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At least 73 records · Page 4

An artificial spiking quantum neuron

Abstract Artificial spiking neural networks have found applications in areas where the temporal nature of activation offers an advantage, such as time series prediction and signal processing. To improve their efficiency, spiking architectures often run on custom-designed neuromorphic hardware, but, despite their attractive properties, these implementations have been limited to digital systems. We describe an artificial quantum spiking neuron that relies on the dynamical evolution of two easy to implement Hamiltonians and subsequent local measurements. The architecture allows exploiting complex amplitudes and back-action from measurements to influence the input. This approach to learning protocols is advantageous in the case where the input and output of the system are both quantum states. We demonstrate this through the classification of Bell pairs which can be seen as a certification protocol. Stacking the introduced elementary building blocks into larger networks combines the spatiotemporal features of a spiking neural network with the non-local quantum correlations across the graph.

Kristensen, Lasse Bjørn (ORCID:0000000239398170)↗

Global analysis of SBP gene family in Brachypodium distachyon reveals its association with spike development

SQUAMOSA-promoter binding like proteins (SBPs/SPLs) are plant specific transcription factors targeted by miR156 and involved in various biological pathways, playing multi-faceted developmental roles. This gene family is not well characterized in Brachypodium. We identified a total of 18 SBP genes in B. distachyon genome. Phylogenetic analysis revealed that SBP gene family in Brachypodium expanded through large scale duplication. A total of 10 BdSBP genes were identified as targets of miR156. Transcript cleavage analysis of selected BdSBPs by miR156 confirmed their antagonistic connection. Alternative splicing was observed playing an important role in BdSBPs and miR156 interaction. Characterization of T-DNA Bdsbp9 mutant showed reduced plant growth and spike length, reflecting its involvement in the spike development. Expression of a majority of BdSBPs elevated during spikelet initiation. Specifically, BdSBP1 and BdSBP3 differentially expressed in response to vernalization. Differential transcript abundance of BdSBP1, BdSBP3, BdSBP8, BdSBP9, BdSBP14, BdSBP18 and BdSBP23 genes was observed during the spike development under high temperature. Co-expression network, protein–protein interaction and biological pathway analysis indicate that BdSBP genes mainly regulate transcription, hormone, RNA and transport pathways. Our work reveals the multi-layered control of SBP genes and demonstrates their association with spike development and temperature sensitivity in Brachypodium.

59 BASIC BIOLOGICAL SCIENCES↗

Neutrino point source searches for dark matter spikes

Any dark matter spikes surrounding black holes in our Galaxy are sites of significant dark matter annihilation, leading to a potentially detectable neutrino signal. In this paper we examine 10-10 5 M ⊙ black holes associated with dark matter spikes that formed in early minihalos and still exist in our Milky Way Galaxy today, in light of neutrino data from the ANTARES and IceCube detectors. In various regions of the sky, we determine the minimum distance away from the solar system that a dark matter spike must be in order to have not been detected as a neutrino point source for a variety of representative dark matter annihilation channels. Given these constraints on the distribution of dark matter spikes in the Galaxy, we place significant limits on the formation of the first generation of stars in early minihalos — stronger than previous limits from gamma-ray searches in Fermi Gamma-Ray Space Telescope data. The larger black holes considered in this paper may arise as the remnants of Dark Stars after the dark matter fuel is exhausted; thus neutrino observations may be used to constrain the properties of Dark Stars. The limits are particularly strong for heavier WIMPs. For WIMP masses ~ 5TeV, we show that ≲ 10 % of minihalos can host first stars that collapse into BHs larger than 10 3 M ⊙ .

79 ASTRONOMY AND ASTROPHYSICS↗

Explaining Neural Spike Activity for Simulated Bio-plausible Network through Deep Sequence Learning

With significant improvements in large-scale simulations of brain models, there is a growing need to develop tools for rapid analysis and interpreting the simulation results. In this work, we explore the potential of sequential deep learning models to understand and explain the network dynamics among the neurons extracted from a large-scale neural simulation in STACS (Simulation Tool for Asynchronous Cortical Stream). Our method employs a representative neuroscience model that abstracts the cortical dynamics with a reservoir of randomly connected spiking neurons with a low stable spike firing rate throughout the simulation duration. We subsequently analyze the spike dynamics of the simulated spiking neural network through an autoencoder model and an attention-based mechanism.

