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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 73 records · Page 4

Extracellular matrix and cell shape: potential control points for inhibition of angiogenesis

Capillary endothelial (CE) cells require two extracellular signals in order to switch from quiescence to growth and back to differentiation during angiogenesis: soluble angiogenic factors and insoluble extracellular matrix (ECM) molecules. Soluble endothelial mitogens, such as basic fibroblast growth factor (FGF), act over large distances to trigger capillary growth, whereas ECM molecules act locally to modulate cell responsiveness to these soluble cues. Recent studies reveal that ECM molecules regulate CE cell growth and differentiation by modulating cell shape and by activating intracellular chemical signaling pathways inside the cell. Recognition of the importance of ECM and cell shape during capillary morphogenesis has led to the identification of a series of new angiogenesis inhibitors. Elucidation of the molecular mechanism of capillary regulation may result in development of even more potent angiogenesis modulators in the future.

Non-NASA Center↗

Gene Expression Dynamics Inspector (GEDI): for integrative analysis of expression profiles

Genome-wide expression profiles contain global patterns that evade visual detection in current gene clustering analysis. Here, a Gene Expression Dynamics Inspector (GEDI) is described that uses self-organizing maps to translate high-dimensional expression profiles of time courses or sample classes into animated, coherent and robust mosaics images. GEDI facilitates identification of interesting patterns of molecular activity simultaneously across gene, time and sample space without prior assumption of any structure in the data, and then permits the user to retrieve genes of interest. Important changes in genome-wide activities may be quickly identified based on 'Gestalt' recognition and hence, GEDI may be especially useful for non-specialist end users, such as physicians. AVAILABILITY: GEDI v1.0 is written in Matlab, and binary Matlab.dll files which require Matlab to run can be downloaded for free by academic institutions at http://www.chip.org/~ge/gedihome.html Supplementary information: http://www.chip.org/~ge/gedihome.html.

Database Management Systems↗

Feed status and skin injury modulate immunopathology, global gene expression, and survival in channel catfish during virulent Aeromonas hydrophila infection

Introduction VirulentAeromonas hydrophilais a major pathogen in channel catfish (Ictalurus punctatus), that causes motileAeromonassepticemia and significant economic losses. We investigated the effect of feeding status and skin integrity on the host immune response, disease survival, and gastrointestinal pathology following a vAh challenge. Methods Using a bath immersion model, channel catfish were divided into four treatment groups: fin clipped and fed (FCF), fin clipped but not fed (FCN), not fin clipped but fed (NCF), and not fin clipped nor fed (NCN) alongside non-challenged control groups The FCF and NCF groups were fed 2 h prior to the challenge, but the FCN and NCN groups were not. Survival analysis, histopathological assessment, and RNA sequencing were conducted across groups at different time intervals throughout the vAh challenge. Results Survival rates were lowest in the FCF and FCN groups (30% and 23% survival, respectively), suggesting that both feeding and skin damage contributed to disease severity. Histopathological analyses revealed more severe intestinal and gastric lesions in fed groups, characterized by epithelial necrosis, hemorrhage, and edema. Transcriptomic analysis among the groups identified significant differentially expressed genes associated with inflammation, apoptosis, and metabolic stress, with notable upregulation of interleukin 1-beta (il-1β), and complement C3 (c3). Gene ontology enrichment highlighted distinct immune activation patterns between fed and unfed groups, with enhanced pathogen recognition and pro-inflammatory responses in unfed fish. Discussion These findings suggest feeding prior to infection may exacerbate disease pathology, potentially by creating a physiological state conducive to facilitate pathogen proliferation and dampened early immune responses, whereas short-term fasting appears to promote early immune activation. This study provides novel insights into the complex interplay between feed status, physical injury, and immune response to vAh infection.

