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DOE OSTI2022

A reference tissue atlas for the human kidney

Kidney Precision Medicine Project (KPMP) is building a spatially specified human kidney tissue atlas in health and disease with single-cell resolution. Here, we describe the construction of an integrated reference map of cells, pathways, and genes using unaffected regions of nephrectomy tissues and undiseased human biopsies from 56 adult subjects. We use single-cell/nucleus transcriptomics, subsegmental laser microdissection transcriptomics and proteomics, near-single-cell proteomics, 3D and CODEX imaging, and spatial metabolomics to hierarchically identify genes, pathways, and cells. Integrated data from these different technologies coherently identify cell types/subtypes within different nephron segments and the interstitium. These profiles describe cell-level functional organization of the kidney following its physiological functions and link cell subtypes to genes, proteins, metabolites, and pathways. They further show that messenger RNA levels along the nephron are congruent with the subsegmental physiological activity. This reference atlas provides a framework for the classification of kidney disease when multiple molecular mechanisms underlie convergent clinical phenotypes.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2022

Integrated Pest Management (IPM) for Early Detection Algal Crop Protection. Final Report

During large-scale, outdoor algal biomass growth, production strain(s) are subject to attack by pathogens, predators, and non-productive competitors, compromising the biomass yield. The project team at UCSD developed and demonstrated the effectiveness of Volatile Organic Compound, VOC, analysis via mass spectrometry (MS) as an early detection system for the presence of production algal ponds infection. The MS detection can then trigger high-resolution melt analysis (HRMA) and enhanced quantitative PCR (qPCR) to identify predatory or pathogenic species precisely. This study gathered the foundational data informing how wholly automated systems monitor the health of production ponds. By detecting the presence of low molecular weight VOCs in the air space above ponds, the instrument was able to mimic “sniffing” the health of the algae pond. This early warning system will be free growers from time-consuming and costly regular surveillance of ponds with the current techniques, such as qPCR and flow-cam assays, which are slower, less sensitive, and not easily fully automated, resulting in increased production efficiency through the reduction of crop loss. This project demonstrated that Chemical Ionization Mass Spectrometry, CIMS, could serve as a real-time monitor of ponds health tracking up to 100 different VOCs simultaneously for continuous periods up to 60 days without interruption, signaling infection within an algal crop 24 to 36 hours prior to techniques such as qPCR and microscopy. While mass spectrometry is an expensive tool, this simple VOC sampling system proved not only to be sensitive and robust but could to multiplexed to monitor several ponds, lowering the overall cost serially. This technology demonstrated a reduction in biomass production cost by approximately 50% compared to growers not employing any detection methodology.

09 BIOMASS FUELS↗

NASA NTRSDate not supplied

Identifying Neutron Irradiation in Space to Mitigate Bio-Medical Effects

One of the primary challenges to interplanetary human travel is mitigation of radiation expo-sure. As fast transit with LENR driven or conventional nuclear electric (NEP) or thermal propulsion (NTP) may be imminent, time and level of radiation exposure composingALARA (As Low as Rea-sonably Achievable) must be ascertained rapidly and precisely. Since acute physiological effects are difficult to detect, and chronic effects on crew health are delayed and potentially trans-generational, improved detection technologies will be game-changing and an essential element of the crew health monitoring and environmental protection toolkit.Secondary Galactic Cosmic Ray (GCR) induced neutrons are an additional hazard.

space medicine↗

DOE OSTI2022

Ultra-Wideband Microwave Imaging System for Root Phenotyping

The roots are a vital organ for plant growth and health. The opaque surrounding environment of the roots and the complicated growth process means that in situ and non-destructive root phenotyping face great challenges, which thus spur great research interests. The existing methods for root phenotyping are either unable to provide high-precision and high accuracy in situ detection, or they change the surrounding root environment and are destructive to root growth and health. Thus,we propose and develop an ultra-wideband microwave scanning method that uses time reversal to achieve in situ root phenotyping nondestructively. To verify the method’s feasibility, we studied an electromagnetic numerical model that simulates the transmission signal of two ultra-wideband microwave antennas. The simulated signal of roots with different shapes shows the proposed system’s capability to measure the root size in the soil. Experimental validations were conducted considering three sets of measurements with different sizes, numbers and locations, and the experimental results indicate that the developed imaging system was able to differentiate root sizes and numbers with high contrast. The reconstruction from both simulations and experimental measurements provided accurate size estimation of the carrots in the soil, which indicates the system’s potential for root imaging.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2024

