Membrane Proteins Have Distinct Fast Internal Motion and Residual Conformational Entropy
Explore the source record for details and available documents.
99 GENERAL AND MISCELLANEOUS↗
SEARCH · Search NASA
Results for “Helicity distribution functions”
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.
Statistical Mechanics of Turbulent Dynamos
Incompressible magnetohydrodynamic (MHD) turbulence and magnetic dynamos, which occur in magnetofluids with large fluid and magnetic Reynolds numbers, will be discussed. When Reynolds numbers are large and energy decays slowly, the distribution of energy with respect to length scale becomes quasi-stationary and MHD turbulence can be described statistically. In the limit of infinite Reynolds numbers, viscosity and resistivity become zero and if these values are used in the MHD equations ab initio, a model system called ideal MHD turbulence results. This model system is typically confined in simple geometries with some form of homogeneous boundary conditions, allowing for velocity and magnetic field to be represented by orthogonal function expansions. One advantage to this is that the coefficients of the expansions form a set of nonlinearly interacting variables whose behavior can be described by equilibrium statistical mechanics, i.e., by a canonical ensemble theory based on the global invariants (energy, cross helicity and magnetic helicity) of ideal MHD turbulence. Another advantage is that truncated expansions provide a finite dynamical system whose time evolution can be numerically simulated to test the predictions of the associated statistical mechanics. If ensemble predictions are the same as time averages, then the system is said to be ergodic; if not, the system is nonergodic. Although it had been implicitly assumed in the early days of ideal MHD statistical theory development that these finite dynamical systems were ergodic, numerical simulations provided sufficient evidence that they were, in fact, nonergodic. Specifically, while canonical ensemble theory predicted that expansion coefficients would be (i) zero-mean random variables with (ii) energy that decreased with length scale, it was found that although (ii) was correct, (i) was not and the expected ergodicity was broken. The exact cause of this broken ergodicity was explained, after much investigation, by greatly extending the statistical theory of ideal MHD turbulence. The mathematical details of broken ergodicity, in fact, give a quantitative explanation of how coherent structure, dynamic alignment and force-free states appear in turbulent magnetofluids. The relevance of these ideal results to real MHD turbulence occurs because broken ergodicity is most manifest in the ideal case at the largest length scales and it is in these largest scales that a real magnetofluid has the least dissipation, i.e., most closely approaches the behavior of an ideal magnetofluid. Furthermore, the effects grow stronger when cross and magnetic helicities grow large with respect to energy, and this is exactly what occurs with time in a real magnetofluid, where it is called selective decay. The relevance of these results found in ideal MHD turbulence theory to the real world is that they provide at least a qualitative explanation of why confined turbulent magnetofluids, such as the liquid iron that fills the Earth's outer core, produce stationary, large-scale magnetic fields, i.e., the geomagnetic field. These results should also apply to other planets as well as to plasma confinement devices on Earth and in space, and the effects should be manifest if Reynolds numbers are high enough and there is enough time for stationarity to occur, at least approximately. In the presentation, details will be given for both theoretical and numerical results, and references will be provided.