Immunology↗

The Statistical Mechanics of Solar Wind Hydroxylation at the Moon, Within Lunar Magnetic Anomalies, and at Phobos

We present a new formalism to describe the outgassing of hydrogen initially implanted by the solar wind protons into exposed soils on airless bodies. The formalism applies a statistical mechanics approach similar to that applied recently to molecular adsorption onto activated surfaces. The key element enabling this formalism is the recognition that the interatomic potential between the implanted H and regolith-residing oxides is not of singular value but possess a distribution of trapped energy values at a given temperature, F(U,T). All subsequent derivations of the outward diffusion and H retention rely on the specific properties of this distribution. We find that solar wind hydrogen can be retained if there are sites in the implantation layer with activation energy values exceeding 0.5eV. We especially examine the dependence of H retention applying characteristic energy values found previously for irradiated silica and mature lunar samples. We also apply the formalism to two cases that differ from the typical solar wind implantation at the Moon. First, we test for a case of implantation in magnetic anomaly regions where significantly lower-energy ions of solar wind origin are expected to be incident with the surface. In magnetic anomalies, H retention is found to be reduced due to the reduced ion flux and shallower depth of implantation. Second, we also apply the model to Phobos where the surface temperature range is not as extreme as the Moon. We find the H atom retention in this second case is higher than the lunar case due to the reduced thermal extremes (that reduces outgassing).

Solar Wind↗

Required attention for synthesized speech perception for three levels of linguistic redundancy

The study evaluates the attention required for synthesized speech perception with reference to three levels of linguistic redundancy. Twelve commercial airline pilots were individually tested for 16 cockpit warning messages eight of which consisted of two monosyllabic key words and eight of which consisted of two polysyllabic key words. Three levels of linguistic redundancy were identified: monosyllabic words, polysyllabic words, and sentences. The experiment contained a message familiarization phase and a message recognition phase. It was found that: (1) when the messages are part of a previously learned and recently heard set, and the subject is familiar with the phrasing, the attention needed to recognize the message is not a function of the level of linguistic redundancy, and (2) there is a quantitative and qualitative difference between recognition and comprehension processes; only in the case of active comprehension does additional redundancy reduce attention requirements.

Simpson, C. A.↗

Evaluation of a voice recognition system for the MOTAS pseudo pilot station function

The Langley Research Center has undertaken a technology development activity to provide a capability, the mission oriented terminal area simulation (MOTAS), wherein terminal area and aircraft systems studies can be performed. An experiment was conducted to evaluate state-of-the-art voice recognition technology and specifically, the Threshold 600 voice recognition system to serve as an aircraft control input device for the MOTAS pseudo pilot station function. The results of the experiment using ten subjects showed a recognition error of 3.67 percent for a 48-word vocabulary tested against a programmed vocabulary of 103 words. After the ten subjects retrained the Threshold 600 system for the words which were misrecognized or rejected, the recognition error decreased to 1.96 percent. The rejection rates for both cases were less than 0.70 percent. Based on the results of the experiment, voice recognition technology and specifically the Threshold 600 voice recognition system were chosen to fulfill this MOTAS function.

Houck, J. A.↗

Nucleic Acid-Based Detection Protease Activity

Proteases include clinically relevant markers for clotting disorders, certain cancers as well as toxins. Assays for protease activity often use designed peptides mimicking natural substrates and detection with colorometric and fluorescence-based detection that is difficult to multiplex without expensive and resource demanding instruments. This work demonstrates detection of proteolytic activity using PCR and sequencing-readable reporter molecules. The assay development focused on binding the constructed peptide-oligonucleotide chimera to immobilized streptavidin. Thrombin, an essential component of the clotting cascade, was used as a model system for testing peptide substrate recognition and release of a designed oligonucleotide for detection. Detection of protease activity was demonstrated in a concentration-dependent manner using MALDI-MS, RT-PCR and DNA sequencing.

Wunschel, David S [Pacific Northwest National Labo↗

Radar activities of the DFVLR Institute for Radio Frequency Technology

Aerospace research and the respective applications microwave tasks with respect to remote sensing, position finding and communication are discussed. The radar activities are directed at point targets, area targets and volume targets; they center around signature research for earth and ocean remote sensing, target recognition, reconnaissance and camouflage and imaging and area observation radar techniques (SAR and SLAR). The radar activities cover a frequency range from 1 GHz up to 94 GHz. The radar program is oriented to four possible application levels: ground, air, shuttle orbits and satellite orbits. Ground based studies and measurements, airborne scatterometers and imaging radars, a space shuttle radar, the MRSE, and follow on experiments are considered.

