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MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration

Specialized or secondary metabolites are small molecules of biological origin, often showing potent biological activities with applications in agriculture, engineering and medicine. Usually, the biosynthesis of these natural products is governed by sets of co-regulated and physically clustered genes known as biosynthetic gene clusters (BGCs). To share information about BGCs in a standardized and machine-readable way, the Minimum Information about a Biosynthetic Gene cluster (MIBiG) data standard and repository was initiated in 2015. Since its conception, MIBiG has been regularly updated to expand data coverage and remain up to date with innovations in natural product research. Here, we describe MIBiG version 4.0, an extensive update to the data repository and the underlying data standard. In a massive community annotation effort, 267 contributors performed 8304 edits, creating 557 new entries and modifying 590 existing entries, resulting in a new total of 3059 curated entries in MIBiG. Particular attention was paid to ensuring high data quality, with automated data validation using a newly developed custom submission portal prototype, paired with a novel peer-reviewing model. MIBiG 4.0 also takes steps towards a rolling release model and a broader involvement of the scientific community. MIBiG 4.0 is accessible online at https://mibig.secondarymetabolites.org/.

59 BASIC BIOLOGICAL SCIENCES

Peter Higgs (1929–2024)

Peter Ware Higgs, a particle physics icon, died on 8 April at the age of 94. Higgs illuminated the path to understanding how exact symmetries obeyed by the laws of nature might be masked by an asymmetric ground state that is an outcome of symmetrical laws. In 1964, he posited that a field filling all of space could be the agent that hides the underlying symmetries of the fundamental interactions. Additionally, when excited, the field reveals itself as a massive unstable particle. In the context of a joint theory of electromagnetism and the weak interaction, that particle—popularly called the Higgs boson—emerged as the keystone of the standard model of particle physics. The decades-long search for the boson engaged the passion of thousands of scientists and engineers and stirred the curiosity of the public the world over.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS

Development of learning objectives to support undergraduate virology curriculum guidelines

It has become increasingly important for microbiology educators to help students learn critical concepts of the discipline. This is particularly true in virology, where current challenges include increasing rates of vaccine hesitancy, misinformation about the COVID-19 pandemic, and controversy surrounding research on pathogens with pandemic potential. Having students learn virology can attract more people to the field and increase the number of people who can engage in meaningful discourse about issues relating to the discipline. However, the limited number of virologists who teach undergraduates, combined with the fact that many institutions lack stand-alone virology courses, results in virology often being taught as a limited number of lectures within an undergraduate microbiology course (if it is covered at all), which may or may not be taught by an individual trained as a virologist. To provide a framework to teach virology to undergraduate students, a team of virology educators, with support from the American Society for Virology (ASV), developed curriculum guidelines for use in a stand-alone undergraduate virology course or a virology section within another course. These guidelines are available at the ASV website (https://asv.org/curriculum-guidelines/). To assist educators in implementing these guidelines, we created examples of measurable learning objectives. This perspective provides details about the virology curriculum guidelines and learning objectives and accompanies the perspective by Boury et al. in this issue of the Journal of Microbiology & Biology Education about the recent revision of the microbiology curriculum guidelines overseen by the American Society for Microbiology.

59 BASIC BIOLOGICAL SCIENCES

Deployment Gamma Instruments Laboratory Exercise

The instructional goals for this session are to provide participants with a thorough understanding of gamma-ray spectroscopy techniques and to familiarize them with the operation and performance of the NCV-owned gamma-ray instruments.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND

Cyber-Informed Engineering Workbook: CIE Hands-On Training

This workbook presents a case study of a hypothetical project to support discussion and application of the principles for Cyber-Informed Engineering as a part of a facilitated workshop. Though this scenario draws from a selection of real-world case studies, it is fictional. Workshop participants are encouraged to use the workbook to capture insights and lessons learned.