Shebalin, John V.↗
MHD Turbulence and Magnetic Dynamos
Incompressible magnetohydrodynamic (MHD) turbulence and magnetic dynamos, which occur in magnetofluids with large fluid and magnetic Reynolds numbers, will be discussed. When Reynolds numbers are large and energy decays slowly, the distribution of energy with respect to length scale becomes quasi-stationary and MHD turbulence can be described statistically. In the limit of infinite Reynolds numbers, viscosity and resistivity become zero and if these values are used in the MHD equations ab initio, a model system called ideal MHD turbulence results. This model system is typically confined in simple geometries with some form of homogeneous boundary conditions, allowing for velocity and magnetic field to be represented by orthogonal function expansions. One advantage to this is that the coefficients of the expansions form a set of nonlinearly interacting variables whose behavior can be described by equilibrium statistical mechanics, i.e., by a canonical ensemble theory based on the global invariants (energy, cross helicity and magnetic helicity) of ideal MHD turbulence. Another advantage is that truncated expansions provide a finite dynamical system whose time evolution can be numerically simulated to test the predictions of the associated statistical mechanics. If ensemble predictions are the same as time averages, then the system is said to be ergodic; if not, the system is nonergodic. Although it had been implicitly assumed in the early days of ideal MHD statistical theory development that these finite dynamical systems were ergodic, numerical simulations provided sufficient evidence that they were, in fact, nonergodic. Specifically, while canonical ensemble theory predicted that expansion coefficients would be (i) zero-mean random variables with (ii) energy that decreased with length scale, it was found that although (ii) was correct, (i) was not and the expected ergodicity was broken. The exact cause of this broken ergodicity was explained, after much investigation, by greatly extending the statistical theory of ideal MHD turbulence. The mathematical details of broken ergodicity, in fact, give a quantitative explanation of how coherent structure, dynamic alignment and force-free states appear in turbulent magnetofluids. The relevance of these ideal results to real MHD turbulence occurs because broken ergodicity is most manifest in the ideal case at the largest length scales and it is in these largest scales that a real magnetofluid has the least dissipation, i.e., most closely approaches the behavior of an ideal magnetofluid. Furthermore, the effects grow stronger when cross and magnetic helicities grow large with respect to energy, and this is exactly what occurs with time in a real magnetofluid, where it is called selective decay. The relevance of these results found in ideal MHD turbulence theory to the real world is that they provide at least a qualitative explanation of why confined turbulent magnetofluids, such as the liquid iron that fills the Earth's outer core, produce stationary, large-scale magnetic fields, i.e., the geomagnetic field. These results should also apply to other planets as well as to plasma confinement devices on Earth and in space, and the effects should be manifest if Reynolds numbers are high enough and there is enough time for stationarity to occur, at least approximately. In the presentation, details will be given for both theoretical and numerical results, and references will be provided.
Shebalin, John V↗
Polarized fragmenting jet functions in inclusive and exclusive jet production
Abstract In this work, we present a complete theoretical framework for analyzing the distribution of polarized hadrons within jets, with and without measuring the transverse momentum relative to the standard jet axis. Using soft-collinear effective theory (SCET), we derive the factorization and provide the theoretical calculation of both semi-inclusive and exclusive fragmenting jet functions (FJFs) under longitudinal and transverse polarization. With the polarized FJFs, one gains access to a variety of new observables that can be used for extracting both collinear and transverse momentum dependent parton distribution functions (PDFs) and fragmentation functions (FFs). As examples, we provide numerical results for the spin asymmetry$$ {A}_{TU,T}^{\cos \left({\phi}_S-{\hat{\phi}}_{S_h}\right)} $$ A TU , T cos ϕ S − ϕ ̂ S h from polarized semi-inclusive hadron-in-jet production in polarizedppcollisions at RHIC kinematics, where a transversely polarized quark would lead to the transverse spin of the final-state hadron inside the jet and is thus sensitive to the transversity fragmentation functions. Similarly, another spin asymmetry,$$ {A}_{TU,L}^{\cos \left({\phi}_q-{\phi}_S\right)} $$ A TU , L cos ϕ q − ϕ S from polarized exclusive hadron-in-jet production in polarizedepcollisions at EIC kinematics would allow us to access the helicity fragmentation functions. These observables demonstrate promising potential in investigating transverse momentum dependent PDFs and FFs and are worthwhile for further measurements.
Physics↗
Quantifying the Long‐Range Coupling of Electronic Properties in Proteins with ab initio Molecular Dynamics**
Abstract The delicate interplay of covalent and non‐covalent interactions in proteins is inherently quantum mechanical and highly dynamic in nature. To directly interrogate the evolving nature of the electronic structure of proteins, we carry out 100‐ps‐scale ab initio molecular dynamics simulations of three representative small proteins with range‐separated hybrid density functional theory. We quantify the nature and length‐scale of the coupling of residue‐specific charge probability distributions in these proteins. While some nonpolar residues exhibit expectedly narrow charge distributions, most polar and charged residues exhibit broad, multimodal distributions. Even for nonpolar residues, we observe sequence‐specific deviations corresponding to charge accumulation or depletion that would be challenging to capture in a fixed charge force field. We quantify the effect of residue‐residue interactions on charge distributions first with linear cross‐correlations. We then show how additional insight can be gained from evaluating the mutual information of charge distributions. We show that a significant number of residues couple most strongly with residues that are distant in both sequence and space over a range of secondary structures including α‐helical, β‐sheet, disulfide bridging, and lasso motifs. The mutual information analysis is necessary to capture coupling between some polar and charged residues that would be otherwise missed.
