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Relationship and distribution of Salmonella enterica serovar I 4,[5],12:i:- strain sequences in the NCBI Pathogen Detection database

Background: Of the > 2600 Salmonella serovars, Salmonella enterica serovar I 4,[5],12:i:- (serovar I 4,[5],12:i:-) has emerged as one of the most common causes of human salmonellosis and the most frequent multidrug-resistant (MDR; resistance to ≥3 antimicrobial classes) nontyphoidal Salmonella serovar in the U.S. Serovar I 4,[5],12:i:- isolates have been described globally with resistance to ampicillin, streptomycin, sulfisoxazole, and tetracycline (R-type ASSuT) and an integrative and conjugative element with multi-metal tolerance named Salmonella Genomic Island 4 (SGI-4). Results: We analyzed 13,612 serovar I 4,[5],12:i:- strain sequences available in the NCBI Pathogen Detection database to determine global distribution, animal sources, presence of SGI-4, occurrence of R-type ASSuT, frequency of antimicrobial resistance (AMR), and potential transmission clusters. Genome sequences for serovar I 4,[5],12:i:- strains represented 30 countries from 5 continents (North America, Europe, Asia, Oceania, and South America), but sequences from the United States (59%) and the United Kingdom (28%) were dominant. The metal tolerance island SGI-4 and the R-type ASSuT were present in 71 and 55% of serovar I 4,[5],12:i:- strain sequences, respectively. Sixty-five percent of strain sequences were MDR which correlates to serovar I 4,[5],12:i:- being the most frequent MDR serovar. The distribution of serovar I 4,[5],12:i:- strain sequences in the NCBI Pathogen Detection database suggests that swine-associated strain sequences were the most frequent food-animal source and were significantly more likely to contain the metal tolerance island SGI-4 and genes for MDR compared to all other animal-associated isolate sequences. Conclusions: Our study illustrates how analysis of genomic sequences from the NCBI Pathogen Detection database can be utilized to identify the prevalence of genetic features such as antimicrobial resistance, metal tolerance, and virulence genes that may be responsible for the successful emergence of bacterial foodborne pathogens.

59 BASIC BIOLOGICAL SCIENCES↗

Rapid mini‐chromosome divergence among fungal isolates causing wheat blast outbreaks in Bangladesh and Zambia

Summary The fungal pathogen,Magnaporthe oryzae Triticumpathotype, causing wheat blast disease was first identified in South America and recently spread across continents to South Asia and Africa. Here, we studied the genetic relationship among isolates found on the three continents. Magnaporthe oryzaestrains closely related to a South American field isolate B71 were found to have caused the wheat blast outbreaks in South Asia and Africa. Genomic variation among isolates from the three continents was examined using an improved B71 reference genome and whole‐genome sequences. We found strong evidence to support that the outbreaks in Bangladesh and Zambia were caused by the introductions of genetically separated isolates, although they were all close to B71 and, therefore, collectively referred to as the B71 branch. In addition, B71 branch strains carried at least one supernumerary mini‐chromosome. Genome assembly of a Zambian strain revealed that its mini‐chromosome was similar to the B71 mini‐chromosome but with a high level of structural variation. Our findings show that while core genomes of the multiple introductions are highly similar, the mini‐chromosomes have undergone marked diversification. The maintenance of the mini‐chromosome and rapid genomic changes suggest the mini‐chromosomes may serve important virulence or niche adaptation roles under diverse environmental conditions.

Plant Sciences↗

What's New in the NSRDB

The National Solar Radiation Database (NSRDB) provides solar resource data across the globe at a high temporal and spatial resolution. This data is primarily used in solar energy modeling. The NSRDB is updated annually for the United States and North, Central and South America and the data is currently available from 1998-2021. In 2022 the NSRDB was updated using the latest version of the underlying Physical Solar Model (PSM). This update includes improved surface albedo and gap-filling of cloud properties. The inclusion of these updates reduced the uncertainty in the data compared to previous versions of the NSRDB. The Himawari and Meteosat Indian Ocean Data Coverage (IODC) satellites were added to the Geostationary Operational Environmental Satellite (GOES) and made our coverage global. While standard data from the GOES continues to be served at an hourly 4km x 4km resolution, full resolution data has also been made available to the user. The NSRDB now contains over 200Tb of data with nearly 40Tb being added annually. We provide significant flexibility for data download depending on the amount of data required by the users. In this paper we provide an update on the current status on the NSRDB.