42 ENGINEERING

Fall Protection Introduction [Slides]

Safety Briefing: Emergency evacuation or shelter in place, Location of AED and first aid, Temporary maintenance/repair conditions

96 KNOWLEDGE MANAGEMENT AND PRESERVATION

Mechanical Material Handling Coordinator (43321) [Slides]

Upon successful completion of this course, participants will be able to assess a load handling activity in order to develop a mechanical materials handling plan following safety guidelines and LANL policies.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION

Course #2430: Hearing Conservation [Slides]

Occupational hearing loss is one of the most common work-related illnesses in the United States (US). According to OSHA, 22 million US workers are exposed to hazardous noise levels at work, and 25% of these workers will develop permanent hearing loss. Hearing loss from noise is slow and painless, and you can have a disability before you notice it. This course presents the hazards associated with workplace noise, the purpose and elements of the Los Alamos National Laboratory (LANL) Hearing Conservation Program (HCP), and controls that are available to reduce your exposure to hazardous levels of noise.

59 BASIC BIOLOGICAL SCIENCES

Cryogen Safety Live #8876

Cryogenics (from the Greek word κρυος, meaning frost or icy cold) is the study of the effects and behavior of materials at very low temperature. This course is designed to provide trainees with an introduction to cryogen use, hazards associated with cryogen systems, cryogen safety components, and the requirements that govern the design and use of cryogen systems at Los Alamos National Laboratory (LANL). The knowledge you gain is intended to help you keep your workplace safe for you and your coworkers.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION

2024 NMDC Ambassador Training Materials [Slides]

The NMDC is a sustainable data discovery platform that promotes open science and shared-ownership across a broad and diverse community of researchers, funders, publishers, societies, and other collaborators. The NMDC aims to enable multi-omic microbiome research to accelerate scientific discovery. The NMDC is a Department of Energy funded program that is a collaboration between 3 National Laboratories: Lawrence Berkeley National Laboratory (LBNL), Los Alamos National Laboratory (LANL), and Pacific Northwest National Laboratory (PNNL).

54 ENVIRONMENTAL SCIENCES

Importance of Hands-on Training within the Nuclear Industry

Almost all work performed within the nuclear industry requires some form of training, regardless of an individual’s education. While many of the hazards that exist in nuclear operations are present in other industries (e.g., industrial safety), nuclear operations have the unique hazards of radiation and inadvertent criticality. Therefore, these topics require additional training for individuals performing hands-on work or accessing those work areas. Many methods are available to train people including lectures (either with an instructor or automated video), reading procedures/policies, hands-on demonstrations, and on-the-job training.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS

Dynamic and Responsive Distributed Energy Resource Education Solutions for Building, Fire, and Safety Department Officials (Final Technical Report)

From April 2021 through March 2024, the Interstate Renewable Energy Council (IREC) led a collaborative project to develop a free online clearinghouse of educational resources about solar photovoltaics (PV), energy storage systems (ESS), electric vehicle supply equipment (EVSE), and grid-interactive efficient building (GEB) technologies. Two websites—the Clean Energy Clearinghouse and CleanEnergyTraining.org—housed over 70 educational resources. Over the course of the three-year project, 154,272 unique visitors accessed the learning materials. Learner feedback was overwhelmingly positive. Even through the end of the project, there was sustained demand for education and communication. A primary innovation of the project was to drive multiple complementary audiences to the same place. Building owners, designers, installation contractors and developers, authorities having jurisdiction (AHJs), and fire service personnel all benefit from a shared understanding of clean energy technologies, including safety and code-related requirements. When considering the impact on the target audience, the project team worked with partners and advisors to inform resource creation and delivery in such a way as to address key motivational factors of the target audience and compel each user to seek additional information on the topic and return to the Clean Energy Clearinghouse website as their central location for more information. Resources were intentionally developed to be concise—five to 15 minutes—and accessible, meaning not overly technical. Providing basic information demystified the technologies and invited the professional to explore additional learning opportunities. Awardee and partner collaboration was key to project success. IREC facilitated collaboration among the other Topic 2 awardees, Southface and New Buildings Institute (NBI). The three awardees shared relevant information gained through discovery and validation questionnaires that informed product development and reduced duplication of effort by coordinating the development of complementary, and not competing, educational resources. Inspired by this collaboration, IREC brought on additional partners even in the final year of the project. Five regional energy efficiency organizations were part of the project, which expanded the connection between efficiency and distributed energy resources. We also included resources on the Clearinghouse that were developed through other federally funded projects, such as the Buildings Energy Efficiency Frontiers & Innovation Technologies (BENEFIT) program. The website was developed with the learner in mind, and not solely the funding source. Feedback from stakeholders throughout the project, and especially in its final year, indicated the need for continued education and facilitated communication among stakeholders to further the safe and widespread adoption of clean energy.