Yang, Zhongyue↗
Computational Design of Miniproteins as SARS-CoV-2 Therapeutic Inhibitors
A rational therapeutic strategy is urgently needed for combating SARS-CoV-2 infection. Viral infection initiates when the SARS-CoV-2 receptor-binding domain (RBD) binds to the ACE2 receptor, and thus, inhibiting RBD is a promising therapeutic for blocking viral entry. In this study, the structure of lead antiviral candidate binder (LCB1), which has three alpha-helices (H1, H2, and H3), is used as a template to design and simulate several miniprotein RBD inhibitors. LCB1 undergoes two modifications: structural modification by truncation of the H3 to reduce its size, followed by single and double amino acid substitutions to enhance its binding with RBD. We use molecular dynamics (MD) simulations supported by ab initio density functional theory (DFT) calculations. Complete binding profiles of all miniproteins with RBD have been determined. The MD investigations reveal that the H3 truncation results in a small inhibitor with a -1.5 kcal/mol tighter binding to RBD than original LCB1, while the best miniprotein with higher binding affinity involves D17R or E11V + D17R mutation. DFT calculations provide atomic-scale details on the role of hydrogen bonding and partial charge distribution in stabilizing the minibinder:RBD complex. This study provides insights into general principles for designing potential therapeutics for SARS-CoV-2.
60 APPLIED LIFE SCIENCES↗
Scaling of magnetic dissipation and particle acceleration in ABC fields
Using particle-in-cell numerical simulations with electron–positron pair plasma, we study how the efficiencies of magnetic dissipation and particle acceleration scale with the initial coherence length λ 0 in relation to the system size L of the two-dimensional ‘Arnold–Beltrami–Childress’ (ABC) magnetic field configurations. Topological constraints on the distribution of magnetic helicity in two-dimensional systems, identified earlier in relativistic force-free simulations, that prevent the high-(L/λ 0 ) configurations from reaching the Taylor state, limit the magnetic dissipation efficiency to about ϵ diss ≃60% . Here we find that the peak growth time scale of the electric energy τ E,peak scales with the characteristic value of initial Alfvén velocity β A,ini like τ E,peak ∝(λ 0 /L)β$^{–3}_{A,ini}$ . The particle energy change is decomposed into non-thermal and thermal parts, with non-thermal energy gain dominant only for high initial magnetisation. The most robust description of the non-thermal high-energy part of the particle distribution is that the power-law index is a linear function of the initial magnetic energy fraction.
70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
Measurements of the $W$ boson rapidity, helicity, double-differential cross sections, and charge asymmetry in $pp$ collisions at $\sqrt {s}$ = 13 TeV
The differential cross section and charge asymmetry for inclusive W boson production at s=13 TeV is measured for the two transverse polarization states as a function of the W boson absolute rapidity. The measurement uses events in which a W boson decays to a neutrino and either a muon or an electron. The data sample of proton-proton collisions recorded with the CMS detector at the LHC in 2016 corresponds to an integrated luminosity of 35.9 fb-1. The differential cross section and its value normalized to the total inclusive W boson production cross section are measured over the rapidity range |yW|<2.5. In addition to the total fiducial cross section, the W boson double-differential cross section, d2σ/dpTℓd|ηℓ|, and the charge asymmetry are measured as functions of the charged lepton transverse momentum and pseudorapidity. The precision of these measurements is used to constrain the parton distribution functions of the proton using the next-to-leading order NNPDF3.0 set.