photovoltaic systems↗

The Impact of Topography on the Environment and Life Cycle of Weakly and Strongly Forced MCSs during RELAMPAGO

Intense deep convection and large mesoscale convective systems (MCSs) are known to occur downstream of the Andes in subtropical South America. Deep convection is often focused along the Sierras de Córdoba (SDC) in the afternoon and then rapidly grows upscale and moves to the east overnight. However, how the Andes and SDC impact the life cycle of MCSs under varying synoptic conditions is not well understood. Two sets of terrain-modification experiments using WRF are used to investigate the impact of topography in different synoptic regimes. The first set is run on the 13–14 December 2018 MCS case from RELAMPAGO, which featured a deep synoptic trough, strong lee cyclogenesis near the SDC, an enhanced low-level jet, and rapid upscale growth of an MCS. When the Andes are reduced by 50%, the lee cyclone and low-level jet that develop are weaker than with the full Andes, and the resulting MCS is weak and moves faster to the east. When the SDC are removed, few differences between the environment and resulting MCS relative to the control run are seen. A second set of experiments are run on the 25–26 January 2019 case in which a large MCS developed over the SDC and remained tied there for an extended period under weak synoptic forcing. Finally, the experiment that produces the most similar MCS to the control is when the Andes are reduced by 50% while maintaining the height of the SDC, suggesting the SDC may play a more important role in the MCS life cycle under quiescent synoptic conditions.

54 ENVIRONMENTAL SCIENCES↗

Seismic imaging of the Ecuadorian forearc and arc from joint ambient noise, local, and teleseismic tomography: catching the Nazca slab in the act of flattening

SUMMARY The Ecuadorian Andes are a complex region characterized by accreted oceanic terranes driven by the ongoing subduction of the oceanic Nazca plate beneath South America. Present-day tectonics in Ecuador are linked to the downgoing plate geometry featuring the subduction of the aseismic, oceanic Carnegie Ridge, which is currently entering the trench. Using seismic tomography, we jointly invert arrival times of P and S waves from local and teleseismic earthquakes with surface wave dispersion curves to image the structure of the forearc and magmatic arc of the Ecuadorian Andes. Our data set includes > 100 000 traveltimes recorded at 294 stations across Ecuador. Our images show the basement of the central forearc is composed of accreted oceanic terranes with high elastic wave speeds. Inboard of the Carnegie Ridge, the westernmost forearc and coastal cordilleras display relatively low Vp and Vs and high Vp/Vs values, which we attribute to the increased hydration and fracturing of the overriding plate due to the subduction of the thick oceanic crust of the Carnegie Ridge. We additionally image across-arc differences in magmatic architecture. The frontal volcanic arc overlies accreted terranes and is characterized by low velocities and high Vp/Vs indicative of partial melt reservoirs which are limited to the upper crust. In contrast, the main arc displays regions of partial melt across a wider range of depths. The Subandean zone of Ecuador has two active volcanoes built on continental crust suggesting the arc is expanding eastwards. The mid to lower crust does not show indications of being modified from the magmatic process. We infer that the slab is in the process of flattening as a consequence of early-stage subduction of the buoyant Carnegie Ridge.

58 GEOSCIENCES↗

Central-place foraging poses variable constraints year-round in a neotropical migrant

Background: “Central-place foragers” are constrained in their habitat selection and foraging range by the frequency with which they need to return to a central place. For example, chick-rearing songbirds that must feed their offspring hourly might be expected to have smaller foraging ranges compared to non-breeding songbirds that return nightly to a roost. Methods: We used GPS units to compare the foraging behaviour of an aerial insectivorous bird, the purple martin (Progne subis), during the breeding season in three regions across North America, as well as the non-breeding season in South America. Specifically, we tested foraging range size and habitat selection. Results: Foraging range did not vary among regions during breeding (14.0 ± 39.2 km 2 ) and was larger during the nonbreeding period (8840 ± 8150 km 2 ). Purple martins strongly preferred aquatic habitats to other available habitats year-round and in the Amazon commuted from night roosts in low productivity sediment-poor water, where risk of predation was probably low, to daytime foraging sites in productive sediment-rich water sites. Conclusions: We provide the first estimates for foraging range size in purple martins and demonstrate foraging preference for aquatic habitats throughout two stages of the annual cycle. Understanding foraging constraints and habitat of aerial insectivores may help plan conservation actions throughout their annual cycle. Future research should quantify foraging behaviour during the post-breeding period and during migration.

