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At least 73 records · Page 4

A large dataset of detection and submeter-accurate 3-D trajectories of juvenile Chinook salmon

Abstract Acoustic telemetry has been used extensively to study the behavior of aquatic animals. The Juvenile Salmon Acoustic Telemetry System (JSATS) is one such system; it was developed for studying juvenile salmonids but has been used to study numerous species. A recent innovation of the JSATS system is an acoustic transmitter that is small enough to be implanted through injection or small incision that doesn’t require sutures. Use of the JSATS system involves deploying cabled acoustic receivers at hydroelectric dams, or other structures, and autonomous acoustic receivers in free-flowing sections of a river. The raw detections from acoustic-tagged fish are processed to remove potential false positives. The clean detections (5,147,996 total) are used to generate detection events and to compute 3-D trajectories (403,900 total), which are used to assign fish to a passage route through a dam. Controlled field testing involving a high-accuracy Global Positioning System receiver is done to validate the submeter accuracy of the trajectories. The JSATS dataset could be reused for expanding the understanding of near-dam fish behavior.

59 BASIC BIOLOGICAL SCIENCES↗

Towards automated and real-time multi-object detection of anguilliform fishes from sonar data using YOLOv8 deep learning algorithm

Eels (Anguilla spp.), including American eels (Anguilla rostrata), European eels (Anguilla anguilla), and Japanese eels (Anguilla japonica), are species of critical management and regulatory concern due to their vulnerability to various stressors during downstream migrations. Accurate and efficient detection of migrating eels can improve our understanding of fish behaviors and fish-hydraulic structure interactions, thereby facilitating the design, operation, and optimization of more effective downstream passage facilities from both biological and economic perspectives. However, a real-time, automated framework for detecting migrating eels in real-world applications is currently lacking. Leveraging imaging sonar as a reliable technology for fish passage monitoring, field data are acquired using imaging sonar and then converted to single sonar frames/images for subsequent analysis. In this study, a framework based on the You Only Look Once Version 8 (YOLOv8)-based convolutional neural network is proposed for multi-object detection of eels and non-eel fish using the sonar images after image subtraction and additional wavelet denoising. The results from both training and testing phases demonstrate that the framework's ability can successfully detect both eels and non-eel fish in preprocessed sonar images, achieving F1-scores and mAP@0.50 exceeding 0.84. Additionally, the incorporation of wavelet denoising during preprocessing slightly improve detection performance. Furthermore, the transferability of this framework from eel to lamprey detection is demonstrated to be feasible given the similar morphological characteristics of these two species. Overall, the proposed framework achieves accurate and efficient detection of migrating eels, providing reliable and real-time information that can help conserve vulnerable eel and eel-like populations.

Deep learning↗

Sonic boom effect on fish: Observations

Motion pictures of fish in a small tank at the time a bullet traveling 1200 m/sec passes a few centimeters above indicate that fish sense the passage of the shock wave but suffer no ill effects. The pressure rise at the bow shock wave was 0.26 atm or 275 times that associated with a strong sonic boom, for example, from the proposed supersonic transport.

Wilkins, M. E.↗

Deep Learning for Fish Identification from Sonar Data: CRADA 481 [Abstract only]

To help solve the challenges of hydropower energy production related to the potential for eel injury and mortality from passage through hydropower turbines, we will develop a deep learning method for identifying migrating eels from imaging sonar. This project continues with a prior project conducted by the Pacific Northwest National Laboratory (PNNL) and the Electric Power Research Institute (EPRI) in FY2018-2019. The proposed method employs Convolution Neural Network (CNN), a powerful deep learning method for image classification, to distinguish between images of eels and non-eel moving objects. We propose to collect more laboratory data and add more existing field data to train a powerful deep learning model. In addition to eels and sticks as classified in previous studies, we will add images containing several non-eel fish species and macrophyte mats to the training data. A multi-class classification model will be developed to distinguish these objects. Object detection algorithm will be explored and developed to locate and identify multiple objects in each sonar frame. Motion analysis will be performed to track the movement of objects in sonar video clips. We will also improve the data conversion algorithm so that it can read in both DIDSON and ARIS (both are imaging sonars developed by Sound Metrics Corp) data files and convert them to images with comparably high resolution, regardless of the varying detection ranges in different environments. The developed algorithms will be packaged as a software with a graphic user interface. The software will be evaluated by external collaborators in the field. The developed framework can be generalized for automatic monitoring of fish passage and migration using other imaging sonars like ARIS and will benefit the design and operation of ecologically friendly hydroelectric projects. The developed wavelet and CNN model configuration parameters can potentially be transferred to lamprey detection in similar riverine environments.

