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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 73 records · Page 4
All sourcesNASA NTRSDOE OSTI
DOE OSTI2018

Profiling of bioactive lipids in different dendritic cell subsets using an improved multiplex quantitative LC-MS/MS method

Highlights: • We improved a LC-MS/MS method to measure many mediators simultaneously. • Conventional DCs produce inflammatory lipids (leukotrienes) preferentially. • RA-DCs produce PGI{sub 2}, PGE{sub 2}, and TXA{sub 2} preferentially. Lipids are an energy source and key components of the cell membrane; however, they are also bioactive mediators of physiological and pathophysiological phenomena. Quantification of bioactive lipids is not easy because they have diverse chemical properties and are present in trace amounts. Here, we improved a multiplex method of quantifying bioactive lipids, thereby enabling measurement of 90 compounds simultaneously. We then used this system to quantify bioactive lipids produced by two subsets of dendritic cells (DCs): all-trans retinoic acid-treated DCs (RA-DCs) (a type of tolerogenic DC (tDC)) and conventional DCs (cDCs). We found that cDCs produced inflammatory lipid mediators such as leukotrienes, whereas RA-DCs produced anti-inflammatory lipid mediators such as prostaglandin I{sub 2}. Consistent with this, cDCs expressed larger amounts of mRNA encoding 5-lipoxygenase and LTA{sub 4} hydrolase (both responsible for leukotriene biosynthesis) and RA-DCs produced larger amounts of mRNA encoding prostaglandin I{sub 2} synthase. Taken together, the results suggest that the method is useful for clarifying the roles of bioactive lipids during immune responses.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2024

Improved lipid analysis using a 2D-LC-MS system with a novel injection procedure

The aim of this study was to improve analysis of nonpolar lipidomics sample extracts using reversed phase (RP) chromatography. A 4/3/3 (v/v/v) mixture of methanol/methyl tert-butyl ether/chloroform (MeOH/MTBE/CHCl 3 , MMC) was chosen for sample extraction solvent based on its proven extraction capability for several lipid classes. To avoid carry over, loss of analytes and peak distortion the loops and all capillaries of the presented LC system were flushed and filled up with methanol until the analytical column. Here, the choice of methanol was due to its weak elution strength and being infinitely miscible with MMC and several other nonpolar solvents. This allowed injection of a 100 μl sample that was 20 μl nonpolar extraction solvent diluted fivefold with methanol. All lipids of 25 lipid classes were transferred quantitatively to the column head where the online dilution of methanol was carried out with aqueous eluent for focusing the lipid analytes. The weak elution strength of methanol prevented peak distortions. The consecutive reversed phase elution resulted in remarkably narrow peaks (full width at half maximum was 0.07–0.08 min typically) and enhanced sensitivity (limit of detection usually in sub nM region) because of increased sample injection volume and narrow peaks. Calibration and quality control samples made by diluting commercial lipid standards 200–50000 times confirmed the applicability of this approach both for targeted lipid quantification and for untargeted quantitative comparison of lipids from different sources.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2024

A Trapping-Micro-LC-FAIMS/dCV-MS Strategy for Ultrasensitive and Robust Targeted Quantification of Protein Drugs and Biomarkers