54 ENVIRONMENTAL SCIENCES↗

Assessing biogeographic survey gaps in bacterial diversity knowledge: A global synthesis of freshwaters

Freshwaters account for 0.8% of Earth's surface area, yet support >10% of known plant and animal species making them disproportionately biodiverse. Modern molecular techniques have begun to reveal microbial diversity, but application of these approaches to address global microbial biogeography is relatively unknown in freshwaters. Our aim was to identify gaps in microbial data coverage along climatic and landscape disturbance gradients and among terrestrial biomes and hydrographic regions for all freshwater ecosystems and three freshwater habitat types: lakes and reservoirs (lentic); streams and rivers (lotic); and wetlands. We reviewed literature on microbial diversity in freshwaters surveyed using 16S ribosomal RNA sequencing which identify microbial taxa. We georeferenced survey locations and used a geographic information system to identify and map gaps in survey coverage using open-source data for climate, landscape disturbance, terrestrial biomes, and freshwater ecoregions. In our study, we compiled 3,425 georeferenced survey locations reported from 963 studies. Streams were surveyed most frequently (60.8% of survey locations), followed by lakes (33.5%) and wetlands (5.6%). Surveys were concentrated in North America, central and western Europe, and Southeast Asia; 35% of freshwater ecoregions were surveyed at least once across freshwater habitat types, whereas 23%, 23%, and 12% were surveyed at least once for lentic, lotic, and wetland habitat types, respectively. The climatic gap analysis indicated coverage is high for temperate regions but lacking in the tropics and Arctic, particularly for wetland ecosystems. Our assessment revealed high climatic coverage of freshwater microbial diversity knowledge, but expansive ecoregional gaps attributable to biased sampling near research institutions in North America, western Europe, and China. Future surveys should target ecoregions in Africa, South America, Central Asia, Australia, and Antarctica. An essential next step will be to curate and disseminate sequencing efforts to facilitate the study of processes driving global diversity patterns.

16S rRNA↗

Waffle Homes: Utilizing Aerial Imagery of Unfinished Buildings to Determine Average Room Size

A primary function of the Population Density Tables Project (PDT) at Oak Ridge National Laboratory is to produce residential population densities per 1000 sq. ft. for each country and their associated first-level administrative units. This is accomplished by utilizing the average size of different types of dwelling areas (urban, rural, single-family, multi-family, etc.) and the average household size provided by a country’s Census or statistical bureau records. This data is available for the majority of Europe, North America, and large swathes of Asia, but is less easily found in Africa and South America. In these regions, Censuses generally report dwelling area by number of rooms, which poses the challenging question of how we can translate number of rooms to dwelling size when no dwelling size areas are available with which to compare. Using sub-meter resolution satellite imagery of Accra, Ghana, this challenge can be tackled using imagery of roofless buildings currently under construction that show the interior floor plan of the dwelling. A sample of buildings from the different neighborhoods of Accra can be digitized to provide an estimate and range of average room sizes of dwellings. This average room size can then be translated to a total dwelling area using the "number of rooms occupied by a household" variable from the Ghanaian Census. This intermediate step between average dwelling size and number of rooms occupied, fills the missing link that prevents PDT from continually producing new population densities for countries where dwelling size is unavailable through any official means.