13 HYDRO ENERGY↗

Creation of a prototype biomimetic fish to better understand impact trauma caused by hydropower turbine blade strikes

Biomimetic model organisms could be useful surrogates for live animals in many applications if the models have sufficient biofidelity. One such application is for use in field and laboratory tests of fish mortality associated with passage through hydropower turbines. Laboratory trials suggest that blade strikes are especially injurious and often causes mortality when fish are struck by thinner blades moving at higher velocities. Dose-response relationships have been created from these data, but the exact relationship between fish mortality and the actual forces enacted on fish during simulated blade strike testing remains unknown. Here, we describe the methods used to create a prototype biomimetic model fish composed of ballistic gelatin and covered with a surrogate skin to better approximate the biomechanical properties of a fish body. Frozen fish were scanned with high-fidelity laser scanners, and a 3D-printed, reusable mold was created from which to cast our gelatin model. Computed tomography scan data, imaged directly or taken from online data repositories, were also successfully used to create CAD models for use in additive manufacturing of molds. One 3-axis accelerometer was embedded into the gelatin to compare accelerometer data to dose-response data from previous laboratory research on live fish. The resulting model ( i.e. , Gelfish) had a statistically indistinguishable tissue durometer to that of real fish tissue and preliminary blade strike impact testing suggested its overall flexibility was similar to that of live fish. Gelfish was designed with biofidelity as its guiding principle and our results suggest initial experimentation was successful. Future research will include replication of initial Gelfish test results, quantitative measurement of model flexibility relative to real fish, and inclusion of surrogate skeletal structures to enhance biofidelity. Use of more sophisticated sensors would also better quantify the physical forces of blade strike impact and help determine how said forces correlate with rates of mortality observed during tests on live fish.

36 MATERIALS SCIENCE↗

Hydropower Biological Evaluation Toolset Best Practice Guide

Field studies using live fish are necessary for the evaluation of turbine biological performance, but they cannot determine the specific hydraulic conditions or physical stresses experienced by the fish, the locations where deleterious conditions occur, or the specific causes of the biological response. Using the Sensor Fish (SF) sensing technology, this deficiency can be overcome because the SF can be released independently or concurrently with live fish directly into operating infrastructure, and it takes high-frequency measurements of hydraulic conditions such as pressure, acceleration, and rotation acting on a body in situ during downstream passage. The Hydropower Biological Evaluation Tools (HBET; Hou et al. 2018) software package, developed by Pacific Northwest National Laboratory (PNNL), is designed to assemble, organize, and process data collected by the PNNL-developed SF and by live fish. HBET was developed specifically to design SF field studies, process the raw data, and analyze the processed data efficiently and scientifically. Its objectives are to facilitate SF studies focused on characterizing hydraulic conditions and to apply SF data for evaluating the impacts on fish from passage through hydro-structures. HBET allows users to design new studies, analyze data, perform statistical analyses, and evaluate predicted biological responses. It can be used by researchers, turbine designers, hydropower operators, and regulators to evaluate hydro-structures to enhance environmental sustainability in a cost-effective manner.

13 HYDRO ENERGY↗

Mutually promoting or constraining? Disentangling the superimposed effect of velocity and illuminance on fish motion in low-velocity flows with a novel metric

