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At least 73 records · Page 4
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

The effect of dietary supplementation of Lycium barbarum leaves on the growth performance, organ indexes and intestinal microflora of rats

This study was conducted to investigate both fruit and different levels of leaf supplementation on the growth performance, organ indices and intestinal microflora of rats. Twenty-five healthy male Sprague–Dawley rats were randomly divided into five groups. The rats in the control (NC) and positive control (PC) groups were fed by gavage a basal diet and a basal diet with 4 g/kg of L. barbarum fruit homogenate, respectively. The test (LD, MD, and HD) groups were fed basal diets with additional 2, 4, and 8 g/kg of L. barbarum leaf homogenate, respectively. The feeding period was 35 d. The result revealed that the rats in the LD group had the highest average weight gain ( p < 0.05). The cardiac and renal indexes in the LD and MD groups were significantly higher than in NC group, respectively ( p < 0.05). Diversity analysis revealed that adding low concentrations of L. barbarum leaf homogenates markedly reduced the Shannon index of the rats cecum ( p < 0.05). The relative abundance of Verrucomicrobiota was higher in the LD group than those in other groups ( p < 0.05). The relative abundance of Actinobacteriota was found significantly higher in PC group than others ( p < 0.05). The relative abundance of Akkermansia in LD group was the highest ( p < 0.05). The relative abundance of Romboutsia in the PC group was considerably higher than that in other groups. The relative abundance of Candidatus_Saccharimonas in the supplementation groups was appreciably lower than those found in other groups. The relative abundance of Alloprevotella was significantly lower in PC, LD, and MD groups than in NC and HD groups ( p < 0.05). The relative abundance of Oscillibacter was significantly higher in HD group than in other groups ( p < 0.05). Thus, L. barbarum leaf homogenate fed to rats could increase their growth performance, internal organ weights and additionally enhance the relative abundance of beneficial bacteria. Therefore, based on the obtained data in the current study, a dose of L. barbarum leaf homogenate supplemented with 2 g/kg in diet is recommended, however, further studies are required to confirm, especially in animals.

Guo, Yindi↗
DOE OSTI2024

Unveiling the Arsenal of Apple Bitter Rot Fungi: Comparative Genomics Identifies Candidate Effectors, CAZymes, and Biosynthetic Gene Clusters in Colletotrichum Species

The bitter rot of apple is caused by Colletotrichum spp. and is a serious pre-harvest disease that can manifest in postharvest losses on harvested fruit. In this study, we obtained genome sequences from four different species, C. chrysophilum, C. noveboracense, C. nupharicola, and C. fioriniae, that infect apple and cause diseases on other fruits, vegetables, and flowers. Our genomic data were obtained from isolates/species that have not yet been sequenced and represent geographic-specific regions. Genome sequencing allowed for the construction of phylogenetic trees, which corroborated the overall concordance observed in prior MLST studies. Bioinformatic pipelines were used to discover CAZyme, effector, and secondary metabolic (SM) gene clusters in all nine Colletotrichum isolates. We found redundancy and a high level of similarity across species regarding CAZyme classes and predicted cytoplastic and apoplastic effectors. SM gene clusters displayed the most diversity in type and the most common cluster was one that encodes genes involved in the production of alternapyrone. Our study provides a solid platform to identify targets for functional studies that underpin pathogenicity, virulence, and/or quiescence that can be targeted for the development of new control strategies. With these new genomics resources, exploration via omics-based technologies using these isolates will help ascertain the biological underpinnings of their widespread success and observed geographic dominance in specific areas throughout the country.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Omics-Based Comparison of Fungal Virulence Genes, Biosynthetic Gene Clusters, and Small Molecules in Penicillium expansum and Penicillium chrysogenum

Penicillium expansum is a ubiquitous pathogenic fungus that causes blue mold decay of apple fruit postharvest, and another member of the genus, Penicillium chrysogenum, is a well-studied saprophyte valued for antibiotic and small molecule production. While these two fungi have been investigated individually, a recent discovery revealed that P. chrysogenum can block P. expansum-mediated decay of apple fruit. To shed light on this observation, we conducted a comparative genomic, transcriptomic, and metabolomic study of two P. chrysogenum (404 and 413) and two P. expansum (Pe21 and R19) isolates. Global transcriptional and metabolomic outputs were disparate between the species, nearly identical for P. chrysogenum isolates, and different between P. expansum isolates. Further, the two P. chrysogenum genomes revealed secondary metabolite gene clusters that varied widely from P. expansum. This included the absence of an intact patulin gene cluster in P. chrysogenum, which corroborates the metabolomic data regarding its inability to produce patulin. Additionally, a core subset of P. expansum virulence gene homologues were identified in P. chrysogenum and were similarly transcriptionally regulated in vitro. Molecules with varying biological activities, and phytohormone-like compounds were detected for the first time in P. expansum while antibiotics like penicillin G and other biologically active molecules were discovered in P. chrysogenum culture supernatants. Our findings provide a solid omics-based foundation of small molecule production in these two fungal species with implications in postharvest context and expand the current knowledge of the Penicillium-derived chemical repertoire for broader fundamental and practical applications.