The sensitivity of LC-MS in quantifying target proteins in plasma/tissues is significantly hindered by co-eluted matrix interferences. While antibody-based immuno-enrichment effectively reduces interferences, developing and optimizing antibodies are often time-consuming and costly. Here, in this study, by leveraging the orthogonal separation capability of Field Asymmetric Ion Mobility Spectrometry (FAIMS), we developed a FAIMS/differential-compensation-voltage (FAIMS/dCV) method for antibody-free, robust, and ultra-sensitive quantification of target proteins directly from plasma/tissue digests. By comparing the intensity-CV profiles of the target vs. co-eluted endogenous interferences, the FAIMS/dCV approach identifies the optimal CV for quantification of each target protein, thus maximizing the signal-to-noise ratio (S/N). Compared to quantification without FAIMS, this technique dramatically reduces endogenous interferences, showing a median improvement of the S/N by 14.8-fold for the quantification of 17 representative protein drugs and biomarkers in plasma or tissues and a 5.2-fold median increase in S/N over conventional FAIMS approach, which uses the peak CV of each target. We also discovered that the established CV parameters remain consistent over months and are matrix-independent, affirming the robustness of the developed FAIMS/dCV method and the transferability of the method across matrices. The developed method was successfully demonstrated in three applications: the quantification of monoclonal antibodies with sub-ng/mL LOQ in plasma, an investigation of the time courses of evolocumab and its target PCSK9 in a preclinical setting, and a clinical investigation of low abundance obesity-related biomarkers. This innovative and easy-to-use method has extensive potential in clinical and pharmaceutical research, particularly where sensitive and high-throughput quantification of protein drugs and biomarkers is required.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2016

Enabling Efficient and Confident Annotation of LC-MS Metabolomics Data through MS1 Spectrum and Time Prediction

Liquid chromatography coupled to electrospray ionization-mass spectrometry (LC–ESI-MS) is a versatile and robust platform for metabolomic analysis. However, while ESI is a soft ionization technique, in-source phenomena including multimerization, nonproton cation adduction, and in-source fragmentation complicate interpretation of MS data. Here, we report chromatographic and mass spectrometric behavior of 904 authentic standards collected under conditions identical to a typical nontargeted profiling experiment. The data illustrate that the often high level of complexity in MS spectra is likely to result in misinterpretation during the annotation phase of the experiment and a large overestimation of the number of compounds detected. However, our analysis of this MS spectral library data indicates that in-source phenomena are not random but depend at least in part on chemical structure. These nonrandom patterns enabled predictions to be made as to which in-source signals are likely to be observed for a given compound. Using the authentic standard spectra as a training set, we modeled the in-source phenomena for all compounds in the Human Metabolome Database to generate a theoretical in-source spectrum and retention time library. A novel spectral similarity matching platform was developed to facilitate efficient spectral searching for nontargeted profiling applications. Taken together, this collection of experimental spectral data, predictive modeling, and informatic tools enables more efficient, reliable, and transparent metabolite annotation.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2012

Discovery of novel glucose-regulated proteins in isolated human pancreatic islets using LC-MS/MS-based proteomics

The prevalence of diabetes mellitus is increasing dramatically throughout the world, and the disease has become a major public health issue. The most common form of the disease, type 2 diabetes, is due in part to insufficient insulin production from the pancreatic beta-cell. Since glucose is the most potent and physiologically important regulators of beta-cell function under physiological conditions, understanding the insulin secretory defect underlying type 2 diabetes requires a better understanding of glucose regulation of beta-cell function. To this aim, a bottom-up LC-MS/MS-based proteomics approach was used to profile pooled islets from multiple donors under basal (5 mM) or high (15 mM) glucose conditions. Our analysis discovered 256 differentially abundant proteins ({approx}p < 0.05) after 24 h of high glucose exposure from more than 4500 identified in total. Several novel glucose-regulated proteins were elevated under high glucose conditions, including regulators of mRNA splicing (Pleiotropic regulator 1), processing (Retinoblastoma binding protein 6), and function (Nuclear RNA export factor 1), in addition to Neuron navigator 1 and Plasminogen activator inhibitor 1. Proteins whose abundances markedly decreased during incubation at 15 mM glucose included Bax inhibitor 1 and Synaptotagmin-17. Many proteins found to be differentially abundant after high glucose stimulation were uncharacterized or hypothetical. These findings expand our knowledge of glucose regulation of the human islet proteome and suggest many hitherto unknown responses to glucose that require additional studies to explore novel functional roles.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2017

LIQUID: an-open source software for identifying lipids in LC-MS/MS-based lipidomics data

We introduce an open-source software, LIQUID, for semi-automated processing and visualization of LC-MS/MS based lipidomics data. LIQUID provides users with the capability to process high throughput data and contains a customizable target library and scoring model per project needs. The graphical user interface provides visualization of multiple lines of spectral evidence for each lipid identification, allowing rapid examination of data for making confident identifications of lipid molecular species.

