Excitation Energy Transfer in the Peridinin-Chlorophyll a-Protein Complex Modeled using Configuration Interaction
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Purpose: Excessive complexity in intensity-modulated radiation therapy (IMRT) plans increases the dose uncertainty, prolongs the treatment time, and increases the susceptibility to changes in patient or target geometry. To date, the tools for quantitative assessment of IMRT beam complexity are still lacking. In this study, The authors have sought to develop metrics to characterize different aspects of beam complexity and investigate the beam complexity for IMRT plans of different disease sites. Methods: The authors evaluated the beam complexity scores for 65 step-and-shoot IMRT plans from three sites (prostate, head and neck, and spine) and 26 volumetric-modulated arc therapy (VMAT) plans for the prostate. On the basis of the beam apertures and monitor unit weights of all segments, the authors calculated the mean aperture area, extent of aperture shape irregularity, and degree of beam modulation for each beam. Then the beam complexity values were averaged to obtain the complexity metrics of the IMRT plans. The authors studied the correlation between the beam complexity metrics and the quality assurance (QA) results. Finally, the effects of treatment planning parameters on beam complexity were studied. Results: The beam complexity scores were not uniform among the prostate IMRT beams from different gantry angles. The lateral beams had larger monitor units and smaller shape irregularity, while the anterior-posterior beams had larger modulation values. On average, the prostate IMRT plans had the smallest aperture irregularity, beam modulation, and normalized monitor units; the head and neck IMRT plans had large beam irregularity and beam modulation; and the spine stereotactic radiation therapy plans often had small beam apertures, which may have been associated with the relatively large discrepancies between planned and QA measured doses. There were weak correlations between the beam complexity scores and the measured dose errors. The prostate VMAT beams showed greater complexity than the prostate step-and-shoot IMRT beams. In the treatment planning process, the beam complexity increased as the minimum segment area decreased and as the number of optimization iterations and the maximum number of segments increased. Conclusions: The proposed metrics were effective in characterizing the beam complexity of different disease sites and for different treatment modalities. Efforts should be made to reduce the unnecessary complexity of IMRT beams to minimize the radiation dose uncertainties.
The infrared spectrum of the bis-uranyl nitrate complex [(UO{sub 2}){sub 2}(NO{sub 3}){sub 5}]{sup -} was measured in the gas phase using multiple photon dissociation (IRMPD). Intense absorptions corresponding to the nitrate symmetric and asymmetric vibrations, and the uranyl asymmetric vibration were observed. The nitrate nu3 vibrations indicate the presence of nitrate in a bridging configuration bound to both uranyl cations, and probably two distinct pendant nitrates in the complex. The coordination environment of the nitrate ligands and the uranyl cations were compared to those in the mono-uranyl complex. Overall, the uranyl cation is more loosely coordinated in the bis-uranyl complex [(UO{sub 2}){sub 2}(NO{sub 3}){sub 5}]{sup -} compared to the mono-complex [UO{sub 2}(NO{sub 3}){sub 3}]{sup -}, as indicated by a higher O-U-O asymmetric stretching (nu3) frequency. However, the pendant nitrate ligands are more strongly bound in the bis-complex than they are in the mono-uranyl complex, as indicated by the {nu}{sub 3} frequencies of the pendant nitrate, which are split into nitrosyl and O-N-O vibrations as a result of bidentate coordination. These phenomena are consistent with lower electron density donation per uranyl by the nitrate bridging two uranyl centers compared to that of a pendant nitrate in the mono-uranyl complex. The structure was calculated using density functional theory (B3LYP functional), which produced a structure in which the two uranyl molecules bridged by a single nitrate coordinated in a bis-bidentate fashion. Each uranyl molecule was coordinated by two pendant nitrate ligands. The corresponding vibrational spectrum was in excellent agreement with the IRMPD measurement, confirming the structural assignment.