Global climate change, species invasion, and human activities such as the construction of hydraulic facilities are contributing to the worldwide degradation of fish stocks. As a pivotal environmental factor that affects fish migration and population distribution, low-velocity flow has not drawn enough attention despite its extensive presence in various ecoregions. Herein, to understand the behavioural profiles of fish in low-velocity flow, we examined the motility and swimming performance of two representative cyprinids, grass carp (GC, Ctenopharyngodon idella) and silver carp (SC, Hypophthalmichthys molitrix), under the combined effect of different flow velocities and illuminance ranges. The two species were exposed to two flow velocities (0.15 and 0.25 m/s) and three illuminance ranges (100.0 – 0.9 lx, 300.0 – 2.5 lx, and 700.0 – 4.9 lx). A novel behavioural metric, composed of light preference, cruising swimming speed, rheotaxis index (RI), swimming stability (SS), and the probability of moving forwards/backwards over a certain distance (PM f -0.1 and PM b -0.1), was developed to depict the motion strategy of fish fully. By investigating the individual distribution of the fish in light gradient, we confirmed the scototaxis of GC and found the oscillating light preference in SC that changed from 84.4 – 10.2 lx to 6.0 – 2.1 lx and disappeared with increasing illuminance. At the given velocities, the RI and SS increased in both species with a faster flow, and SC was more forward-prone and stable than GC. Despite its fluctuating light preference, the higher illuminances heightened the RI and SS in SC; while in GC, higher illuminances inhibited the SS and had no impact on the RI. The results of PM f -0.1 and PM b -0.1 indicated that a higher flow velocity could facilitate temporary upstream swimming in both species, while illuminance could promote the same effect in SC only. Finally, our study proposed possible moving manoeuvres in fine-scale spatio-temporal scenarios such as attraction flow and untraditional passages and provides valuable insights into fish community dynamics, laying the groundwork for alleviating the threat from invasive species and for future fish population recovery.

59 BASIC BIOLOGICAL SCIENCES↗

Wall diffuser velocity effects on American Shad ( Alosa sapidissima ) inside a fishway entrance channel

Attraction water for fishways is typically introduced through a diffuser inside the entrance channel, often through the floor or wall. In the spring of 2019, this laboratory study examined how 151 adult American Shad (Alosa sapidissima) responded to different gross velocities through a wall diffuser inside a full-scale fishway entrance channel. Two velocity conditions were studied, 0.152 m/s and 0.305 m/s, both without turning vanes inside the auxiliary water channel. The fish were tracked using the passive integrated transponder telemetry technique. The results of the experiments showed no difference in American Shad behavior when exhibited to the low and high velocity treatments. Moreover, shad passed the diffuser in roughly 3 out of every 4 attempts, regardless of the treatment. However, the similarity in shad behavior and passage performance is believed to be more of a result of the similarity in flow fields that resulted from the lack of flow guidance devices inside the auxiliary water channel. Furthermore, these findings therefore highlight the importance of properly maintained flow guidance devices, an often-overlooked component of an auxiliary water system.

13 HYDRO ENERGY↗

Performance Comparisons for Artificially Propagated and Wild Pacific Lamprey Juveniles and Larvae

ABSTRACT Artificially propagated Pacific lamprey ( Entosphenus tridentatus ) are produced for restoration and for use in dam passage studies to reduce the demand for wild fish. Such uses require that animals are representative of their wild counterparts. Previous work indicated that this is true for Pacific lamprey larvae and juveniles reared in the hatchery with respect to the length of sustained swimming. However, more subtle differences in behaviour and performance that lamprey need to survive have not been assessed. In this study, artificially propagated and wild fish were compared in laboratory tests under no‐flow conditions to examine light avoidance, burrowing speed, burst swim speed, volitional routine swim speed and time to come to rest. Most larvae burrowed in less than a minute, and we found highly significant differences ( p < 0.001) between artificially propagated and wild larvae burrowing times, a critical escape behaviour. This could have implications for studies of larval entrainment at irrigation diversion canals or in turbine boils at dams. Interestingly, all of the wild juveniles tested came to rest quickly after introduction to the chamber (1.5 min), while artificially propagated lamprey swam robotically near the surface and 48% did not come to rest in the first 10 min (median time to rest = 9.5 min). In contrast, wild juveniles quickly (median = 1.47 min) sought areas near the tank bottom and attached strongly with their oral disc. Such behavioural differences could have important survival consequences for artificially propagated lamprey as they approach turbine intakes, bypass screens and irrigation diversion headgates. This study highlights the need to conduct behavioural assays that examine subtleties of fish behaviour that can be missed with traditional swim tunnel comparisons.