A review of criticality dosimetry at the Y-12 National Security Complex and practical importance of dose accuracy in emergency response

A nuclear criticality results in the emission of both neutron and gamma radiation and can produce doses to personnel near the event that exceed 0.1 Gy (10 rad). The primary purpose of nuclear accident dosimetry is to rapidly identify affected personnel in need of prompt medical treatment and to reassure personnel who have been only minimally exposed. While accurate dosimetry is desired, it must be recognized that dose determinations made from whole-body dosimeters or simple triage methods are very rough estimates and contain significant uncertainties. Even when accounting for factors like varying neutron energy spectra, mean photon energies, body orientation within the radiation field, and transient effects on dosimeter response, etc., the end value is a dosimetric quantity defined for very specific radiological conditions and determined within a simple phantom usually at a single depth. Of more importance is the biological response to the radiation, which will vary by person and can be affected by the individual’s radiation sensitivity, age, gender, mass, and underlying health conditions. The overall biological, person-specific response to a given dose cannot be precisely determined except by patient symptom observation and individual biological dosimetry (e.g. chromosome analysis, lymphocyte ratios, etc.). This work describes and discusses the criticality accident dosimetry program at the Y-12 National Security Complex, a United States Department of Energy National Nuclear Security Administration facility. In conclusion, the primary goals of the Y-12 accident dosimetry program are, among others, the rapid identification of significantly exposed persons, prompt routing of exposed workers for medical evaluation and treatment, and the ultimate processing of dosimeters to assign doses to personnel.

61 RADIATION PROTECTION AND DOSIMETRY↗

DOE OSTI2023

Flash NanoPrecipitation as an Agrochemical Nanocarrier Formulation Platform: Phloem Uptake and Translocation after Foliar Administration

The increasing severity of pathogenic and environmental stressors that negatively affect plant health has led to interest in developing next-generation agrochemical delivery systems capable of precisely transporting active agents to specific sites within plants. In this work, we adapt Flash NanoPrecipitation (FNP), a scalable nanocarrier (NC) formulation technology used in the pharmaceutical industry, to prepare organic core–shell NCs and study their efficacy as foliar or root delivery vehicles. NCs ranging in diameter from 55 to 200 nm, with surface zeta potentials from -40 to +40 mV, and with seven different shell material properties were prepared and studied. Shell materials included synthetic polymers poly(acrylic acid), poly(ethylene glycol), and poly(2-(dimethylamino)ethyl methacrylate), naturally occurring compounds fish gelatin and soybean lecithin, and semisynthetic hydroxypropyl methylcellulose acetate succinate (HPMCAS). NC cores contained a gadolinium tracer for tracking by mass spectrometry, a fluorescent dye for tracking by confocal microscopy, and model hydrophobic compounds (alpha tocopherol acetate and polystyrene) that could be replaced by agrochemical payloads in subsequent applications. After foliar application onto tomato plants with Silwet L-77 surfactant, internalization efficiencies of up to 85% and NC translocation efficiencies of up to 32% were observed. Significant NC trafficking to the stem and roots suggests a high degree of phloem loading for some of these formulations. Results were corroborated by confocal microscopy and synchrotron X-ray fluorescence mapping. NCs stabilized by cellulosic HPMCAS exhibited the highest degree of translocation, followed by formulations with a significant surface charge. The results from this work indicate that biocompatible materials like HPMCAS are promising agrochemical delivery vehicles in an industrially viable pharmaceutical nanoformulation process (FNP) and shed light on the optimal properties of organic NCs for efficient foliar uptake, translocation, and delivery.