72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
Development of a Systematic and Extensible Force Field for Peptoids (STEPs)
Peptoids (N-substituted glycines) are a class of biomimetic polymers that have attracted significant attention due to their accessible synthesis and enzymatic and thermal stability relative to their naturally occurring counterparts (polypeptides). While these polymers provide the promise of more robust functional materials via hierarchical approaches, they present a new challenge for computational structure prediction for material design. The reliability of calculations hinges on the accuracy of interactions represented in the force field used to model peptoids. For proteins, structure prediction based on sequence and de novo design has made dramatic progress in recent years; however, these models are not readily transferable for peptoids. Current efforts to develop and implement peptoid-specific force fields are spread out, leading to replicated efforts and a fragmented collection of parameterized sidechains. Here, we developed a peptoid-specific force field containing 70 different side chains, using GAFF2 as starting point. The new model is validated based on the generation of Ramachandran-like plots from DFT optimization compared against force field reproduced potential energy and free energy surfaces as well as the reproduction of equilibrium cis/trans values for some residues experimentally known to form helical structures. In conclusion, equilibrium cis/trans distributions (Kct) are estimated for all parameterized residues to identify which residues have an intrinsic propensity for cis or trans states in the monomeric state.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Measurements of Beam Spin Asymmetries in p+p0 and p´p0 Dihadron Production at CLAS12
Semi-Inclusive Deep Inelastic Scattering (SIDIS) is a powerful experimental tool for studying the internal structure and dynamics of the proton, revealing how quarks and gluons are distributed and interact within it. SIDIS describes a process where an elec tron scatters off one of the constituent quarks within the proton, causing it to undergo hadronization, creating multiple hadrons in the final state. Through factorization, the full process can be split into probabilistic components: one which describes the internal structure of the proton using Parton Distribution Functions (PDFs), and another which describes the hadronization process using Fragmentation Functions (FFs). These functions are non-perturbative quantities of Quantum Chromodynamics (QCD), meaning they cannot be calculated directly from first principles and must instead be extracted from experimental measurements. Acommon approach for accessing PDFs and FFs using SIDIS is to measure asymmetries. In this context, asymmetries correspond to subtle differences in the angular distribution of outgoing particles that arise when the spin orientation of the incoming beam or target is reversed. Because many of these effects only appear when spin is involved, they isolate specific, nuanced properties of the proton’s spin-structure that are otherwise hidden in spin averaged measurements. In practice, they show up as specific azimuthal modulations (e.g., sin ¿R, sin(¿h ´ ¿R)), whose amplitudes isolate convolutions of PDFs and FFs at leading and subleading twist. Non-zero asymmetries of these angular distributions can be traced back to unique combinations of PDFs and FFs, offering a way to probe them directly. In this work, we measure SIDIS by analyzing high energy electron-proton scattering events using the CLAS12 detector at Jefferson Lab. This study focuses on subset of SIDIS referred to as dihadron SIDIS, where pairs of hadrons — here p+p0 and p´p0 — are observed. We analyzed these dihadrons using detector data collected during Fall 2018 and Spring 2019, where longitudinally polarized electrons from the CEBAF accelerator were incident on a liquid hydrogen target. A photon classifier using a Gradient Boosted Trees (GBTs) architecture was trained using Monte Carlo simulations to reduce the amount of iv false combinatorial background p0’s. When deployed on experimental data, the model in creases our dihadron statistics by up to five-fold compared to previous CLAS12 p0 analyses. This work reports the first measurements of beam spin asymmetries for p+p0 and p´p0 dihadron production in SIDIS. The measured asymmetries offer new insights to the spin-dependent structure and dynamics within the proton, as well as the spin-dependent properties of quark fragmentation. Non-zero twist-3 sin¿R amplitudes are observed, pro viding sensitivity to the subleading twist PDF e(x). The PDF e(x) encodes quark-gluon correlations within the proton — a property that is otherwise inaccessible at leading twist. Additionally, this work measured significant twist-2 modulations carried by sin(¿h ´ ¿R) and sin(2¿h ´2¿R), providing experimental access to the helicity dihadron fragmentation function (DiFF) GK 1 . Because there is no equivalent quark helicity-dependent FF in single pion SIDIS, the DiFF GK 1 offers a unique lens into novel spin-dependent fragmentation. For instance, the twist-2 modulations observed in this study are enhanced by vector mesons created during fragmentation — a behavior predicted by phenomenological models. This study broadens our understanding of dihadron fragmentation, revealing new details about the flavor and charge dependence of hadronization.
Matousek, Gregory [Duke Univ., Durham, NC (United ↗
Moments of nucleon isovector structure functions in 2+1+1-flavor QCD
We present results on the isovector momentum fraction, $\langle x \rangle_{u–d}$ , helicity moment, $\langle x \rangle_{Δ u–Δd}$ , and the transversity moment, $\langle x \rangle_{δu–δd}$, of the nucleon obtained using nine ensembles of gauge configurations generated by the MILC Collaboration using 2 + 1 + 1 -flavors of dynamical highly improved staggered quarks. The correlation functions are calculated using the Wilson-Clover action, and the renormalization of the three operators is carried out nonperturbatively on the lattice in the RI'–MOM scheme. The data have been collected at lattice spacings a ≈ 0.15 , 0.12, 0.09, and 0.06 fm and $M_π$ ≈ 310 , 220, and 135 MeV, which are used to obtain the physical values using a simultaneous chiral-continuum-finite-volume fit. The final results, in the $\overline{\text{MS}}$ scheme at 2 GeV, are $\langle$ x $\rangle$ u – d = 0.173 ( 14 ) ( 07 ) , $\langle x \rangle_{Δu–Δd}$ = 0.213 ( 15 ) ( 22 ) , and $\langle x \rangle_{δu–δd}$ = 0.208 ( 19 ) ( 24 ) , where the first error is the overall analysis uncertainty and the second is an additional systematic uncertainty due to possible residual excited-state contributions. These results are consistent with other recent lattice calculations and phenomenological global fit values.