14 SOLAR ENERGY

American Nuclear Society ANS-8 Subcommittee Meeting [Slides]

This presentation details the discussion of agenda topics. Including the minutes from the last meeting and Membership. Additionally covered is ANS-8 and NCSCC ballots, ANS-8 participation report, and ANS-8 New and Old Business.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION

Library of Advanced Materials for Engineering (LAMÉ) 5.20

Accurate and efficient constitutive modeling remains a cornerstone issue for solid mechanics analysis. Over the years, the LAMÉ advanced material model library has grown to address this challenge by implementing models capable of describing material systems spanning soft polymers to stiff ceramics including both isotropic and anisotropic responses. Inelastic behaviors including (visco)plasticity, damage, and fracture have all incorporated for use in various analyses. This multitude of options and flexibility, however, comes at the cost of many capabilities, features, and responses and the ensuing complexity in the resulting implementation. Therefore, to enhance confidence and enable the utilization of the LAMÉ library in application, this effort seeks to document and verify the various models in the LAMÉ library. Specifically, the broader strategy, organization, and interface of the library itself is first presented. The physical theory, numerical implementation, and user guide for a large set of models is then discussed. Importantly, a number of verification tests are performed with each model to not only have confidence in the model itself but also highlight some important response characteristics and features that may be of interest to end-users. Finally, in looking ahead to the future, approaches to add material models to this library and further expand the capabilities are presented.

36 MATERIALS SCIENCE

Laboratory Directed Research & Development: FY23 Annual Report

Sandia is a federally funded research and development center (FFRDC) focused on developing and applying advanced science and engineering capabilities to mitigate national security threats. This is accomplished through the exceptional staff leading research at the Labs and partnering with universities and companies. Sandia’s LDRD program aims to maintain the scientific and technical vitality of the Labs and to enhance the Labs’ ability to address future national security needs. The program funds foundational, leading-edge discretionary research projects that cultivate and utilize core science, technology, and engineering (ST&E) capabilities. Per Congressional intent (P.L. 101-510) and Department of Energy (DOE) guidance (DOE Order 413.2C, Chg 1), Sandia’s LDRD program is crucial to maintaining the nation’s scientific and technical vitality

96 KNOWLEDGE MANAGEMENT AND PRESERVATION

2024 OES-Environmental 2024 State of the Science Report, Chapter 8: Marine Renewable Energy Data and Information Systems

As the marine renewable energy (MRE) sector grows, large amounts of environmental and technical data and information are being collected. When these data and information are openly available, they can be used to guide research and development, inform responsible siting and consenting of projects, and increase stakeholder understanding through transparency. For example, quality environmental data collected during the siting, consenting, construction, operation, and decommissioning of MRE projects can all play key roles in better characterizing baseline conditions, developing effective monitoring and mitigation strategies, and retiring environmental risks through data transferability (see Chapter 6). Ensuring that these data and information are easily discoverable and accessible will help the MRE sector make informed decisions and coexist in an increasingly busy ocean environment.

16 TIDAL AND WAVE POWER