Keydel, W.↗

Long-term modifications of synaptic efficacy in the human inferior and middle temporal cortex

The primate temporal cortex has been demonstrated to play an important role in visual memory and pattern recognition. It is of particular interest to investigate whether activity-dependent modification of synaptic efficacy, a presumptive mechanism for learning and memory, is present in this cortical region. Here we address this issue by examining the induction of synaptic plasticity in surgically resected human inferior and middle temporal cortex. The results show that synaptic strength in the human temporal cortex could undergo bidirectional modifications, depending on the pattern of conditioning stimulation. High frequency stimulation (100 or 40 Hz) in layer IV induced long-term potentiation (LTP) of both intracellular excitatory postsynaptic potentials and evoked field potentials in layers II/III. The LTP induced by 100 Hz tetanus was blocked by 50-100 microM DL-2-amino-5-phosphonovaleric acid, suggesting that N-methyl-D-aspartate receptors were responsible for its induction. Long-term depression (LTD) was elicited by prolonged low frequency stimulation (1 Hz, 15 min). It was reduced, but not completely blocked, by DL-2-amino-5-phosphonovaleric acid, implying that some other mechanisms in addition to N-methyl-DL-aspartate receptors were involved in LTD induction. LTD was input-specific, i.e., low frequency stimulation of one pathway produced LTD of synaptic transmission in that pathway only. Finally, the LTP and LTD could reverse each other, suggesting that they can act cooperatively to modify the functional state of cortical network. These results suggest that LTP and LTD are possible mechanisms for the visual memory and pattern recognition functions performed in the human temporal cortex.

NASA Discipline Neuroscience↗

Functional anatomy of zinc finger antiviral protein complexes

Abstract ZAP is an antiviral protein that binds to and depletes viral RNA, which is often distinguished from vertebrate host RNA by its elevated CpG content. Two ZAP cofactors, TRIM25 and KHNYN, have activities that are poorly understood. Here, we show that functional interactions between ZAP, TRIM25 and KHNYN involve multiple domains of each protein, and that the ability of TRIM25 to multimerize via its RING domain augments ZAP activity and specificity. We show that KHNYN is an active nuclease that acts in a partly redundant manner with its homolog N4BP1. The ZAP N-terminal RNA binding domain constitutes a minimal core that is essential for antiviral complex activity, and we present a crystal structure of this domain that reveals contacts with the functionally required KHNYN C-terminal domain. These contacts are remote from the ZAP CpG binding site and would not interfere with RNA binding. Based on our dissection of ZAP, TRIM25 and KHNYN functional anatomy, we could design artificial chimeric antiviral proteins that reconstitute the antiviral function of the intact authentic proteins, but in the absence of protein domains that are otherwise required for activity. Together, these results suggest a model for the RNA recognition and action of ZAP-containing antiviral protein complexes.

Science & Technology - Other Topics↗

Field Geologic Observation and Sample Collection Strategies for Planetary Surface Exploration: Insights from the 2010 Desert RATS Geologist Crewmembers

Observation is the primary role of all field geologists, and geologic observations put into an evolving conceptual context will be the most important data stream that will be relayed to Earth during a planetary exploration mission. Sample collection is also an important planetary field activity, and its success is closely tied to the quality of contextual observations. To test protocols for doing effective planetary geologic field- work, the Desert RATS(Research and Technology Studies) project deployed two prototype rovers for two weeks of simulated exploratory traverses in the San Francisco volcanic field of northern Arizona. The authors of this paper represent the geologist crew members who participated in the 2010 field test.We document the procedures adopted for Desert RATS 2010 and report on our experiences regarding these protocols. Careful consideration must be made of various issues that impact the interplay between field geologic observations and sample collection, including time management; strategies relatedtoduplicationofsamplesandobservations;logisticalconstraintson the volume and mass of samples and the volume/transfer of data collected; and paradigms for evaluation of mission success. We find that the 2010 field protocols brought to light important aspects of each of these issues, and we recommend best practices and modifications to training and operational protocols to address them. Underlying our recommendations is the recognition that the capacity of the crew to flexibly execute their activities is paramount. Careful design of mission parameters, especially field geologic protocols, is critical for enabling the crews to successfully meet their science objectives.