72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
Dependence of Solar Wind Proton Temperature on the Polarization Properties of Alfvénic Fluctuations at Ion-kinetic Scales
In this work, we use fluctuating magnetic helicity to investigate the polarization properties of Alfvénic fluctuations at ion-kinetic scales in the solar wind as a function of β p , the ratio of proton thermal pressure to magnetic pressure, and θ vB , the angle between the proton flow and local mean magnetic field, B 0 . Using almost 15 yr of Wind observations, we separate the contributions to helicity from fluctuations with wavevectors, k, quasi-parallel and oblique to B 0 , finding that the helicity of Alfvénic fluctuations is consistent with predictions from linear Vlasov theory. This result suggests that the nonlinear turbulent fluctuations at these scales share at least some polarization properties with Alfvén waves. Furthermore, we also investigate the dependence of proton temperature in the β p –θ vB plane to probe for possible signatures of turbulent dissipation, finding that it correlates with θ vB . The proton temperature parallel to B 0 is higher in the parameter space where we measure the helicity of right-handed Alfvénic fluctuations, and the temperature perpendicular to B 0 is higher where we measure left-handed fluctuations. This finding is inconsistent with the general assumption that by sampling different θ vB in the solar wind we can analyze the dependence of the turbulence distribution on θ kB , the angle between k and B 0 . After ruling out both instrumental and expansion effects, we conclude that our results provide new evidence for the importance of local kinetic processes that depend on θ vB in determining proton temperature in the solar wind.
79 ASTRONOMY AND ASTROPHYSICS↗
Study of γ γ → γ ψ ( 2 S ) at Belle
Using 980 fb -1 of data at and around the Υ(nS)(n = 1, 2, 3, 4, 5) resonances collected with the Belle detector at the KEKB asymmetric-energy e+e- collider, the two-photon process γγ → γψ(2S) is studied from the threshold to 4.2 GeV for the first time. Two structures are seen in the invariant mass distribution of γψ(2S): one at M R 1 = 3922.4 ± 6.5 ± 2.0 MeV/c 2 with a width of Γ R 1 = 22 ± 17 ± 4 MeV, and another at M R 2 = 4014.3 ± 4.0 ± 1.5 MeV/c 2 with a width of Γ R 2 = 4 ± 11 ± 6 MeV; the signals are parametrized with the incoherent sum of two Breit- Wigner functions. The first structure is consistent with the X(3915) or the χ c2 (3930), and the local statistical significance is determined to be 3.1σ with the systematic uncertainties included. The second matches none of the known charmonium or charmonium like states, and its global significance is determined to be 2.8σ including the look-elsewhere effect. The production rates are Γ γγ B(R 1 → γψ(2S)) = 9.8 ± 3.6 ± 1.2 eV assuming (J PC , |λ|) = (0 ++ , 0) or 2.0 ± 0.7 ± 0.2 eV with (2 ++ , 2) for the first structure and Γ γγ B(R 2 → γψ(2S)) = 6.2 ± 2.2 ± 0.8 eV with (0 ++ , 0) or 1.2 ± 0.4 ± 0.2 eV with (2 ++ , 2) for the second one. Furthermore, the first errors are statistical and the second systematic, and λ is the helicity.