Environmental Molecular Sciences Laboratory↗
DOE OSTI2016

Aharonov-Bohm phases in a quantum LC circuit

We study novel types of contributions to the partition function of the Maxwell system defined on a small compact manifold. These contributions, often not addressed in the perturbative treatment with physical photons, come about as a result of tunneling transitions between topologically distinct but physically identical vacuum winding states. These new terms give an extra contribution to the Casimir pressure, yet to be measured. We argue that this effect is highly sensitive to a small external electric field, which should be contrasted with the conventional Casimir effect, where the vacuum photons are essentially unaffected by any external field. Furthermore, photons will be emitted from the vacuum in response to a time-dependent electric field, similar to the dynamical Casimir effect in which real particles are radiated from the vacuum due to the time-dependent boundary conditions. We also propose an experimental setup using a quantum LC circuit to detect this novel effect. We expect physical electric charges to appear on the capacitor plates when the system dimension is such that coherent Aharonov-Bohm phases can be maintained over macroscopically large distances.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2026

Secondary-Side Active Rectifier Synchronization and Control in LCC-LC Compensated Inductive Power Transfer Systems

This paper proposes a communication-less synchronization and output power control strategy for LCC-LC compensated inductive power transfer systems with a secondaryside active rectifier. By replacing the passive rectifier with an active bridge, the proposed architecture eliminates the need for a separate secondary-side DC-DC converter and enables direct regulation of battery power. The key challenge in such a system is achieving robust synchronization of the secondary active bridge with the primary inverter without access to primary-side signals. To address this issue, the secondary-side variables are analyzed and the current through the secondary series inductor is identified as a load-independent synchronization variable with a fixed phase relationship to the primary excitation. A fixed-frequency second order generalized (SOGI)-based phase locked loop (PLL) is used to estimate the switching phase and frequency, and a phase-shift-based output power controller is developed using a phasor-transformer model of the active bridges. A modified control formulation is further introduced to remove phase-dependent loop-gain variation and simplify controller design. Simulation results validate the proposed method under both fixed and varying switching-frequency conditions, demonstrating successful frequency tracking from 82 kHz to 88 kHz and accurate output power regulation over a wide operating range. The proposed method offers a compact and effective solution for high-power IPT systems by enabling secondary-side synchronization and control without wireless communication or an additional DC-DC conversion stage.

Fernandes, Arnold Anthony [ORNL] (ORCID:0009000631↗
DOE OSTI2018

Binary Phase SLMs Based on the LC Matrix of Video Projector

Binary phase modulation is demonstrated with the aid of commercially available LC matrix. Elements of plane diffraction optics (cylindrical and spherical lenses) are fabricated and experimentally studied. Limitations related to a finite size of a pixel of a binary diffraction SLM are considered.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2013

MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis

MultiAlign is a free software tool that aligns multiple liquid chromatography-mass spectrometry datasets to one another by clustering mass and LC elution features across datasets. Applicable to both label-free proteomics and metabolomics comparative analyses, the software can be operated in several modes. Clustered features can be matched to a reference database to identify analytes, used to generate abundance profiles, linked to tandem mass spectra based on parent precursor masses, and culled for targeted liquid chromatography-tandem mass spectrometric analysis. MultiAlign is also capable of tandem mass spectral clustering to describe proteome structure and find similarity in subsequent sample runs.