Woody, Carson↗

Metalliferous Coals of Cretaceous Age: A Review

Critical elements in coal and coal-bearing sequences (e.g., Li, Sc, V, Ga, Ge, Se, Y and rare earth elements, Zr, Nb, Au, Ag, platinum group elements, Re, and U) have attracted great attention because their concentrations in some cases may be comparable to those of conventional ore deposits. The enrichment of critical elements in coals, particularly those of Carboniferous-Permian and Cenozoic ages, have generally been attributed to within-plate (plume-related) volcanism and associated hydrothermal activity. However, Cretaceous coals are not commonly rich in critical elements, with the exception of some (e.g., Ge and U) in localised areas. This paper globally reviewed metalliferous coals from Siberia, the Russian Far East, Mongolia, South America, the United States and Mexico, Canada (Alberta and British Columbia), China, Africa, and Australasia (Victoria, Queensland, New South Wales, South Australia, Northern Territory, New Zealand, Nelson, West Coast, Canterbury, Otago, and Southland). The world-class Ge-U or Ge deposits in North China, Mongolia, and Siberia are the only commercially significant representatives of the Cretaceous metalliferous coals, which are related to bio-chemical reduction of oxidized meteoric, hydrothermal, or sea waters by organic matter of the peat bogs. The common Cretaceous coals worldwide are generally not rich in critical elements because intensive igneous activity led to extensive acidification of terrestrial and marine waters, which are responsible for the low coal metallogenesis during the Cretaceous period, especially the Early Cretaceous time.

58 GEOSCIENCES↗

Raindrop Size Spectrum in Deep Convective Regions of the Americas

This study compared drop size distribution (DSD) measurements on the surfaces, the corresponding properties, and the precipitation modes among three deep convective regions within the Americas. The measurement compilation corresponded to two sites in the midlatitudes: the U.S. Southern Great Plains and Córdoba Province in subtropical South America, as well as to one site in the tropics: Manacapuru in central Amazonia; these are all areas where intense rain-producing systems contribute to the majority of rainfall in the Americas’ largest river basins. This compilation included two types of disdrometers (Parsivel and 2D-Video Disdrometer) that were used at the midlatitude sites and one type of disdrometer (Parsivel) that was deployed at the tropical site. The distributions of physical parameters (such as rain rate R, mass-weighted mean diameter D m , and normalized droplet concentration N w ) for the raindrop spectra without rainfall mode classification seemed similar, except for the much broader N w distributions in Córdoba. The raindrop spectra were then classified into a light precipitation mode and a precipitation mode by using a cutoff at 0.5 mm h -1 based on previous studies that characterized the full drop size spectra. These segregated rain modes are potentially unique relative to previously studied terrain-influenced sites. In the light precipitation and precipitation modes, the dominant higher frequency observed in a broad distribution of N w in both types of disdrometers and the identification of shallow light precipitation in vertically pointing cloud radar data represent unique characteristics of the Córdoba site relative to the others. As a result, the co-variability between the physical parameters of the DSD indicates that the precipitation observed in Córdoba may confound existing methods of determining the rain type by using the drop size distribution.

54 ENVIRONMENTAL SCIENCES↗

Energy Snapshot - Suriname

This is a snapshot of the energy landscape of Suriname, a country on the northeastern Atlantic coast of South America. It is bordered by the Atlantic Ocean to the north, French Guiana to the east, Guyana to the west and Brazil to the south.

44 EE - Strategic Programs, Energy Transition Init↗

Attributing human mortality from fire PM 2.5 to climate change

Climate change intensifies fire smoke, emitting hazardous air pollutants that impact human health. However, the global influence of climate change on fire-induced health impacts remains unquantified. Here, in this study, we used three well-tested fire-vegetation models in combination with a chemical transport model and health risk assessment framework to attribute global human mortality from fire fine particulate matter (PM 2.5 ) emissions to climate change. Of the 46401 (1960s) –to 98748 (2010s) annual fire PM 2.5 mortalities, 669 (1.2%, 1960s) –to 12566 (12.8%, 2010s) were attributed to climate change. The most substantial influence of climate change on fire mortality occurred in South America, Australia, and Europe, coinciding with decreased relative humidity, and in boreal forests with increased air temperature. Increasing relative humidity lowered fire mortality in other regions, like South Asia. Our study highlights the role of climate change in fire mortality, aiding public health authorities in spatial targeting adaptation measures for sensitive fire-prone areas.