46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
Spontaneous Chirality Flipping in an Orthogonal Spin-Charge Ordered Topological Magnet
The asymmetric distribution of chiral objects with opposite chirality is of great fundamental interest ranging from molecular biology to particle physics. In quantum materials, chiral states can build on inversion-symmetry-breaking lattice structures or emerge from spontaneous magnetic ordering induced by competing interactions. Although the handedness of a chiral state can be changed through external fields, a spontaneous chirality flipping has yet to be discovered. We present experimental evidence of chirality flipping via changing temperature in a topological magnet EuAl 4 , which features orthogonal spin density waves (SDW) and charge density waves (CDW). Using circular dichroism of Bragg peaks in the resonant magnetic x-ray scattering, we find that the chirality of the helical SDW flips through a first-order phase transition with modified SDW wavelength. Intriguingly, we observe that the CDW couples strongly with the SDW and displays a rare commensurate-to-incommensurate transition at the chirality flipping temperature. Combining with first-principles calculations and angle-resolved photoemission spectroscopy, our results support a Fermi surface origin of the helical SDW with intertwined spin, charge, and lattice degrees of freedom in EuAl 4 . Our results reveal an unprecedented spontaneous chirality flipping and lay the groundwork for a new functional manipulation of chirality through momentum-dependent spin-charge-lattice interactions. Published by the American Physical Society 2024
3-dimensional systems↗
Measurements and Computations of Natural Transition on the NASA Juncture-Flow Model with a Symmetric Wing
Experiments were performed in the 14- by 22-Foot Subsonic Tunnel to assess natural transition on the symmetric-airfoil wings of the NASA Juncture-Flow Model. Infrared thermography was used to visualize the heating on the upper surface of both wings of the full-span model, and on the fuselage, for angles of incidence ranging from -10° to 10° at a fixed Reynolds number of 2.4E6 based on the chord length at the wing planform break. The fuselage boundary layer transitioned well upstream of the wing-root leading edge for all conditions. Transition fronts were identified by a steep rise in the surface temperature, and the transition coordinates were transformed from an image-based to a body-fixed system. Additionally, the state of the boundary layer was estimated at pressure ports distributed on the wings through observation of the pressure coefficient as a function of the angle of incidence. For increasing angles of incidence, the transition front was observed to advance upstream, in a mostly spanwise-uniform fashion, from near midchord at α = 0°; however, for increasingly negative angles of incidence, the transition front first receded and then advanced in a nonuniform jagged manner that is typically observed with stationary crossflow. The transition wedges first appeared inboard of the wing break and then spread outboard to near the tip by α = -6°. The upstream shift in transition at positive angles of incidence and the outboard progression of crossflow-dominated transition at increasingly negative angles of incidence are consistent with trends identified in a computational assessment of the boundary-layer transition based on both linear stability analysis and Reynolds-averaged-Navier-Stokes-based transition models. The stability results obtained from the Langley Stability and Transition Analysis Code were used to recalibrate a dual N-factor criterion, which allowed for the prediction of transition fronts that showed excellent agreement with the experiment. The Reynolds-averaged-Navier-Stokes-based models, from the NASA OVERFLOW 2.3 solver, that accounted for the crossflow instability showed mixed results in comparison with the experiment, with the helicity-based Langtry-Menter model performing the best. The experimental data, particularly the cases involving strong influence from both Tollmien-Schlichting and crossflow instabilities, will be valuable for the continued validation and improvement of transition models.
Boundary layer transition↗
Measurements and Computations of Natural Transition on the NASA Juncture-Flow Model with a Symmetric Wing
Experiments were performed in the 14- by 22-Foot Subsonic Tunnel to assess natural transition on the symmetric-airfoil wings of the NASA Juncture-Flow Model. Infrared thermography was used to visualize the heating on the upper surface of both wings of the full-span model, and on the fuselage, for angles of incidence ranging from -10° to 10° at a fixed Reynolds number of 2.4E6 based on the chord length at the wing planform break. The fuselage boundary layer transitioned well upstream of the wing-root leading edge for all conditions. Transition fronts were identified by a steep rise in the surface temperature, and the transition coordinates were transformed from an image-based to a body-fixed system. Additionally, the state of the boundary layer was estimated at pressure ports distributed on the wings through observation of the pressure coefficient as a function of the angle of incidence. For increasing angles of incidence, the transition front was observed to advance upstream, in a mostly spanwise-uniform fashion, from near midchord at α = 0°; however, for increasingly negative angles of incidence, the transition front first receded and then advanced in a nonuniform jagged manner that is typically observed with stationary crossflow. The transition wedges first appeared inboard of the wing break and then spread outboard to near the tip by α = -6°. The upstream shift in transition at positive angles of incidence and the outboard progression of crossflow-dominated transition at increasingly negative angles of incidence are consistent with trends identified in a computational assessment of the boundary-layer transition based on both linear stability analysis and Reynolds-averaged-Navier-Stokes-based transition models. The stability results obtained from the Langley Stability and Transition Analysis Code were used to recalibrate a dual N-factor criterion, which allowed for the prediction of transition fronts that showed excellent agreement with the experiment. The Reynolds-averaged-Navier-Stokes-based models, from the NASA OVERFLOW 2.3 solver, that accounted for the crossflow instability showed mixed results in comparison with the experiment, with the helicity-based Langtry-Menter model performing the best. The experimental data, particularly the cases involving strong influence from both Tollmien-Schlichting and crossflow instabilities, will be valuable for the continued validation and improvement of transition models.