Bartholomew, Holly P. (ORCID:0000000292726399)↗
DOE OSTI2025

Diversity of Sordariales Fungi: Identification of Seven New Species of Naviculisporaceae Through Morphological Analyses and Genome Sequencing

Thanks to next-generation sequencing (NGS) technologies, the diversity of fungi can now be investigated through the analysis of their genome sequences. Naviculisporaceae is a family within the Sordariales, whose diversity is not well-known, with only one genome sequence published for this family. Here, we report on the isolation and cultivation of 20 new strains of Naviculisporaceae. Their genome sequences, as well as those of the five commercially available strains, were determined, thus providing complete genome sequences for 25 new Naviculisporaceae strains. Species delimitation was conducted using a combination of (1) ITS + LSU phylogenetic analysis of the new isolates along with other known species of the family, (2) comparisons between DNA barcode sequences of the new strains with those of the known species, and (3) average genome-wide nucleotide identity calculation. We built a phylogenomic tree and studied the organization of the mating-type locus. In vitro fruiting was obtained for 16 strains, enabling the definition of seven new species, namely Pseudorhypophila gallica, Pseudorhypophila guyanensis Rhypophila alpibus, Rhypophila brasiliensis, Rhypophila camarguensis, Rhypophila reunionensis and Rhypophila thailandica, as well as two new combinations, namely Pseudorhypophila latipes and Pseudorhypophila oryzae. Eight strains for which in vitro fruiting was not obtained may belong to additional new species. These results expand the known diversity of the Naviculisporaceae and greatly enlarge the genomic data available for the family.

Naviculisporaceae↗
NASA NTRS1976

Mechanisms of deterioration of nutrients

Methods which produce freeze dried foods of improved quality were examined with emphasis on storage stability. Specific topics discussed include: microstructure of freeze dried systems, investigation of structural changes in freeze dried systems, artificial food matrices, osmotic preconcentration to yield improved quality freeze dried fruits, and storage stability of osmotically preconcentrated freeze dried fruits.

Karel, M.↗
NASA NTRS1980

Response of citrus and other selected plant species to simulated HCL - acid rain

Mature valencia orange trees were sprayed with hydrochloric acid solutions (pH 7.8, 2.0, 1.0, and 0.5) in the field at the full bloom stage and at one month after fruit set. Potted valencia orange and dwarf citrus trees, four species of plants native to Merritt Island, and four agronomic species were exposed to various pH levels of simulated acid rain under controlled conditions. The acid rain was generated from dilutions of hydrochloric acid solutions or by passing water through an exhaust generated by burning solid rocket fuel. The plants were injured severely at pH levels below 1.0, but showed only slight injury at pH levels of 2.0 and above. Threshold injury levels were between 2.0 and 3.0 pH. The sensitivity of the different plant species to acid solutions was similar. Foliar injury symptoms were representative of acid rain including necrosis of young tissue, isolated necrotic spots or patches, and leaf abscission. Mature valencia orange trees sprayed with concentrations of 1.0 pH and 0.5 pH in the field had reduced fruit yields for two harvests after the treatment. All experimental trees were back to full productivity by the third harvest after treatment.

Knott, W. M.↗
NASA NTRS1981

CROP type analysis using Landsat digital data

Classification and statistical sampling techniques for crop type discrimination using Landsat digital data have been developed by the University of California in cooperation with NASA and the California Department of Water Resources. Ratioed bands (MSS 7/5 and 5/4) and a sun-angle corrected Euclidean albedo band were prepared from data for the Sacramento Valley for five different dates. The test area was stratified into general crop groupings based on the particular patterns of irrigation timing for each crop. Data classified within each stratum were used to produce a crop type map. Comparison with ground data indicates that certain crops and crop groups are discernable. Small grains and rice are easily identifiable, as are deciduous fruit varieties as a group. However, it is not feasible to separate various fruit and nut varieties, or separate vegetable crops with these techniques at present.