36 MATERIALS SCIENCE↗

NASA NTRS2002

Remote Sensing and Information Technology for Large Farms

A method of applying of remote sensing (RS) and information management technology to help large farms produce at maximum efficiency is undergoing development. The novelty of the method does not lie in the concept of "precision agriculture," which involves variation of seeding, of application of chemicals, and of irrigation according to the spatially and temporally local variations in the growth stages and health of crops and in the chemical and physical conditions of soils. The novelty also does not lie in the use of RS data registered with other data in a geographic information system (GIS) to guide the use of precise agricultural techniques. Instead, the novelty lies in a systematic approach to overcoming obstacles that, heretofore, have impeded the timely distribution of reliable, relevant, and sufficient GIS data to support day-to-day, acre-to-acre decisions concerning the application of precise agricultural techniques to increase production and decrease cost. The development and promotion of the method are inspired in part by a vision of equipping farm machinery to accept GIS (including RS) data and using the data for automated or semiautomated implementation of precise agricultural techniques. Primary examples of relevant GIS data include information on plant stress, soil moisture, and effects of applied chemicals, all derived by automated computational analysis of measurements taken by one or more airborne spectroradiometers. Proper management and timeliness of the large amount of GIS information are of paramount concern in agriculture. Information on stresses and changes in crops is especially perishable and important to farmers. The need for timeliness and management of information is satisfied by use of computing hardware and software capable of (1) rapid georectification and other processing of RS data, (2) packaging the output data in the form of GIS plots, and (3) making the data available to farmers and other subscribers by Internet password access. It is a goal of this development program to make RS data available no later than the data after an aerial survey. In addition, data from prior surveys are kept in the data base. Farmers can, for example, use current and prior data to analyze changes.

Williams, John E.↗

NASA NTRS2003

Remote Sensing and Information Technology for Large Farms

A method of applying remote sensing (RS) and information-management technology to help large farms produce at maximum efficiency is undergoing development. The novelty of the method does not lie in the concept of precision agriculture, which involves variation of seeding, of application of chemicals, and of irrigation according to the spatially and temporally local variations in the growth stages and health of crops and in the chemical and physical conditions of soils. The novelty also does not lie in the use of RS data registered with other data in a geographic information system (GIS) to guide the use of precise agricultural techniques. Instead, the novelty lies in a systematic approach to overcoming obstacles that, heretofore, have impeded the timely distribution of reliable, relevant, and sufficient GIS data to support day-to-day, acre-to-acre decisions concerning the application of precise agricultural techniques to increase production and decrease cost. The development and promotion of the method are inspired in part by a vision of equipping farm machinery to accept GIS (including RS) data and using the data for automated or semi-automated implementation of precise agricultural techniques. Primary examples of relevant GIS data include information on plant stress, soil moisture, and effects of applied chemicals, all derived by automated computational analysis of measurements taken by one or more airborne spectroradiometers. Proper management and timeliness of the large amount of GIS information are of paramount concern in agriculture. Information on stresses and changes in crops is especially perishable and important to farmers. The need for timeliness and management of information is satisfied by use of computing hardware and software capable of (1) rapid geo-rectification and other processing of RS data, (2) packaging the output data in the form of GIS plots, and (3) making the data available to farmers and other subscribers by Internet password access. It is a goal of this development program to make RS data available no later than the data after an aerial survey. In addition, data from prior surveys are kept in the data base. Farmers can, for example, use current and prior data to analyze changes.

Williams, John E.↗

NASA NTRS1991

SSTAC/ARTS review of the draft Integrated Technology Plan (ITP). Volume 6: Controls and guidance

Viewgraphs of briefings from the Space Systems and Technology Advisory Committee (SSTAC)/ARTS review of the draft Integrated Technology Plan (ITP) on controls and guidance are included. Topics covered include: strategic avionics technology planning and bridging programs; avionics technology plan; vehicle health management; spacecraft guidance research; autonomous rendezvous and docking; autonomous landing; computational control; fiberoptic rotation sensors; precision instrument and telescope pointing; microsensors and microinstruments; micro guidance and control initiative; and earth-orbiting platforms controls-structures interaction.