Kulkarni, Shruti↗

Evolving Ensembles of Spiking Neural Networks for Neuromorphic Systems

Evolutionary algorithms have been proposed as a solution to overcome many of the challenges associated with training spiking neural networks. While evolutionary optimization for spiking neural networks is very flexible, its performance has difficulty scaling to complex tasks and correspondingly complex network structures. Here we propose a method for evolving ensembles of spiking neural networks. By using ensemble learning, the flexibility of evolutionary optimization is fully preserved while scaling to more challenging tasks. We test the performance of the proposed method using handwritten digit classification. We investigate multiple strategies for constructing ensembles of spiking neural networks, and demonstrate that evolving ensembles of SNNs offers significant performance advantages over evolutionary optimization.

Elbrecht, Daniel↗

An ultrapotent synthetic nanobody neutralizes SARS-CoV-2 by stabilizing inactive Spike

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus enters host cells via an interaction between its Spike protein and the host cell receptor angiotensin-converting enzyme 2 (ACE2). By screening a yeast surface-displayed library of synthetic nanobody sequences, we developed nanobodies that disrupt the interaction between Spike and ACE2. Cryo–electron microscopy (cryo-EM) revealed that one nanobody, Nb6, binds Spike in a fully inactive conformation with its receptor binding domains locked into their inaccessible down state, incapable of binding ACE2. Affinity maturation and structure-guided design of multivalency yielded a trivalent nanobody, mNb6-tri, with femtomolar affinity for Spike and picomolar neutralization of SARS-CoV-2 infection. mNb6-tri retains function after aerosolization, lyophilization, and heat treatment, which enables aerosol-mediated delivery of this potent neutralizer directly to the airway epithelia.

60 APPLIED LIFE SCIENCES↗

Effect of natural mutations of SARS-CoV-2 on spike structure, conformation, and antigenicity

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants with multiple spike mutations enable increased transmission and antibody resistance. We combined cryo–electron microscopy (cryo-EM), binding, and computational analyses to study variant spikes, including one that was involved in transmission between minks and humans, and others that originated and spread in human populations. All variants showed increased angiotensin-converting enzyme 2 (ACE2) receptor binding and increased propensity for receptor binding domain (RBD)–up states. While adaptation to mink resulted in spike destabilization, the B.1.1.7 (UK) spike balanced stabilizing and destabilizing mutations. A local destabilizing effect of the RBD E484K mutation was implicated in resistance of the B.1.1.28/P.1 (Brazil) and B.1.351 (South Africa) variants to neutralizing antibodies. Our studies revealed allosteric effects of mutations and mechanistic differences that drive either interspecies transmission or escape from antibody neutralization.

59 BASIC BIOLOGICAL SCIENCES↗

Design of a Robust Memristive Spiking Neuromorphic System with Unsupervised Learning in Hardware

Spiking neural networks (SNN) offer a power efficient, biologically plausible learning paradigm by encoding information into spikes. The discovery of the memristor has accelerated the progress of spiking neuromorphic systems, as the intrinsic plasticity of the device makes it an ideal candidate to mimic a biological synapse. Despite providing a nanoscale form factor, non-volatility, and low-power operation, memristors suffer from device-level non-idealities, which impact system-level performance. To address these issues, this article presents a memristive crossbar-based neuromorphic system using unsupervised learning with twin-memristor synapses, fully digital pulse width modulated spike-timing-dependent plasticity, and homeostasis neurons. Additionally, the implemented single-layer SNN was applied to a pattern-recognition task of classifying handwritten-digits. The performance of the system was analyzed by varying design parameters such as number of training epochs, neurons, and capacitors. Furthermore, the impact of memristor device non-idealities, such as device-switching mismatch, aging, failure, and process variations, were investigated and the resilience of the proposed system was demonstrated.