Hurtado, Jose M., Jr.↗

Tools and Technologies Needed for Conducting Planetary Field Geology While On EVA: Insights from the 2010 Desert RATS Geologist Crewmembers

Observation is the primary role of all field geologists, and geologic observations put into an evolving conceptual context will be the most important data stream that will be relayed to Earth during a planetary exploration mission. Sample collection is also an important planetary field activity, and its success is closely tied to the quality of contextual observations. To test protocols for doing effective planetary geologic fieldwork, the Desert RATS (Research and Technology Studies) project deployed two prototype rovers for two weeks of simulated exploratory traverses in the San Francisco volcanic field of northern Arizona. The authors of this paper represent the geologist crewmembers who participated in the 2010 field test. We document the procedures adopted for Desert RATS 2010 and report on our experiences regarding these protocols. Careful consideration must be made of various issues that impact the interplay between field geologic observations and sample collection, including time management; strategies related to duplication of samples and observations; logistical constraints on the volume and mass of samples and the volume/transfer of data collected; and paradigms for evaluation of mission success. We find that the 2010 field protocols brought to light important aspects of each of these issues, and we recommend best practices and modifications to training and operational protocols to address them. Underlying our recommendations is the recognition that the capacity of the crew to "flexibly execute" their activities is paramount. Careful design of mission parameters, especially field geologic protocols, is critical for enabling the crews to successfully meet their science objectives.

Young, Kelsey↗

Structure of the Melajo clay near Arima, Trinidad and strike-slip motion in the El Pilar fault zone

No consensus has yet emerged on the sense, timing and amount of motion in the El Pilar fault zone. As a contribution to the study of this problem, a critical area within the zone in North Central Trinidad has been mapped. On the basis of the mapping, it is concluded that the El Pilar zone has been active in right-lateral strike-slip motion during the Pleistocene. Recognition of structural styles akin to those of the mapped area leads to the suggestion that the El Pilar zone is part of a 300 km wide plate boundary zone extending from the Orinoco delta northward to Grenada. Lateral motion of the Caribbean plate with respect to South America has been suggested to amount to 1900 km in the last 38 Ma. Part of this displacement since the Miocene can be readily accommodated within the broad zone identified here. No one fault system need account for more than a fraction of the total motion and all faults need not be active simultaneously.

Robertson, P.↗

Dynamics and activation of membrane-bound B cell receptor assembly

B-cell receptor (BCR) complexes are expressed on the surface of a B-cell and are critical in antigen recognition and modulating the adaptive immune response. Even though the relevance of antibodies has been known for almost a hundred years, the antigen-dependent activation mechanism of B-cells has remained elusive. Several models have been proposed for BCR activation, including cross-linking, conformation-induced oligomerization, and dissociation activation models. Recently, the first cryo-EM structures of the human B-cell antigen receptor of the IgM and IgG isotypes have been published that validates the asymmetric organization of the BCR complex. Here, we carry out extensive molecular dynamics simulations to probe the conformational changes upon antigen binding and the influence of the membrane lipids. We identify two critical dynamical events that could be associated with antigen-dependent activation of BCR. First, antigen binding causes increased flexibility in regions distal to the antigen binding site. Second, antigen binding alters the rearrangement of IgM transmembrane helices, including the relative interaction of Igα/Igβ that mediates intracellular signaling. Furthermore, these transmembrane rearrangements lead to changes in localized lipid composition. Our work indirectly supports the conformational-change induced models of BCR activation and contributes to the understanding of the antigen-dependent activation mechanism of BCRs.