54 ENVIRONMENTAL SCIENCES↗

GLM Observations of the Brightest Lightning in the Americas

Two years of Geostationary Lightning Mapper (GLM) science data are used to document the brightest lighting flashes observed on the Americas continent. The most radiant optical lightning emissions—termed “superbolts”—were first identified by the Vela satellite constellation in the 1970s (Turman, 1977) and are defined in terms of peak optical power. GLM is an integrating sensor that, instead, measures the total optical energy from a lightning pulse. Furthermore, while GLM might not correctly classify short-duration superbolts, its top lightning cases certainly fall in the superbolt category, and the wealth of GLM measurements over its stationary hemispheric field of view provide an unmatched sample of extraordinarily bright lightning. While radiant bolts in excess of 100× the optical energy of typical lightning are ubiquitous across the Americas and result from many types of lightning processes, we find the most radiant cases (>1,000×) are concentrated in the central United States and in the La Plata basin in South America. Coincident Earth Networks Global Lightning Network (ENGLN) observations reveal that these extremely bright emissions usually result from + CG strokes with high peak currents in long horizontal flashes outside of the convective core. Single cases of these megaflashes might produce multiple superbolts over their durations.

54 ENVIRONMENTAL SCIENCES↗

Seasonal variations in fire conditions are important drivers in the trend of aerosol optical properties over the south-eastern Atlantic

Abstract. From June to October, southern Africa produces one-third of the global biomass burning (BB) emissions by widespread fires. BB aerosols are transported westward over the south-eastern Atlantic with the mid-tropospheric winds, resulting in significant radiative effects. Ascension Island (ASI) is located midway between Africa and South America. From June 2016 to October 2017, a 17-month in situ observation campaign on ASI found a low single-scattering albedo (SSA) as well as a high mass absorption cross-section of black carbon (MACBC), demonstrating the strong absorbing marine boundary layer in the south-eastern Atlantic. Here we investigate the monthly variations of critical optical properties of BB aerosols, i.e. SSA and MACBC, during the BB seasons and the driving factors behind these variations. Both SSA and MACBC increase from June to August and decrease in September and October. The average SSA during the BB seasons is 0.81 at 529 nm wavelength, with the highest mean ∼ 0.85 in October and the lowest ∼ 0.78 in August. The absorption enhancement (Eabs) derived from the MACBC shows similar trends with SSA, with the average during the whole of the BB seasons at ∼ 1.96 and ∼ 2.07 in 2016 and 2017, respectively. As the Eabs is higher than the ∼ 1.5 commonly adopted value by climate models, this result suggests the marine boundary layer in the south-eastern Atlantic is more absorbing than model simulations. We find the enhanced ratio of BC to CO (ΔBC/ΔCO, equal to BC/ΔCO as the BC background concentration is considered to be 0) is well correlated with SSA and MACBC, providing a simple way to estimate the aerosol optical characteristics in the south-eastern Atlantic. The exponential function we proposed can approximate SSA and MACBC with BC/ΔCO, and when BC/ΔCO is small it can capture the rapid growth of SSA as BC/ΔCO decreases. BC/ΔCO is influenced by combustion conditions and aerosol scavenging. From the analysis of the location of BB, the primary source fuel, the water content in the fuel, combined with the mean cloud cover and precipitation in the transport areas of the BB plume, we conclude that the increase in BC/ΔCO from June to August is likely to be caused by burning becoming more flaming. The reduction in the water content of fuels may be responsible for the change in the burning conditions from June to August. The decrease in BC/ΔCO in September and October may be caused by two factors, one being a lower proportion of flaming conditions, possibly associated with a decrease in mean surface wind speed in the burning area, and the other being an increase in precipitation in the BB transport pathway, leading to enhanced aerosol scavenging, which ultimately results in an increase in SSA and MACBC.

