orbital-free free-energy density functional approximations, we provide a perspective on progress over the last 15 years, the limitations of existing functionals, and the challenges awaiting resolution. We outline the chronology of the development of noninteracting and exchange-correlation free-energy orbital-free functionals and summarize the theoretical basis of existing local density approximation, second-order approximation, generalized gradient approximation (GGA), and meta-GGAs. We discuss limitations and challenges such as problems with thermodynamic derivatives, free-energy nonadditivity and the closely related issue of all-electron versus valence-only local pseudo-potential performance.

74 ATOMIC AND MOLECULAR PHYSICS↗

DOE OSTI2022

Disentangling Alzheimer’s disease neurodegeneration from typical brain ageing using machine learning

Abstract Neuroimaging biomarkers that distinguish between changes due to typical brain ageing and Alzheimer’s disease are valuable for determining how much each contributes to cognitive decline. Supervised machine learning models can derive multivariate patterns of brain change related to the two processes, including the Spatial Patterns of Atrophy for Recognition of Alzheimer’s Disease (SPARE-AD) and of Brain Aging (SPARE-BA) scores investigated herein. However, the substantial overlap between brain regions affected in the two processes confounds measuring them independently. We present a methodology, and associated results, towards disentangling the two. T1-weighted MRI scans of 4054 participants (48–95 years) with Alzheimer’s disease, mild cognitive impairment (MCI), or cognitively normal (CN) diagnoses from the Imaging-based coordinate SysTem for AGIng and NeurodeGenerative diseases (iSTAGING) consortium were analysed. Multiple sets of SPARE scores were investigated, in order to probe imaging signatures of certain clinically or molecularly defined sub-cohorts. First, a subset of clinical Alzheimer’s disease patients (n = 718) and age- and sex-matched CN adults (n = 718) were selected based purely on clinical diagnoses to train SPARE-BA1 (regression of age using CN individuals) and SPARE-AD1 (classification of CN versus Alzheimer’s disease) models. Second, analogous groups were selected based on clinical and molecular markers to train SPARE-BA2 and SPARE-AD2 models: amyloid-positive Alzheimer’s disease continuum group (n = 718; consisting of amyloid-positive Alzheimer’s disease, amyloid-positive MCI, amyloid- and tau-positive CN individuals) and amyloid-negative CN group (n = 718). Finally, the combined group of the Alzheimer’s disease continuum and amyloid-negative CN individuals was used to train SPARE-BA3 model, with the intention to estimate brain age regardless of Alzheimer’s disease-related brain changes. The disentangled SPARE models, SPARE-AD2 and SPARE-BA3, derived brain patterns that were more specific to the two types of brain changes. The correlation between the SPARE-BA Gap (SPARE-BA minus chronological age) and SPARE-AD was significantly reduced after the decoupling (r = 0.56–0.06). The correlation of disentangled SPARE-AD was non-inferior to amyloid- and tau-related measurements and to the number of APOE ε4 alleles but was lower to Alzheimer’s disease-related psychometric test scores, suggesting the contribution of advanced brain ageing to the latter. The disentangled SPARE-BA was consistently less correlated with Alzheimer’s disease-related clinical, molecular and genetic variables. By employing conservative molecular diagnoses and introducing Alzheimer’s disease continuum cases to the SPARE-BA model training, we achieved more dissociable neuroanatomical biomarkers of typical brain ageing and Alzheimer’s disease.

Hwang, Gyujoon↗