59 BASIC BIOLOGICAL SCIENCES↗

Speech Acquisition and Automatic Speech Recognition for Integrated Spacesuit Audio Systems

A voice-command human-machine interface system has been developed for spacesuit extravehicular activity (EVA) missions. A multichannel acoustic signal processing method has been created for distant speech acquisition in noisy and reverberant environments. This technology reduces noise by exploiting differences in the statistical nature of signal (i.e., speech) and noise that exists in the spatial and temporal domains. As a result, the automatic speech recognition (ASR) accuracy can be improved to the level at which crewmembers would find the speech interface useful. The developed speech human/machine interface will enable both crewmember usability and operational efficiency. It can enjoy a fast rate of data/text entry, small overall size, and can be lightweight. In addition, this design will free the hands and eyes of a suited crewmember. The system components and steps include beam forming/multi-channel noise reduction, single-channel noise reduction, speech feature extraction, feature transformation and normalization, feature compression, model adaption, ASR HMM (Hidden Markov Model) training, and ASR decoding. A state-of-the-art phoneme recognizer can obtain an accuracy rate of 65 percent when the training and testing data are free of noise. When it is used in spacesuits, the rate drops to about 33 percent. With the developed microphone array speech-processing technologies, the performance is improved and the phoneme recognition accuracy rate rises to 44 percent. The recognizer can be further improved by combining the microphone array and HMM model adaptation techniques and using speech samples collected from inside spacesuits. In addition, arithmetic complexity models for the major HMMbased ASR components were developed. They can help real-time ASR system designers select proper tasks when in the face of constraints in computational resources.

Huang, Yiteng↗

Confronting Models with Data: The GEWEX Cloud Systems Study

The GEWEX Cloud System Study (GCSS; GEWEX is the Global Energy and Water Cycle Experiment) was organized to promote development of improved parameterizations of cloud systems for use in climate and numerical weather prediction models, with an emphasis on the climate applications. The strategy of GCSS is to use two distinct kinds of models to analyze and understand observations of the behavior of several different types of clouds systems. Cloud-system-resolving models (CSRMs) have high enough spatial and temporal resolutions to represent individual cloud elements, but cover a wide enough range of space and time scales to permit statistical analysis of simulated cloud systems. Results from CSRMs are compared with detailed observations, representing specific cases based on field experiments, and also with statistical composites obtained from satellite and meteorological analyses. Single-column models (SCMs) are the surgically extracted column physics of atmospheric general circulation models. SCMs are used to test cloud parameterizations in an un-coupled mode, by comparison with field data and statistical composites. In the original GCSS strategy, data is collected in various field programs and provided to the CSRM Community, which uses the data to "certify" the CSRMs as reliable tools for the simulation of particular cloud regimes, and then uses the CSRMs to develop parameterizations, which are provided to the GCM Community. We report here the results of a re-thinking of the scientific strategy of GCSS, which takes into account the practical issues that arise in confronting models with data. The main elements of the proposed new strategy are a more active role for the large-scale modeling community, and an explicit recognition of the importance of data integration.

Randall, David↗

Demonstrations of System-Level Autonomy for Spacecraft

System-level autonomy refers to autonomously meeting the crosscutting needs of a system through awareness and coordinated control spanning the system's breadth of capabilities. In contrast to function-level autonomy, which focuses on capabilities required to achieve a specific function such as surface navigation or image recognition, system-level autonomy addresses the needs to coordinate and manage activities and resources, and estimate the state, across subsystems. This paper describes demonstrations that were conducted on a spacecraft workstation testbed. The autonomy was provided by system-level planning and execution integrated with system-level estimators of orbit knowledge and spacecraft hardware health. These components are embedded in a system-level framework defining how goals are formed and executed, which elements exist, and how control authority is distributed among components. The planning and execution system at the heart of the framework has the capability to schedule, execute and monitor completion of tasks, as well as plan around unexpected events including new science opportunities and anomalies. The planning and scheduling system is the Multi-mission EXECutive (MEXEC), supported by the system-level health state estimator Model-Based Off-Nominal State Identification and Detection (MONSID), and Autonomous Navigation (AutoNav) algorithms, which determine the orbital system state based on optical observation of other targets. These components are applicable to many kinds of missions on different platforms. These demonstrations were elaborations of earlier experiments conducted on the ASTERIA (Arcsecond Space Telescope Enabling Research In Astrophysics) CubeSat, described in a companion submission [1]. The spacecraft’s extended mission served as an in-flight test platform, during which some individual autonomous capabilities were flown successfully. The autonomy experiments described here were performed on the ASTERIA workstation testbed.

Prather, Maurice↗