97 MATHEMATICS AND COMPUTING↗

The Promise of Mutation Resistant Drugs for SARS-CoV-2 That Interdict in the Folding of the Spike Protein Receptor Binding Domain

In recent work, we proposed that effective therapeutic drugs aimed at treating the SARS-CoV-2 infection could be developed based on interdicting in the early steps of the folding pathway of key viral proteins, including the receptor binding domain (RBD) of the spike protein. In order to provide for a drug target on the protein, the earliest contact-formation event along the dominant folding pathway of the RBD spike protein was predicted employing the Sequential Collapse Model (SCM). The segments involved in the predicted earliest contact were suggested to provide optimal folding interdiction target regions (FITRs) for potential therapeutic drugs, with a focus on folding interdicting peptides (FIPs). In this paper, we extend our analysis to include 13 known single mutations of the RBD spike protein as well as the triple mutation B1.351 and the recent double mutation B1.617.2. The results show that the location of the FITR does not change in any of the 15 studied mutations, providing for a mutation-resistant drug design strategy for the RBD-spike protein.

Bergasa-Caceres, Fernando↗

Gravitational Waves from Primordial Black Hole Dark Matter Spikes

The origin of the binary black hole mergers observed by LIGO–Virgo–KAGRA remains an open question. We calculate the merger rate from primordial black holes (PBHs) within the density spike around supermassive black holes (SMBHs) at the centers of galaxies. We show that the merger rate within the spike is comparable to that within the wider dark matter halo. We also calculate the extreme mass ratio inspiral (EMRI) signal from PBHs hosted within the density spike spiralling into their host SMBHs due to gravitational-wave emission. We predict that LISA may detect ∼10 4 of these EMRIs with a signal-to-noise ratio threshold of 20 within a 4 yr observation run, if all dark matter is made up of ∼30 M ⊙ PBHs. Uncertainties in our rates come from the uncertain mass fraction of PBHs within the dark matter spike, relative to the host central SMBHs, which defines the parameter space LISA can constrain.

dark matter↗

Local flow measurements at the inlet spike tip of a Mach 3 supersonic cruise airplane

The flow field at the left inlet spike tip of a YF-12A airplane was examined using at 26 deg included angle conical flow sensor to obtain measurements at free-stream Mach numbers from 1.6 to 3.0. Local flow angularity, Mach number, impact pressure, and mass flow were determined and compared with free-stream values. Local flow changes occurred at the same time as free-stream changes. The local flow usually approached the spike centerline from the upper outboard side because of spike cant and toe-in. Free-stream Mach number influenced the local flow angularity; as Mach number increased above 2.2, local angle of attack increased and local sideslip angle decreased. Local Mach number was generally 3 percent less than free-stream Mach number. Impact-pressure ratio and mass flow ratio increased as free-stream Mach number increased above 2.2, indicating a beneficial forebody compression effect. No degradation of the spike tip instrumentation was observed after more than 40 flights in the high-speed thermal environment encountered by the airplane. The sensor is rugged, simple, and sensitive to small flow changes. It can provide accurate imputs necessary to control an inlet.

Johnson, H. J.↗

Beading and spiking phenomena in the M551 metals melting experiment

A study was made regarding the beading and spiking phenomena observed in the M551 metals melting experiment conducted during the Skylab I mission in June 1973. An analysis was made of the beading phenomenon based on the Karman vortex shedding theory. The results tend to support the hypothesis that beading which occurred in the stainless and tantalum samples was a Karman vortex street formation. A dynamic model of cavity oscillation is discussed to explain the spiking phenomenon which was observed in the stainless steel and tantalum samples. Calculations of spiking frequency indicate that the intensity of spiking depends primarily on the vapor pressure and surface tension properties of the material, and is only slightly affected by the level of gravitation acceleration.

Fan, C.↗

Post-shock spikes - A new feature of proton and alpha enhancements associated with an interplanetary shock wave

Description of the salient characteristics of temporal variations of greater than or about equal to 100 keV/nucleon protons and alpha particles during a ten-hour period associated with the passage of an interplanetary shock wave. In addition to extending measurements to energies considerably below previous observations for energetic storm particle and shock-spike events, the discovery of a new low energy feature, referred to as 'postshock spikes', is reported. The typical width of these spikes is several minutes, but they occur several hours after the passage of the shock front. Evidence is presented that spikes depends on the energy per charge of the particles.