Frick, Kinsey [Fish Ecology Division, Northwest Fi↗

State-Space Model to Estimate Salmon Escapement Using Multiple Data Sources

Abstract Accurate estimates of salmonids passing Lower Granite Dam on the Snake River, by species and origin, are a critical input to assessing the status and trends of various populations as well as successful management of fisheries in the Snake River basin. Here, we describe a state-space model that estimates such escapement past a dam by using window counts, PIT tag observations, and data from an adult fish trap, accounting for issues such as nighttime passage, fallback and reascension, potential observation error at the window, and uncertainty in the adult trap rate. We tested the approach using a simulation framework that mimicked several levels of observation error, differences between nighttime passage and reascension rates, and the possibility of the adult trap being closed for some period of time. Our results demonstrate that the model produced unbiased estimates across all tested scenarios. We also applied this model to empirical data from Lower Granite Dam to produce estimates of wild, clipped hatchery, and unclipped hatchery spring/summer-run Chinook Salmon Oncorhynchus tshawytscha and steelhead O. mykiss from spawn years 2010–2019.

See, Kevin E. (ORCID:0000000297626442)↗

Bonneville Dam Powerhouse 2 Gatewell Improvement Post Construction Evaluation (Final Report)

Modifications to vertical barrier screens (VBS) and the addition of concrete corbels to improve passage conditions for juvenile salmonids in the gatewells of Bonneville Dam’s second powerhouse (B2) were completed prior to the 2024 passage season. To evaluate the effectiveness of those modifications, PNNL carried out a post construction evaluation to contrast fish condition and mortality between two turbine unit operational ranges within the peak efficiency range. A block-treatment study design was implemented in 2024 to contrast descaling and mortality of juvenile salmonids sampled in the juvenile fish facility following exposure to turbine operations (middle versus upper 1% peak efficiency range) during spring and summer passage periods. In spring, 1.96% of juvenile salmonids sampled during mid-1% operations were descaled and 0.46% were mortalities. Of those sampled during upper 1% unit operations in spring, 2.90% were descaled and 0.95% were mortalities. Although these differences appeared to be meaningful, substantial exceedances of the upper 1% limit occurred during two treatment blocks of the spring study period. Fish collected during the upper 1% treatment of these two blocks experienced substantially higher rates of descaling and mortality compared to those collected during mid-1% treatments. Censoring these two upper 1% samples from the spring study period resulted in upper 1% descaling and mortality rates that were statistically similar to those from the mid-1% treatment. During the summer study period, 0.99% of juveniles sampled during mid-1% operations were descaled and 0.33% suffered mortality; these rates were significantly lower than the descaling (2.80%) and mortality (1.73%) rates observed during upper 1% treatments. Comparing the results from the 2024 study to those from the historical (2008–2013) baseline of unmodified units revealed that the descaling and mortality rates observed during upper 1% operations in spring 2024 were near the upper end of the historic range observed for mid-1% operations. Spring 2024 upper 1% descaling and mortality rates were below, or well below the median of historical mid and upper 1% (combined) rates, which suggests that the modifications have had a positive effect. Summer 2024 upper 1% descaling and mortality rates were at or above the top of the range of historical mid 1% and above or well above the median of historical mid and upper 1% (combined) rates. It is important to keep in mind that 2024 is a single year when considering these comparisons. Additional study could help confirm these results or seek a level of operation that achieves the desired outcomes for fish.

13 HYDRO ENERGY↗

Applying Two Active Acoustic Technologies to Document Presence of Large Marine Animal Targets at a Marine Renewable Energy Site

Coastal regions are highly used by humans. The growing marine renewable energy (MRE) industry will add to existing anthropogenic pressures in these regions. Regulatory bodies require animal risk assessment before new industrial activities can progress, and MRE is no exception. Preliminary data of marine mammal use of an MRE device deployment location could be informative to permitting. A combination of downlooking hydroacoustics using an echosounder and acoustic camera (imaging sonar) was used to provide a number of large targets (proxy for large fish and marine mammals) in an area of interest for MRE tidal turbine deployment in Western Passage, Maine, USA. Data were collected in May, June, August, and September of 2010 and 2011. Of the nine large targets confirmed to be animals, eight were porpoises and one was a shark. Few large targets were observed in May and June, with the majority (90%) being present in August and September of both years. The most large targets were observed when tidal current speed was less than 1 m·s−1. These data provide a preliminary assessment of large targets in a single location over sixteen 24-h surveys. The aforementioned methodology could be used for future pre- and post-installation assessments at MRE device deployment locations. Their use in concert with visual and passive acoustic monitoring can provide water depth usage by marine mammals, which is a metric that is difficult to assess with passive acoustic and visual techniques.