Source record↗

DOE OSTI2025

Data-Driven State of Health Estimation for Second-Life Batteries Using Interpolated Synthetic Data and Feature Selection

Accurate estimation of the State of Health (SOH) for second-life batteries (SLBs) is crucial given their increasing use in energy storage applications. Precise SOH prediction is essential for safe operation and robust battery management systems. A major challenge is the limited availability of datasets for building reliable degradation models. To address this, synthetic data generation through linear interpolation is performed to extend the available data, making it more representative of real-world battery operating conditions. By analyzing feature correlation with SOH, the most relevant features are selected for the model. The proposed approach employs a convolutional neural network (CNN) model trained on this interpolated, feature-selected dataset, using time series data of voltage, temperature, and current over a cycle. By focusing on highly correlated features, the model achieves over 95% accuracy, with mean absolute error and root mean squared error up to 2.27% and 2.64%, respectively, in SOH estimation for two battery datasets tested. These results highlight the potential of combining synthetic data generation and feature selection to enhance SOH predictions, showcasing the superior performance of the proposed CNN model for both new batteries and SLBs.

feature selection↗

DOE OSTI2023

The First Virtual Human Global Summit: Prepublication Meeting Report

This is the prepublication report for the First Virtual Human Global Summit held in October 2023. Organized collaboratively by Frederick National Laboratory for Cancer Research, Brookhaven National Laboratory, University College London, and Eviden, the 2023 Virtual Human Global Summit convened global thought leaders to bring together multiple perspectives across domains and organizations. The intent of the Summit was to foster collaboration among key leaders internationally whose combined efforts are required to advance patient-focused precision medicine through medical digital twins. Participants represented cancer and biomedical research, industry, infrastructure, clinical research, community health, non-profit organizations, government, and general public interests. The Summit included over 80 attendees across three continents including native American tribes. The Summit was held to share insights about the state of the art for medical digital twins, provide motivating opportunities and identify key challenges along the path to improved health and wellness through virtual human models and personalized digital twins. The Summit included sessions emphasizing the primary areas of research, infrastructure, clinical application, government support, and adoption/sustainability. Several examples of digital twins were referenced or mentioned through the course of the Summit including digital twin approaches in cancer, radiation oncology, molecular scale digital twins, diabetes, and sepsis. The summit report includes perspectives on the current state, challenges and guidance across research, infrastructure, clinical translation and community adoption, as well as multiple key insights from industry perspectives.

99 GENERAL AND MISCELLANEOUS↗

NASA NTRS1992

US Department of Energy's Efforts in Intelligent Processing Equipment

The Department of Energy (DOE) uses intelligent processing equipment (IPE) technologies to conduct research and development and manufacturing for energy and nuclear weapons programs. This paper highlights several significant IPE efforts underway in DOE. IPE technologies are essential to the accomplishment of DOE's missions, because of the need for small lot production, precision, and accuracy in manufacturing, hazardous waste management, and protection of the environment and the safety and health of the workforce and public. Applications of IPE technologies include environmental remediation and waste handling, advanced manufacturing, and automation of tasks carried out in hazardous areas. DOE laboratories have several key programs that integrate robotics, sensor, and control technologies. These programs embody a considerable technical capability that also may be used to enhance U.S. industrial competitiveness. DOE encourages closer cooperation with U.S. industrial partners based on mutual benefits. This paper briefly describes technology transfer mechanisms available for industrial involvement.

Peavy, Richard D.↗

NASA NTRS2019

Optical Geolocation for Small Unmanned Aerial Systems

This paper presents an airborne optical geolocation system using four optical targets to provide position and attitude estimation for a sUAS supporting the NASA Acoustic Research Mission (ARM), where the goal is to reduce nuisance airframe noise during approach and landing. A large precision positioned microphone array captures the airframe noise for multiple passes of a Gulfstream III aircraft. For health monitoring of the microphone array, the Acoustic Calibration Vehicle (ACV) sUAS completes daily flights with an onboard speaker emitting tones at frequencies optimized for determining microphone functionality. An accurate position estimate of the ACV relative to the array is needed for microphone health monitoring. To this end, an optical geolocation system using a downward facing camera mounted to the ACV was developed. The 3D positioning of the ACV is computed using the pinhole camera model. A novel optical geolocation algorithm first detects the targets, then a recursive algorithm tightens the localization of the targets. Finally, the position of the sUAS is computed using the image coordinates of the targets, the 3D world coordinates of the targets, and the camera matrix. A Real-Time Kinematic GPS system is used to compare the optical geolocation system.