Here, the novel metal chelator – N -2-pyridylmethyl-diethylenetriamine- N,N',N'',N'' -tetraacetic acid, DTTA-PyM – was designed to replace a single O-donor acetate group of the well-known aminopolycarboxylate complexant diethylenetriamine- N,N,N',N'',N'' -pentaacetic acid (DTPA) with an N-donor 2-pyridylmethyl. Potentiometric, spectroscopic, computational, and radioisotope distribution methods show distinct differences for the 4f and 5f coordination environments and enhanced actinide binding due to the nitrogen bearing heterocyclic moiety. The Am 3+ , Cm 3+ , Ln 3+ complexation studies for DTTA-PyM reveal an enhanced preference, relative to DTPA, for trivalent actinide binding. Fluorescence studies indicate no changes to the octadentate coordination of trivalent curium, while evidence of heptadentate complexation of trivalent europium is found in mixtures containing EuHL (aq) complexes at the same aqueous acidity. The denticity change observed for Eu 3+ suggests that complex protonation occurs on the pyridyl nitrogen. Formation of the CmHL(aq) complex is likely due to the protonation of an available carboxylate group since the carbonyl oxygen can maintain octadentate coordination through a rotation. The observed suppressed protonation of the pyridyl nitrogen in the Cm complexes may be attributed to stronger trivalent actinide binding by DTTA-PyM. Density functional theory calculations indicate that added stabilization of the actinide complexes with DTTA-PyM may originate from p back-bonding interactions between singly occupied 5 f orbitals of Am 3+ and the pyridyl nitrogen. The differences between the stability of trivalent actinide chelates (Am 3+ , Cm 3+ ) and trivalent lanthanide chelates (La 3+ -Lu 3+ ) are observed in liquid-liquid extraction systems, yielding unprecedented 4 f /5 f differentiation when using DTTA-PyM as an aqueous holdback reagent. In addition, the enhanced N -donor softness of the new DTTA-PyM chelator was perturbed by adding a fluorine onto the pyridine group. The comparative characterization of N -(3-fluoro-2-pyridylmethyl)-diethylenetriamine- N,N',N'',N'' -tetraacetic acid, DTTA-3-F-PyM, showed subdued 4 f /5 f differentiation due to the presence of this electron-withdrawing group.
We have studied the (quinoline-CO{sub 2}){sup −} anionic complex by a combination of mass spectrometry, anion photoelectron spectroscopy, and density functional theory calculations. The (quinoline-CO{sub 2}){sup −} anionic complex has much in common with previously studied (N-heterocycle-CO{sub 2}){sup −} anionic complexes both in terms of geometric structure and covalent bonding character. Unlike the previously studied N-heterocycles, however, quinoline has a positive electron affinity, and this provided a pathway for determining the binding energy of CO{sub 2} in the (quinoline-CO{sub 2}){sup −} anionic complex. From the theoretical calculations, we found CO{sub 2} to be bound within the (quinoline-CO{sub 2}){sup −} anionic complex by 0.6 eV. We also showed that the excess electron is delocalized over the entire molecular framework. It is likely that the CO{sub 2} binding energies and excess electron delocalization profiles of the previously studied (N-heterocycle-CO{sub 2}){sup −} anionic complexes are quite similar to that of the (quinoline-CO{sub 2}){sup −} anionic complex. This class of complexes may have a role to play in CO{sub 2} activation and/or sequestration.
A series of rhodium (III) bis(quinolinyl)benzene (bisq x ) complexes was researched as candidates for the homogeneous partial oxidation of methane. Density functional theory (DFT) (M06 with Poisson continuum solvation) was used to investigate a variety of (bisq x ) ligand candidates involving different functional groups to determine the impact on RhIII(bisq x ) catalyzed methane functionalization. The free energy activation barriers for methane C–H activation and Rh–methyl functionalization at 298 K and 498 K were determined. DFT studies predict that the best candidate for catalytic methane functionalization is Rh III coordinated to unsubstituted bis(quinolinyl)benzene (bisq). Support is also found for the prediction that the η 2 -benzene coordination mode of (bisq x ) ligands on Rh encourages methyl group functionalization by serving as an effective leaving group for S N 2 and S R 2 attack.
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Spin liquids, multiferroics, and doubly-chiral helical structures are just some of the exotic magnetic states found in the langasite compounds. A subclass of the langasite group, the Te{sup 6+}-containing dugganites, has also shown exotic magnetism including magnetoelectric coupling, coexisting complex long-ranged ordered structures, and low-field induced magnetic transitions. Here, we present the first detailed structural study of Pb{sub 3}TeMn{sub 3}P{sub 2}O{sub 14} as well as the first neutron scattering measurements. This material undergoes long-range magnetic ordering, similar to the multiferroic Ba{sub 3}NbFe{sub 3}Si{sub 2}O{sub 14}, at T{sub N}=6.6 K, which is consistent with previous magnetization measurements. However unlike any other langasite or dugganite studied to date, we present evidence of a large, pseudohexagonal incommensurate supercell that alters the nuclear and magnetic structures away from the langasite ideal. - Graphical abstract: Two geometrically frustrated cationic substructures of the langasites and dugganites have profound effects on the magnetism of these compounds. In Pb{sub 3}TeMn{sub 3}P{sub 2}O{sub 14}, Mn{sup 2+} (S=5/2) isolated trinuclear units are shown in yellow, while the red distorted kagomé network is nonmagnetic. (For interpretation of the references to color the reader is referred to the web version of this article.) Highlights: • Polycrystalline Pb{sub 3}TeMn{sub 3}P{sub 2}O{sub 14} was prepared. • Found evidence of a large, pseudohexagonal supercell that is incommensurate with the subcell. • Long-range antiferromagnetic ordering is observed below T{sub N}=6.6 K similar to Ba{sub 3}NbFe{sub 3}Si{sub 2}O{sub 14}. • Broken symmetry probably causes magnetic peak splitting in this system.