Staines, Garrett↗

American eel resilience to simulated fluid shear associated with passage through hydroelectric turbines

American eel (Anguilla rostrata) populations have declined within their native range along the eastern coast of North America due to factors such as commercial fishing, habitat alteration, and dams. American eel are catadromous fish species, and high mortality rates (>40%) have been observed for freshwater life-stage adult eel passing downstream through hydropower turbines. Lacerations and sectioning of fish have been observed downstream of turbines and these injuries are commonly associated with direct contact with the turbine runner, whether through blade strike or pinching and grinding. Exposure to fluid shear may also be a source of injury, however, little is known about American eel susceptibility to this physical stressor. Eels are considerably flexible when compared to other fish species and lack other morphological characteristics that would make them susceptible to fluid shear, such as protruding eyes, large scales, and large operculum. European eel, which have previously been tested for susceptibility to fluid shear, were found to be resilient. To determine if American eel are also resilient to fluid shear, forty American eel were exposed to a water jet, simulating severe fluid shear (strain rate > 800 s –1 ) that fish may experience when passing downstream through turbines. No immediate or delayed (48 h) signs of injury were observed after exposure to severe fluid shear. Based on this study, and a previous study conducted on American eel susceptibility to barotrauma, the source of injury and mortality of American eel passing through turbines is likely attributed to blade strike or pinching and grinding.

54 ENVIRONMENTAL SCIENCES↗

Detection efficiency of adult Pacific lamprey passage counts at Leaburg Dam and upstream distribution in the McKenzie River (Oregon, USA)

Abstract Adult Pacific lamprey ( Entosphenus tridentatus ) were counted using consistent methodology since 2005 with a video monitoring system as they passed Leaburg Dam (McKenzie River, Oregon, USA) en route to upstream spawning areas. In this study we evaluated the detection efficiency of the video system and upstream distribution of Pacific lamprey using the video counts of lamprey passage (herein, “dam counts”), passive integrated transponder (PIT) tags, and radio telemetry. In 2019–2020 we collected, tagged and tracked 32 adult lamprey (4 from the McKenzie River and 28 that were translocated from Willamette Falls). All fish were tagged and released into the tailrace of Leaburg Dam in June 2019. Oregon Department of Fish and Wildlife employees and volunteers from the local community conducted mobile radiotracking above and below the dam in drift boats (114 mainstem river kilometers) and on foot (several tributaries). The estimated detection efficiency for dam counts was 92% (95% confidence interval: 67%–99%). Fifty percent (16 of 32) of the tagged lamprey passed the dam, including 13 of 28 that were translocated. Thirty‐seven percent (6 of 16) of lamprey that passed Leaburg Dam were detected in a restored reach of the South Fork McKenzie, 32.6 river kilometers upstream of the dam.

Romer, Jeremy D.↗

Gambusia holbrooki Survive Shear Stress, Pressurization and Avoid Blade Strike in a Simulated Pumped Hydroelectric Scheme

Pumped hydroelectric energy storage (PHES) projects are being considered worldwide as a means of achieving political renewable energy targets in a way that stabilises baseload energy supply from often intermittent renewable energy sources. Unlike a conventional hydroelectric system that only pass water in a downstream direction, a feature of PHES is that it relies on the bi-directional flow of water. In some cases this flow can be across different waterbodies or catchments, posing a risk of inadvertently expanding the range of aquatic animals like fish. The risk of this happening depends on the likelihood of survival of individuals, which remains poorly understood for turbines that are pumping rather than generating. This study quantified the survival of a globally widespread and invasive poeciliid fish, Eastern gambusia (Gambusia holbrooki) when exposed hydraulic stresses characteristic of what would be experienced through a PHES during the pumping phase. A shear flume and hyperbaric chamber were used to expose fish to different strain rates and rapid and sustained pressurisation. A blade strike model was also used to predict survival of fish passing through a Francis dual turbine / pump. The ranges simulated were based on design and operational conditions provided for a PHES scheme being proposed in south-eastern Australia. All gambusia tested survived extremely high (up to 7600 kPa gauge pressure) pressurisation, high levels of shear stress (up to 1853 s -1 ), and the majority (> 93 %) were unlikely to be struck by a turbine blade. Given their tolerance to these extreme simulated stresses, we conclude that gambusia will likely survive passage through a PHES scheme. Therefore, where a new PHES poses the risk of inadvertently expanding the range of gambusia or similar poeciliid species, measures to minimise their spread or mitigate their ecosystem impacts should be considered.