Dolph, Chester V.↗

DOE OSTI2024

Evaluating SWAT + model uncertainties for human and natural outcomes: Application in a Great Lakes agricultural watershed

Nutrient exports from agricultural lands in the Great Lakes Region pose significant threats to water quality and ecological health through eutrophication, hypoxia, and harmful algal blooms. Climate change and agricultural adaptation practices complicate future nutrient loading due to intensified hydrologic cycles and land use decisions. Our research focuses on evaluating the Soil and Water Assessment Tool (SWAT) plus model parametric uncertainties for human and natural outcomes across different scales. These factors are integral to ensuring a balance between productive agricultural practices and maintaining the health of watershed hydrology. However, uncertainties in modeling such complex interactions pose significant challenges, limiting our ability to precisely determine critical factors that influence crop yield and soil moisture. Our analysis employs Sobol global sensitivity analysis to evaluate first-order, second order, and total-order indices for SWAT crop growth parameter, ensuring comprehensive assessment of individual and interactive effects on model outputs. The objective is to identify the parameters that significantly affect model outputs for crop yield and soil moisture and improve our understanding of their interactions at the basin and hydrological response unit (HRU) scale. Our case study, the Portage River Watershed, which drains into Lake Erie, is chosen to better capture finer scale interactions crucial for predicting nutrient loading under future climate scenarios. This foundational work is aimed at setting the stage for the future development of an agent-based model (ABM). The ABM model would incorporate SWAT outputs to dynamically simulate decision-making processes.

Bunyon, Enock↗

DOE OSTI2025

Feed the fish: A review of aquaculture feeders and their strategic implementation

Automatic feeders are revolutionizing aquaculture by enabling precise and controlled feeding regimens that optimize growth, reduce feed waste, and enhance the overall efficiency of farming operations. Demand feeders provide some similar benefits but with feeding tailored to fish appetites and, in some cases, feed dispersal without electricity. This review explores the evolution, technological advancements, and applications of these feeders with a survey of recent research. It looks at common feeder designs and compares the pros and cons of five automatic feeder configurations in commercial use today. The article contrasts feeders and feed sizes for farmed species in different life stages and facilities, from hatcheries to ponds and offshore cages. It discusses the importance of species-tailored feeding strategies as well as impacts on fish behavior and health, nutrient delivery, and environmental sustainability. Incorporating sensors and on-site computing enables optimization in feeding algorithms that feeders then implement precisely and reliably. The review compiles results from multiple studies comparing growth rate, weight, and feed conversion ratio (FCR) outcomes from automatic feeders and demand feeders versus traditional hand-feeding regimens. The integration of feeders with real-time monitoring and data analytics is also discussed, highlighting future directions for research and adoption across the industry.

42 ENGINEERING↗

NASA NTRSDate not supplied

Relating Land Cover Change to Runoff Distribution Using NASA Earth Observations in Riley County, Kansas

Riley County, Kansas, has observed increased levels of flooding, potentially due to changes in land use/land cover (LULC) and seasonal vegetation variation. This study contrasts two methods of generating runoff curve numbers (CN) from 2006-2020. (1) The traditional Soil Conservation Service CN calculation method uses a look-up table and tracked LULC to determine runoff changes. These tables allow for CN values specific to various land and crop cover types and account for various farming best practices but lack flexibility in calculations for various seasons or plant health. (2) A dynamic method employs normalized difference vegetation index (NDVI) compiled over the rainy season each year to calculate CN using seasonal vegetation. This method allows for a more precise analysis of runoff variability within and between rainy seasons because it can be updated with greater temporal detail and it captures higher spatial resolutions by using NDVI as a proxy for LULC. This study further uses inputs from the United States Geologic Survey (USGS) National Land Cover Database (NLCD), the United States Department of Agriculture (USDA) Cropland Data Layer, and Landsat imagery to create more precise LULC raster datasets including both urban cover and crop-specific land use and curve number maps of the area. Results can guide decision makers in the City of Manhattan, Riley County Department of Planning and Development, Riley County Conservation District, the Kansas Forest Service, and the Kansas Department of Health and Environment toward informed decisions on resiliency strategies to address future flooding.