Gloeckler, G.↗

Voltage-spike analysis for a free-running parallel inverter

Unwanted and sometimes damaging high-amplitude voltage spikes occur during each half cycle in many transistor saturable-core inverters at the moment when the core saturates and the transistors switch. The analysis shows that spikes are an intrinsic characteristic of certain types of inverters even with negligible leakage inductance and purely resistive load. The small but unavoidable after-saturation inductance of the saturable-core transformer plays an essential role in creating these undesired thigh-voltage spikes. State-plane analysis provides insight into the complex interaction between core and transistors, and shows the circuit parameters upon which the magnitude of these spikes depends.

Lee, F. C. Y.↗

A model of the thermal-spike mechanism in graphite/epoxy laminates

The influence of a thermal spike on a moisture-saturated graphite/epoxy composite was studied in detail. A single thermal spike from 25 C to 132 C was found to produce damage as evidenced by a significant increase in the level of moisture saturation in the composite. Approximately half of this increase remained after a vacuum anneal at 150 C for 7 days, suggesting the presence of an irreversible damage component. Subsequent thermal spikes created less and less additional moisture absorption, with the cumulative effect being a maximum or limiting moisture capacity of the composite. These observations are explained in terms of a model previously developed to explain the reverse thermal effect of moisture absorption in epoxy and epoxy matrix composites. This model, based on the inverse temperature dependence of free volume, contributes an improved understanding of thermal-spike effects in graphite/epoxy composites.

Adamson, M. J.↗

A conceptual model of the thermal-spike mechanism in graphte/epoxy laminates

The influence of a thermal spike on a moisture-saturated graphite/epoxy composite was studied in detail. A single thermal spike from 25 to 132 C was found to produce damage, as evidenced by a significant increase in the level of moisture saturation in the composite. Approximately half of this increase remained after a vacuum-anneal at 150 C for seven days, suggesting the presence of an irreversible damage component. Subsequent thermal spikes created less and less additional moisture absorption, with the cumulative effect being a maximum or limiting moisture capacity of the composite. These observations are explained in terms of a model previously developed to explain the reverse thermal effect of moisture absorption in epoxy and epoxy-matrix composites. This model, based on the inverse temperature dependence of free volume, improves current understanding of thermal spike effects in graphite/epoxy composites.

Adamson, M. J.↗

Decimetric type III radio bursts and associated hard X-ray spikes

For a relatively weak solar flare on August 6, 1981, at 10:32 UT, a detailed comparison is made between hard X-ray spikes and decimetric type III radio bursts. The hard X-ray observations are made at energies above 30 keV, and the radio data are obtained in the frequency range from 100 to 1000 MHz. The time resolution for all the data sets is approximately 0.1 s or better. The dynamic radio spectrum exhibits many fast drift type III radio bursts with both normal and reverse slope, whereas the X-ray time profile contains many well resolved short spikes with durations less than or equal to 1 s. Some of the X-ray spikes are seen to be associated in time with reverse-slope bursts, indicating either that the electron beams producing the radio burst contain two or three orders of magnitude more fast electrons than has previously been assumed or that the electron beams can induce the acceleration of additional electrons or occur in coincidence with this acceleration. A case is presented in which a normal slope radio burst at approximately 600 MHz occurs in coincidence with the peak of an X-ray spike to within 0.1 s.

Dennis, B. R.↗

Temporal and spectral study of a newly discovered spiking phenomenon in the pre-eclipse and anomalous dip states of Hercules X-1

A new phenomenon has been detected in observations of Hercules X-1 at times consistent with the preeclipse and anomalous dips. The X-ray intensity does not drop for the duration of the dip but is punctuated by short spikes that appear to repeat with a period of approximately 108 minutes. Spectral fits during the on-state, the spike-state, and the low-state suggest a single, constant intrinsic source spectrum which becomes partially covered by an absorbing medium during the spike and low states. All three states can be fitted with the same flat power law between 1 and 20 keV with an absorber of varying covering fraction. Since the morphology and spectrum of the spikes are similar during both the preeclipse and the anomalous dips, and the possible 108 minute period is seen in both states, there is for the first time strong support for a common origin for the preeclipse and anomalous dips.

Vrtilek, S. D.↗