boundary layer transition↗
Measurements and Computations of Natural Transition on the NASA Juncture-Flow Model with a Symmetric Wing
Experiments were performed in the 14- by 22-Foot Subsonic Tunnel to assess natural transition on the symmetric-airfoil wings of the NASA Juncture-Flow Model. Infrared thermography was used to visualize the heating on the upper surface of both wings of the full-span model, and on the fuselage, for angles of incidence ranging from -10° to 10° at a fixed Reynolds number of 2.4E6 based on the chord length at the wing planform break. The fuselage boundary layer transitioned well upstream of the wing-root leading edge for all conditions. Transition fronts were identified by a steep rise in the surface temperature, and the transition coordinates were transformed from an image-based to a body-fixed system. Additionally, the state of the boundary layer was estimated at pressure ports distributed on the wings through observation of the pressure coefficient as a function of the angle of incidence. For increasing angles of incidence, the transition front was observed to advance upstream, in a mostly spanwise-uniform fashion, from near midchord at α = 0°; however, for increasingly negative angles of incidence, the transition front first receded and then advanced in a nonuniform jagged manner that is typically observed with stationary crossflow. The transition wedges first appeared inboard of the wing break and then spread outboard to near the tip by α = -6°. The upstream shift in transition at positive angles of incidence and the outboard progression of crossflow-dominated transition at increasingly negative angles of incidence are consistent with trends identified in a computational assessment of the boundary-layer transition based on both linear stability analysis and Reynolds-averaged-Navier-Stokes-based transition models. The stability results obtained from the Langley Stability and Transition Analysis Code were used to recalibrate a dual N-factor criterion, which allowed for the prediction of transition fronts that showed excellent agreement with the experiment. The Reynolds-averaged-Navier-Stokes-based models, from the NASA OVERFLOW 2.3 solver, that accounted for the crossflow instability showed mixed results in comparison with the experiment, with the helicity-based Langtry-Menter model performing the best. The experimental data, particularly the cases involving strong influence from both Tollmien-Schlichting and crossflow instabilities, will be valuable for the continued validation and improvement of transition models.
boundary layer transition↗
Apolipoprotein A-I modulates HDL particle size in the absence of apolipoprotein A-II
Human high-density lipoproteins (HDLs) are a complex mixture of structurally related nanoparticles that perform distinct physiological functions. We previously showed that human HDL containing apolipoprotein A-I (APOA1) but not apolipoprotein A-II (APOA2), designated LpA-I, is composed primarily of two discretely sized populations. Here, we isolated these particles directly from human plasma by antibody affinity chromatography, separated them by high-resolution size-exclusion chromatography and performed a deep molecular characterization of each species. The large and small LpA-I populations were spherical with mean diameters of 109 Å and 91 Å, respectively. Unexpectedly, isotope dilution MS/MS with [ 15 N]-APOA1 in concert with quantitation of particle concentration by calibrated ion mobility analysis demonstrated that the large particles contained fewer APOA1 molecules than the small particles; the stoichiometries were 3.0 and 3.7 molecules of APOA1 per particle, respectively. MS/MS experiments showed that the protein cargo of large LpA-I particles was more diverse. Human HDL and isolated particles containing both APOA1 and APOA2 exhibit a much wider range and variation of particle sizes than LpA-I, indicating that APOA2 is likely the major contributor to HDL size heterogeneity. We propose a ratchet model based on the trefoil structure of APOA1 whereby the helical cage maintaining particle structure has two “settings”—large and small—that accounts for these findings. This understanding of the determinants of HDL particle size and protein cargo distribution serves as a basis for determining the roles of HDL subpopulations in metabolism and disease states.
59 BASIC BIOLOGICAL SCIENCES↗