Ella Griffith↗

NASA NTRS2020

Riley County Water Resources Project Summary - Comparing Runoff Curve Calculation Methods to Inform Local Resiliency Initiatives in Riley County, Kansas

Riley County, Kansas, has observed increased levels of flooding, potentially due to changes in land use/land cover (LULC) and seasonal vegetation variation. This study contrasts two methods of generating runoff curve numbers (CN) from 2006-2020. (1) The traditional Soil Conservation Service CN calculation method uses a look-up table and tracked LULC to determine runoff changes. These tables allow for land cover-specific CN and account for various farming techniques but lack flexibility in calculations for various seasons or plant health. (2) A dynamic method employs normalized difference vegetation index (NDVI) compiled over the rainy season each year to calculate CN using seasonal vegetation. This method allows for a more precise analysis of runoff variability within and between rainy seasons because it can be updated with greater temporal detail and captures higher spatial resolutions by using NDVI as a proxy for LULC. This study further uses inputs from the United States Geological Survey (USGS) National Land Cover Database (NLCD), the United States Department of Agriculture (USDA) Cropland Data Layer, and Landsat imagery to create more precise LULC raster datasets including both urban cover and crop-specific land use and curve number maps of the area. Results can guide decision makers in the City of Manhattan, Riley County Department of Planning and Development, Riley County Conservation District, the Kansas Forest Service, and the Kansas Department of Health and Environment toward informed decisions on resiliency strategies to address future flooding.

DEVELOP Project Summary↗

DOE OSTI2024

Spatial patterns of historical crop yields reveal soil health attributes in US Midwest fields

Abstract Attaining high crop yields and increasing carbon storage in agricultural soils, while avoiding negative environmental impacts on water quality, soil erosion, and biodiversity, requires accurate and precise management of crop inputs and management practices. The long-term analysis of spatial and temporal patterns of crop yields provides insights on how yields vary in a field, with parts of field constantly producing either high yields or low yields and other parts that fluctuate from one year to the next. The concept of yield stability has shown to be informative on how plants translate the effects of environmental conditions (e.g., soil, climate, topography) across the field and over the years in the final yield, and as a valuable layer in developing prescription maps of variable fertilizer rate inputs. Using known relationships between soil health and crop yields, we hypothesize that areas with measured constantly low yield will return low carbon to the soil affecting its heath. On this premises, yield stability zones (YSZ) provide an effective and practical integrative measure of the small-scale variability of soil health on a field relative basis. We tested this hypothesis by measuring various metrics of soil health from commercial farmers’ fields in the north central Midwest of the USA in samples replicated across YSZ, using a soil test suite commonly used by producers and stakeholders active in agricultural carbon credits markets. We found that the use of YSZ allowed us to successfully partition field-relative soil organic carbon (SOC) and soil health metrics into statistically distinct regions. Low and stable (LS) yield zones were statistically lower in normalized SOC when compared to high and stable (HS) and unstable (US) yield zones. The drivers of the yield differences within a field are a series of factors ranging from climate, topography and soil. LS zones occur in areas of compacted soil layers or shallow soils (edge of the field) on steeper slopes. The US zones occurring with high water flow accumulation, were more dependent on topography and rainfall. The differences in the components of the overall soil health score (SHS) between these YSZ increased with sample depth suggesting a deeper topsoil in the US and HS zones, driven by the accumulation of water, nutrients, and carbon downslope. Comparison of the field management provided initial evidence that zero tillage reduces the magnitude of the variance in SOC and soil health metrics between the YSZ.

Fowler, Ames↗