Brown, C. E.↗
NASA NTRS1981

Freeze Prediction Model

Measurements of wind speed, net irradiation, and of air, soil, and dew point temperatures in an orchard at the Rock Springs Agricultural Research Center, as well as topographical and climatological data and a description of the major apple growing regions of Pennsylvania were supplied to the University of Florida for use in running the P-model, freeze prediction program. Results show that the P-model appears to have considerable applicability to conditions in Pennsylvania. Even though modifications may have to be made for use in the fruit growing regions, there are advantages for fruit growers with the model in its present form.

Morrow, C. T.↗
NASA NTRS1981

The 1978 Pennsylvania Orchard and Vineyard Inventory Survey

Significant developments in the fruit industry in Pennsylvania are reported to provide basic information as a guide in the production and marketing of apples, pears, cherries, peaches, grapes, plums, prunes and nectarines. Tables show the number of growers, trees and acres by kind of fruit as well as the age of the trees, the number of barrels produced, and production by county and region.

Source record↗
NASA NTRS1988

Infrared imaging of comets

Thermal infrared imaging of comets provides fundamental information about the distribution of dust in their comae and tails. The imaging program at NASA Marshall Space Flight Center (MSFC) uses a unique 20-pixel bolometer array that was developed to image comets at 8 to 30 micrometer. These images provide the basis for: (1) characterizing the composition and size distribution of particles, (2) determining the mass-loss rates from cometary nuclei, and (3) describing the dynamics of the interaction between the dust and the solar radiation. Since the array became operational in 1985, researchers have produced a unique series of IR images of comets Giacobini-Zinner (GZ), Halley, and Wilson. That of GZ was the first groundbased thermal image ever made of a comet and was used to construct, with visible observations, an albedo map. Those data and dynamical analyses showed that GZ contained a population of large (approximately 300 micrometer), fluffy dust grains that formed a distinict inner tail. The accumulating body of images of various comets has also provided a basis for fruitfully intercomparing comet properties. Researchers also took advantage of the unique capabilities of the camera to resolve the inner, possible protoplanetary, disk of the star Beta Pictoris, while not a comet research program, that study is a fruitful additional application of the array to solar system astronomy.

Telesco, Charles M.↗
NASA NTRS1991

Space Exposed Experiment Developed for Students (SEEDS) P-0004-2

This cooperative endeavor of NASA Headquarters, the NASA Langley Research Center, and the George W. Park Seed Company, resulted in the distribution, by the end of March, 1990, of approximately 132,000 space exposed experiment developed for students (SEEDS) kits to 64,000 teachers representing 40,000 classrooms and 3.3 million kindergarden through university students. Kits were sent to every state, as well as to 30 foreign countries. Preliminary radiation data indicates that layer A received 725 rads, while layer D received 350 rads. Germination rate was reported to be 73.8 percent for space exposed seeds and 70.3 percent for earth based control seeds. Tests conducted within the first six months after retrieval indicated space exposed seeds germinated in an average of 8.0 days, while earth based control seeds' average germination rate was 8.3 days. Some mutations (assumed to be radiation induced) reported by students and Park Seed include plants that added a leaf instead of the usual flower at the end of the flower front and fruit produced from a flower with a variegated calyx bore seeds producing albino plants, while fruit from a flower with a green calyx from the same plant bore seeds produced green plants.

Grigsby, Doris K.↗
NASA NTRS1992

Space Exposed Experiment Developed for Students (SEEDS) (P0004-2)

SEEDS, a cooperative endeavor of NASA Headquarters, the NASA Langley Research Center, and the George W. Park Seed Company, resulted in the distribution of approximately 132,000 SEEDS kits to 3.3 million students. Kits contained Rutger's tomato seeds that had flown on the Long Duration Exposure Facility (LDEF), as well as seeds that had been stored in a climate controlled warehouse for the same time period. Preliminary data indicates the germination rate for space exposed seeds was 73.8 percent while Earth based seeds germinated at a rate of 70.3 percent. Tests conducted within the first six months after retrieval indicated space exposed seeds germinated in an average of 8.0 days, while Earth based seeds' average germination time was 8.3 days. Some mutations (assumed to be radiation induced) include plants that added a leaf instead of the usual flower at the end of the flower frond. Also, fruit produced from a flower with a variegated calyx bore seeds producing albino plants, while fruit from a flower with a green calyx from the same plant bore seeds producing green plants.