54 ENVIRONMENTAL SCIENCES↗

A new data-driven map predicts substantial undocumented peatland areas in Amazonia

Tropical peatlands are among the most carbon-dense terrestrial ecosystems yet recorded. Collectively, they comprise a large but highly uncertain reservoir of the global carbon cycle, with wide-ranging estimates of their global area (441 025–1700 000 km 2 ) and below-ground carbon storage (105–288 Pg C). Substantial gaps remain in our understanding of peatland distribution in some key regions, including most of tropical South America. Here we compile 2413 ground reference points in and around Amazonian peatlands and use them alongside a stack of remote sensing products in a random forest model to generate the first field-data-driven model of peatland distribution across the Amazon basin. Our model predicts a total Amazonian peatland extent of 251 015 km 2 (95th percentile confidence interval: 128 671–373 359), greater than that of the Congo basin, but around 30% smaller than a recent model-derived estimate of peatland area across Amazonia. The model performs relatively well against point observations but spatial gaps in the ground reference dataset mean that model uncertainty remains high, particularly in parts of Brazil and Bolivia. For example, we predict significant peatland areas in northern Peru with relatively high confidence, while peatland areas in the Rio Negro basin and adjacent south-western Orinoco basin which have previously been predicted to hold Campinarana or white sand forests, are predicted with greater uncertainty. Similarly, we predict large areas of peatlands in Bolivia, surprisingly given the strong climatic seasonality found over most of the country. Very little field data exists with which to quantitatively assess the accuracy of our map in these regions. Data gaps such as these should be a high priority for new field sampling. This new map can facilitate future research into the vulnerability of peatlands to climate change and anthropogenic impacts, which is likely to vary spatially across the Amazon basin.

54 ENVIRONMENTAL SCIENCES↗

Predicted range expansion of Prostephanus truncatus (Coleoptera: Bostrichidae) under projected climate change scenarios

Abstract The larger grain borer (Prostephanus truncatus [Horn] [Coleoptera: Bostrichidae]) is a wood-boring insect native to Central America and adapted to stored maize and cassava. It was accidentally introduced to Tanzania and became a pest across central Africa. Unlike many grain pests, P. truncatus populations can establish and move within forests. Consequently, novel infestations can occur without human influence. The objectives of our study were to (i) develop an updated current suitability projection for P. truncatus, (ii) assess its potential future distribution under different climate change scenarios, and (iii) identify climate variables that best inform the model. We used WALLACE and MaxEnt to predict potential global distribution by incorporating bioclimatic variables and occurrence records. Future models were projected for 2050 and 2070 with Representative Concentration Pathways (RCPs) 2.6 (low change) and 8.5 (high change). Distribution was most limited by high precipitation and cold temperatures. Globally, highly suitable areas (> 75%) primarily occurred along coastal and equatorial regions with novel areas in northern South America, India, southeastern Asia, Indonesia, and the Philippines, totaling 7% under current conditions. Highly suitable areas at RCPs 2.6 and 8.5 are estimated to increase to 12% and 15%, respectively, by 2050 and increase to 19% in 2070 under RCP 8.5. Centroids of highly suitable areas show distribution centers moving more inshore and away from the equator. Notably, the result is a range expansion, not a shift. Results can be used to decrease biosecurity risks through more spatially explicit and timely surveillance programs for targeting the exclusion of this pest.

Entomology↗

The Amazonian Low-Level Jet and Its Connection to Convective Cloud Propagation and Evolution

In this work, we describe the existence of an Amazonian low-level jet (ALLJ) that can affect the propagation and life cycle of convective systems from the northeast coast of South America into central Amazonia. Horizontal winds from reanalysis were analyzed during March–April–May (MAM) of the two years (2014–15) of the GoAmazon2014/5 field campaign. Convective system tracking was performed using GOES-13 infrared imagery and classified into days with high and weak convective activity. The MAM average winds show a nocturnal enhancement of low-level winds starting near the coast in the early evening and reaching 1600 km inland by late morning. Mean 3-hourly wind speeds maximize at 9–10 m s -1 near 900 hPa, but individual days can have nighttime low-level winds exceeding 12 m s -1 . Based on objective low-level wind criteria, the ALLJ is present 10%–40% of the time over the Amazon during MAM depending on the location and time of day. The evolution of the ALLJ across the Amazon impacts the frequency of occurrence of cloud clusters and the intensity of the moisture flux. In addition, the ALLJ is associated with the enhancement of northeasterly flow in the midtroposphere during active convective days, when vertical momentum transport may be occurring in the organized cloud clusters. During the weakly active convective period, the ALLJ is weaker near the coast but stronger across the central Amazon and appears to be linked more directly with the South American low-level jet.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