25 ENERGY STORAGE↗

Dark matter clumps as sources of gravitational-wave glitches in LIGO-Virgo-KAGRA data

We consider the hypothetical possibility that nonstationary glitch features in the noise of ground-based gravitational-wave detectors could be produced by small dark matter clumps that pass through the earth in the vicinity of gravitational-wave detectors. Here, we first derive the gravitational-wave strain that would be generated by the passage of such a dark matter clump. We find that the strain is primarily sourced by the Newtonian gravitational acceleration of the mirrors toward the clump and by the Shapiro time delay of the photons in the laser beams as they pass through the gravitational potential created by the dark matter clump. We also find that the Newtonian acceleration effect dominates the gravitational-wave strain for both ground and space-based interferometers. We then compare our dark matter clump, gravitational-wave strain model to 84 Koi-Fish glitches detected during the second observing run of the LIGO/Virgo/KAGRA Collaboration through a Markov chain Monte Carlo Bayesian analysis. We find that all glitches but nine can be confidently rejected as having originated from dark matter clumps. For the remaining glitches, the dark matter hypothesis cannot be excluded, and the maximum a posteriori parameters yield minimum densities of about 10 −7 g⁡/cm 3 , within the model. These results allow us to place the first direct upper limits with gravitational-wave detectors on the local over-density of dark matter in the form of clumps in the local neighborhood of Earth, namely 𝜌 DM ⁢clumps ≲ 10 −15 g⁡/cm −3 .

Astronomy and AstroPhysics↗

Evaluation of Potential In Vitro Recombination Events in Codon Deoptimized FMDV Strains

Codon deoptimization (CD) has been recently used as a possible strategy to derive foot-and-mouth disease (FMD) live-attenuated vaccine (LAV) candidates containing DIVA markers. However, reversion to virulence, or loss of DIVA, from possible recombination with wild-type (WT) strains has yet to be analyzed. An in vitro assay was developed to quantitate the levels of recombination between WT and a prospective A24-P2P3 partially deoptimized LAV candidate. By using two genetically engineered non-infectious RNA templates, we demonstrate that recombination can occur within non-deoptimized viral genomic regions (i.e., 3'end of P3 region). The sequencing of single plaque recombinants revealed a variety of genome compositions, including full-length WT sequences at the consensus level and deoptimized sequences at the sub-consensus/consensus level within the 3'end of the P3 region. Notably, after further passage, two recombinants that contained deoptimized sequences evolved to WT. Overall, recombinants featuring large stretches of CD or DIVA markers were less fit than WT viruses. Our results indicate that the developed assay is a powerful tool to evaluate the recombination of FMDV genomes in vitro and should contribute to the improved design of FMDV codon deoptimized LAV candidates.

59 BASIC BIOLOGICAL SCIENCES↗

Within and Among Fish Species Differences in Simulated Turbine Blade Strike Mortality: Limits on the Use of Surrogacy for Untested Species

Use of surrogacy remains a useful method for prioritizing research on representatives of at-risk groups of fishes, yet quantifiable evidence in support of its use is generally not available. Blade strike impact represents one of the most traumatic stressors experienced by fish during non-volitional movements through hydropower turbines. Here, we use data generated from laboratory trials on blade strike impact experiments to directly test use of surrogacy for salmonid and clupeid fishes. Results of logistic regression indicated that a -taxonomic (genus) variable was not a significant predictor of mortality among large rainbow trout and brook trout. Similar results were found for young-of-the-year shad species, but genus-level taxonomy was a significant predictor of mortality while species was not. Multivariate analysis of morphometric data showed that shad clustered together based on similarities in fish shape which was also closely associated with genus. Logistic regression including size as a major covariate suggested total fish length was not a significant predictor of mortality, yet dose–response data suggest differential susceptibility to lower strike velocities. We suggest that use of surrogacy among species is justifiable but should be avoided within a species since the effects of size remain unclear.

59 BASIC BIOLOGICAL SCIENCES↗