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The host–guest chemistry between a series of anionic MOFs and their trapped counterions was investigated by single crystal XRD.
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We report low-temperature photoelectron spectra of isolated gas-phase complexes of the hexachloroplatinate dianion bound to the nucleobases uracil, thymine, cytosine, and adenine. The spectra display well-resolved, distinct peaks that are consistent with complexes where the hexachloroplatinate dianion is largely intact. Adiabatic electron detachment energies for the hexachloroplatinate-nucleobase complexes are measured as 2.26-2.36 eV. The magnitudes of the repulsive Coulomb barriers (RCBs) of the complexes are all ∼1.7 eV, values that are lower than the RCB of the uncomplexed PtCl{sub 6}{sup 2−} dianion as a result of charge solvation by the nucleobases. In addition to the resolved spectral features, broad featureless bands indicative of delayed electron detachment are observed in the 193 nm photoelectron spectra of the four clusters. The 266 nm spectra of the PtCl{sub 6}{sup 2−} ⋅ thymine and PtCl{sub 6}{sup 2−} ⋅ adenine complexes also display very prominent delayed electron emission bands. These results mirror recent results on the related Pt(CN){sub 4}{sup 2−} ⋅ nucleobase complexes [A. Sen et al., J. Phys. Chem. B 119, 11626 (2015)]. The observation of delayed electron emission bands in the PtCl{sub 6}{sup 2−} ⋅ nucleobase spectra obtained in this work, as for the previously studied Pt(CN){sub 4}{sup 2−} ⋅ nucleobase complexes, is attributed to one-photon excitation of nucleobase-centred excited states that can effectively couple to the electron detachment continuum, producing strong electron detachment. Moreover, the selective, strong excitation of the delayed emission bands in the 266 nm spectra is linked to fundamental differences in the individual nucleobase photophysics at this excitation energy. This strongly supports our previous suggestion that the dianion within these clusters can be viewed as a “dynamic tag” which has the propensity to emit electrons when the attached nucleobase decays over a time scale long enough to allow autodetachment.
Mass spectrometry continues to develop as a valuable tool in the analysis of proteins and protein complexes. In protein complex mass spectrometry studies, surface-induced dissociation (SID) has been successfully applied in quadrupole time-of-flight (Q-TOF) instruments. SID provides structural information on non-covalent protein complexes that is complementary to other techniques. However, the mass resolution of Q-TOF instruments can limit the information that can be obtained for protein complexes by SID. Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) provides ultrahigh resolution and ultrahigh mass accuracy measurements. In this study, an SID device was designed and successfully installed in a hybrid FT-ICR instrument in place of the standard gas collision cell. The SID-FT-ICR platform has been tested with several protein complex systems (homooligomers, a heterooligomer, and a protein-ligand complex, ranging from 53 kDa to 85 kDa), and the results are consistent with data previously acquired on Q-TOF platforms, matching predictions from known protein interface information. SID fragments with the same m/z but different charge states are well-resolved based on distinct spacing between adjacent isotope peaks, and the addition of metal cations and ligands can also be isotopically resolved with the ultrahigh mass resolution available in FT-ICR.
Two new Ni(II) complexes, the homoleptic [Ni-(8PCy2NH)2]2+ complex (8PCy 2NH = 3,7-cyclohexyl-1-amino-3,7-diphosphacyclooctane) containing two pendant amines on adjacent ligands, and the heteroleptic [Ni(8PCy2NH)(dppe)]2+ complex (dppe = bis-(diphenylphosphino)ethane) containing only a single pendant amine, have been synthesized, and their electrochemical properties are reported. The [Ni(8PCy2NH)(dppe)]2+ complex is capable of heterolytically cleaving hydrogen, allowing for the first observation of an endoprotonated nickel hydride related to the [Ni(PR2NR'2)2]2+ family of complexes. The [Ni(8PCy2NH)(dppe)]2+ complex did not exhibit electrocatalytic H2 oxidation activity; however, [Ni(8PCy2NH)2]2+ is an active electrocatalyst for H2 oxidation with a maximum turnover frequency (kobs) of 18 s-1 under 1 atm H2 at Ecat/2 = -0.71 V versus the ferrocenium/ferrocene (Cp2Fe+/0) couple. In addition to an analysis of the effect of the number of pendant amines on the rates of electrocatalytic H2 oxidation of compounds related to the [Ni(PR 2NR'2)2]2+ family, the effect of the secondary pendant amine on intermolecular deprotonation is discussed.