Grigsby, Doris K.↗
NASA NTRS1993

The dynamics of hydroponic crops for simulation studies of the CELSS initial reference configurations

During the past several years, the NASA Program in Controlled Ecological Life Support Systems (CELSS) has continued apace with crop research and logistic, technological, and scientific strides. These include the CELSS Test Facility planned for the space station and its prototype Engineering Development Unit, soon to be active at Ames Research Center (as well as the advanced crop growth research chamber at Ames); the large environmental growth chambers and the planned human test bed facility at Johnson Space Center; the NSCORT at Purdue with new candidate crops and diverse research into the CELSS components; the gas exchange data for soy, potatoes, and wheat from Kennedy Space Center (KSC); and the high-precision gas exchange data for wheat from Utah State University (USU). All these developments, taken together, speak to the need for crop modeling as a means to connect the findings of the crop physiologists with the engineers designing the system. A need also exists for crop modeling to analyze and predict the gas exchange data from the various locations to maximize the scientific yield from the experiments. One fruitful approach employs what has been called the 'energy cascade'. Useful as a basis for CELSS crop growth experimental design, the energy cascade as a generic modeling approach for CELSS crops is a featured accomplishment in this report. The energy cascade is a major tool for linking CELSS crop experiments to the system design. The energy cascade presented here can help collaborations between modelers and crop experimenters to develop the most fruitful experiments for pushing the limits of crop productivity. Furthermore, crop models using the energy cascade provide a natural means to compare, feature for feature, the crop growth components between different CELSS experiments, for example, at Utah State University and Kennedy Space Center.

Volk, Tyler↗
NASA NTRS2004

Life in the Fast Lane for Protein Crystallization and X-Ray Crystallography

The common goal for structural genomic centers and consortiums is to decipher as quickly as possible the three-dimensional structures for a multitude of recombinant proteins derived from known genomic sequences. Since X-ray crystallography is the foremost method to acquire atomic resolution for macromolecules, the limiting step is obtaining protein crystals that can be useful of structure determination. High-throughput methods have been developed in recent years to clone, express, purify, crystallize and determine the three-dimensional structure of a protein gene product rapidly using automated devices, commercialized kits and consolidated protocols. However, the average number of protein structures obtained for most structural genomic groups has been very low compared to the total number of proteins purified. As more entire genomic sequences are obtained for different organisms from the three kingdoms of life, only the proteins that can be crystallized and whose structures can be obtained easily are studied. Consequently, an astonishing number of genomic proteins remain unexamined. In the era of high-throughput processes, traditional methods in molecular biology, protein chemistry and crystallization are eclipsed by automation and pipeline practices. The necessity for high rate production of protein crystals and structures has prevented the usage of more intellectual strategies and creative approaches in experimental executions. Fundamental principles and personal experiences in protein chemistry and crystallization are minimally exploited only to obtain "low-hanging fruit" protein structures. We review the practical aspects of today s high-throughput manipulations and discuss the challenges in fast pace protein crystallization and tools for crystallography. Structural genomic pipelines can be improved with information gained from low-throughput tactics that may help us reach the higher-bearing fruits. Examples of recent developments in this area are reported from the efforts of the Southeast Collaboratory for Structural Genomics (SECSG).

Pusey, Marc L.↗
NASA NTRS1994

Isatin as an auxin source favoring floral and vegetative shoot regeneration from calli produced by thin layer explants of tomato pedicel

Thin layer explants taken from the pedicels and peduncles of flowering tomato plants yielded calli with great organogenetic potential. Of the 15 cultivars tested, 7 regenerated roots, shoots and eventually entire fruit-bearing plants. Calli grown on modified Murashige-Skoog medium responded to varied auxins and cytokinins with different morphogenetic patterns. Thus, naphthaleneacetic acid yielded root-producing calli, while the auxin precursor isatin (indole 2,3-dione) caused the production of calli with vegetative and floral shoots, rarely yielding roots. This may be related to isatin's slow, steady conversion to an active auxin (Plant Physiol 41:1485-1488, 1966) in contrast with naphthaleneacetic acid's immediate presentation of a high level of active auxin. The highest incidence of vegetative shoot (100%) and flower (50%) formation was obtained with 10 micromoles isatin and 3 micromoles zeatin. A few of the flowers developed into ripe fruits. The high frequency of induction of vegetative shoots and flowers before roots with isatin suggests its utility in micropropagation from plant tissue cultures.