Environmental Molecular Sciences Laboratory↗
DOE OSTI2012

Extraction of O-isobutyl S-(2-diethylaminoethyl)methyl phosphothioate (Russian VX) and related chemical signatures from liquid eggs and analysis by Liquid Chromatography with Detection by Mass Spectrometry (LC-MS) and Gas Chromatography with Detection by Mass Spectrometry (GC-MS)

The following procedure describes the extraction of O-isobutyl S-(2- diethylaminoethyl)methyl phosphothioate (Russian VX) and related chemical signatures from liquid eggs and analysis by Liquid Chromatography with Detection by Mass Spectrometry (LC-MS) and Gas Chromatography with Detection by Mass Spectrometry (GC-MS) to determine the Russian VX chemical attribution signatures present in a contaminated liquid egg sample. These chemical attribution signatures may indicate the synthetic origin of the Russian VX sample.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2012

Extraction of O-isobutyl S-(2-diethylaminoethyl)methyl phosphothioate (Russian VX) and related chemical signatures from hot dogs and analysis by Liquid Chromatography with Detection by Mass Spectrometry (LC-MS) and Gas Chromatography with Detection by Mas

The following procedure describes the extraction of O-isobutyl S-(2- diethylaminoethyl)methyl phosphothioate (Russian VX) and related chemical signatures from hot dogs and analysis by Liquid Chromatography with Detection by Mass Spectrometry (LC-MS) and Gas Chromatography with Detection by Mass Spectrometry (GC-MS) to determine the Russian VX chemical attribution signatures present in a contaminated hot dog sample. These chemical attribution signatures may indicate the synthetic origin of the Russian VX sample.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2014

Extraction of Sulfur Mustard Metabolites from Urine Samples and Analysis by Liquid Chromatography-High-Resolution Mass Spectrometry (LC-HRMS)

The following procedure describes the extraction of sulfur mustard metabolites (principally 1,1’-sulfonylbis[2-(methylthio)ethane] (SBMTE)) and related chemicals from urine and subsequent analysis by liquid chromatography with detection by high resolution mass spectrometry (LC-HRMS) to determine signatures present in a contaminated urine sample. Positive identification of such signatures in urine may signify patient exposure to sulfur mustard (HD). A future SOP will detail analysis of these metabolites by gas chromatography-tandem mass spectrometry (GC-MS/MS).

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2021

LANL-UW Collaboration on LC-QTOF Datasets (Annual Report)

Prior to the application of non-targeted chemometric techniques (i.e., Fisher ratio analysis), pre-processing steps must be carried out on the data collected using liquid chromatography-quadrupole time of flight (LC-QTOF) mass spectrometry. Data compression is the most important pre-processing step due to the vast number of high-resolution mass channels (m/z; 0.0001 Da) collected. Our first approach was to bin the mass spectral dimension to 0.01 Da; however, this approach was computationally expensive and did not preserve the high-resolution data.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2026

SQUID Readout of a High-$Q$ Superconducting $LC$ Resonator

We demonstrate the readout of a superconducting $LC$ resonator, with $Q \approx 2 \times 10^{6}$ at approximately 250 kHz, using a dc SQUID followed by a SQUID series-array amplifier readout chain. We find that $Q$ depends on the SQUID flux-bias point, increasing near the shallow-slope point of the SQUID modulation curve and decreasing near the steep-slope point, consistent with the previously observed SQUID damping effects. From this variation, we infer the SQUID effective input impedance. We further infer the effective temperature of the resonator circuit from the resonance peak in the noise spectrum and show that it also depends on the SQUID flux-bias point, suggesting a possible contribution from SQUID back-action noise. This system provides a working prototype for future experiments based on lumped-element resonators with SQUID readout, in particular low-mass axion searches within the DMRadio program.

FOS: Physical sciences↗
DOE OSTI2024

Orbitrap LC-MS Analysis of Nanoparticle Composition at the EPCAPE Mount Soledad site between 04 18 2023 and 06 14 2023

Weekly peak lists containing m/z, intensity, and assigned formula for filter samples, size selected for sub-100 nm particles. Filters were collected daily between 4/18/23 and 6/14/23, grouped based on calendar week for extraction, and analyzed via Thermo Scientific Q Exactive Plus Orbitrap LC-MS. Formulas were assigned to background-corrected peak lists and restricted to CHONS/CHONSNa atoms for the negative and positive modes respectively. Filters were grouped into calendar weeks 0-8 with dates provided in README text file.

54 ENVIRONMENTAL SCIENCES↗