NASA Discipline Life Support Systems↗
NASA NTRS2004

Ethylene production throughout growth and development of plants

Ethylene production by 10 or 20 m2 stands of wheat, soybean, lettuce, potato, and tomato was monitored throughout growth and development in an atmospherically closed plant chamber. Chamber ethylene levels varied among species and rose during periods of canopy expansion and rapid growth for all species. Following this, ethylene levels either declined during seed fill and maturation for wheat and soybean, or remained relatively constant for potato and tomato (during flowering and early fruit development). Lettuce plants were harvested during rapid growth and peak ethylene production. Chamber ethylene levels increased rapidly during tomato ripening, reaching concentrations about 10 times that measured during vegetative growth. The highest ethylene production rates during vegetative growth ranged from 1.6 to 2.5 nmol m-2 d-1 during rapid growth of lettuce and wheat stands, or about 0.3 to 0.5 nmol g-1 fresh weight per hour. Estimates of stand ethylene production during tomato ripening showed that rates reached 43 nmol m-2 d-1 in one study and 93 nmol m-2 d-1 in a second study with higher lighting, or about 50x that of the rate during vegetative growth of tomato. In a related test with potato, the photoperiod was extended from 12 to 24 hours (continuous light) at 58 days after planting (to increase tuber yield), but this change in the environment caused a sharp increase in ethylene production from the basal rate of 0.4 to 6.2 nmol m-2 d-1. Following this, the photoperiod was changed back to 12 h at 61 days and ethylene levels decreased. The results suggest three separate categories of ethylene production were observed with whole stands of plants: 1) production during rapid vegetative growth, 2) production during climacteric fruit ripening, and 3) production from environmental stress.

NASA Discipline Life Support Systems↗
NASA NTRS2005

Life in the fast lane for protein crystallization and X-ray crystallography

The common goal for structural genomic centers and consortiums is to decipher as quickly as possible the three-dimensional structures for a multitude of recombinant proteins derived from known genomic sequences. Since X-ray crystallography is the foremost method to acquire atomic resolution for macromolecules, the limiting step is obtaining protein crystals that can be useful of structure determination. High-throughput methods have been developed in recent years to clone, express, purify, crystallize and determine the three-dimensional structure of a protein gene product rapidly using automated devices, commercialized kits and consolidated protocols. However, the average number of protein structures obtained for most structural genomic groups has been very low compared to the total number of proteins purified. As more entire genomic sequences are obtained for different organisms from the three kingdoms of life, only the proteins that can be crystallized and whose structures can be obtained easily are studied. Consequently, an astonishing number of genomic proteins remain unexamined. In the era of high-throughput processes, traditional methods in molecular biology, protein chemistry and crystallization are eclipsed by automation and pipeline practices. The necessity for high-rate production of protein crystals and structures has prevented the usage of more intellectual strategies and creative approaches in experimental executions. Fundamental principles and personal experiences in protein chemistry and crystallization are minimally exploited only to obtain "low-hanging fruit" protein structures. We review the practical aspects of today's high-throughput manipulations and discuss the challenges in fast pace protein crystallization and tools for crystallography. Structural genomic pipelines can be improved with information gained from low-throughput tactics that may help us reach the higher-bearing fruits. Examples of recent developments in this area are reported from the efforts of the Southeast Collaboratory for Structural Genomics (SECSG).

Review↗
NASA NTRS2005

Washing Away the Worries About Germs

Fresh fruits and vegetables have been in demand by orbiting astronauts since the early days of the Space Shuttle. As one can imagine, however, oranges, onions, tomatoes, garlic, and other fresh items can provide a cornucopia of smells in a closed environment such as the Space Shuttle or the International Space Station (ISS), especially when they begin to perish. It does not help that they are loaded onto the Space Shuttle up to 24 hours in advance of a launch, and that the on-orbit shelf life is just 2 to 3 days for most, due to a lack of refrigeration. While such produce adds significant variety to astronauts diets and increases their morale, the odor that emanates from it as it ages can cause nausea. One of the last things astronauts need is associating this healthy fare with feelings of nausea. NASA is currently investigating the use of a commercial sanitation product it helped develop with private industry to thoroughly cleanse and, thus, increase the shelf life of fruits and vegetables being sent into space. Meanwhile, this product is ripe for the picking for consumers looking to do the same, and more, on Earth.

Source record↗