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NASA NTRS2010

Inferring Properties of Ancient Cyanobacteria from Biogeochemical Activity and Genomes of Siderophilic Cyanobacteria

Interrelationships between life and the planetary system could have simultaneously left landmarks in genomes of microbes and physicochemical signatures in the lithosphere. Verifying the links between genomic features in living organisms and the mineralized signatures generated by these organisms will help to reveal traces of life on Earth and beyond. Among contemporary environments, iron-depositing hot springs (IDHS) may represent one of the most appropriate natural models [1] for insights into ancient life since organisms may have originated on Earth and probably Mars in association with hydrothermal activity [2,3]. IDHS also seem to be appropriate models for studying certain biogeochemical processes that could have taken place in the late Archean and,-or early Paleoproterozoic eras [4, 5]. It has been suggested that inorganic polyphosphate (PPi), in chains of tens to hundreds of phosphate residues linked by high-energy bonds, is environmentally ubiquitous and abundant [6]. Cyanobacteria (CB) react to increased heavy metal concentrations and UV by enhanced generation of PPi bodies (PPB) [7], which are believed to be signatures of life [8]. However, the role of PPi in oxygenic prokaryotes for the suppression of oxidative stress induced by high Fe is poorly studied. Here we present preliminary results of a new mechanism of Fe mineralization in oxygenic prokaryotes, the effect of Fe on the generation of PPi bodies in CB, as well as preliminary analysis of the diversity and phylogeny of proteins involved in the prevention of oxidative stress in phototrophs inhabiting IDHS.

McKay, David S.↗

NASA NTRS2011

Quantifying Spatial and Seasonal Variability in Atmospheric Ammonia with In Situ and Space-Based Observations

Ammonia plays an important role in many biogeochemical processes, yet atmospheric mixing ratios are not well known. Recently, methods have been developed for retrieving NH3 from space-based observations, but they have not been compared to in situ measurements. We have conducted a field campaign combining co-located surface measurements and satellite special observations from the Tropospheric Emission Spectrometer (TES). Our study includes 25 surface monitoring sites spanning 350 km across eastern North Carolina, a region with large seasonal and spatial variability in NH3. From the TES spectra, we retrieve a NH3 representative volume mixing ratio (RVMR), and we restrict our analysis to times when the region of the atmosphere observed by TES is representative of the surface measurement. We find that the TES NH3 RVMR qualitatively captures the seasonal and spatial variability found in eastern North Carolina. Both surface measurements and TES NH3 show a strong correspondence with the number of livestock facilities within 10 km of the observation. Furthermore, we find that TES H3 RVMR captures the month-to-month variability present in the surface observations. The high correspondence with in situ measurements and vast spatial coverage make TES NH3 RVMR a valuable tool for understanding regional and global NH3 fluxes.

Pinder, Robert W.↗

NASA NTRS2011

Marine Microbial Mats and the Search for Evidence of Life in Deep Time and Space

Cyanobacterial mats in extensive seawater evaporation ponds at Guerrero Negro, Baja California, Mexico, have been excellent subjects for microbial ecology research. The studies reviewed here have documented the steep and rapidly changing environmental gradients experienced by mat microorganisms and the very high rates of biogeochemical processes that they maintained. Recent genetic studies have revealed an enormous diversity of bacteria as well as the spatial distribution of Bacteria, Archaea and Eukarya. These findings, together with emerging insights into the intimate interactions between these diverse populations, have contributed substantially to our understanding of the origins, environmental impacts, and biosignatures of photosynthetic microbial mats. The biosignatures (preservable cells, sedimentary fabrics, organic compounds, minerals, stable isotope patterns, etc.) potentially can serve as indicators of past life on early Earth. They also can inform our search for evidence of any life on Mars. Mars exploration has revealed evidence of evaporite deposits and thermal spring deposits; similar deposits on Earth once hosted ancient microbial mat ecosystems.

Des Marais, David J.↗

NASA NTRS2011

Are the World's Oceans Optically Different?

Regional differences in the Sea-viewing Wide Field-of-view Sensor chlorophyll algorithm uncertainty were observed in a large global data set containing coincident in situ measurements of chlorophyll a concentration (Chla) and spectral radiometry. The uncertainty was found to be systematic when the data were sorted by ocean: Atlantic, Pacific, Southern, and Indian Oceans. Artifacts associated with different instrumentation and analytical methods had been previously ruled out. Given these oceanic biases in the chlorophyll algorithm, we hypothesized that the oceans may be optically different, and their optical differences may be intrinsically related to regional differences in phytoplankton community structure or biogeochemical processes. The oceanic biases, originally observed using radiometric measurements, were independently verified using total absorption measurements in a subset of the data. Moreover, they were explained through oceanic differences in the absorption of colored detrital matter (CDM) and phytoplankton. Both effects were considered together in explaining the ocean biases through a stepwise linear regression analysis. Significant oceanic differences in the amount of CDM and in phytoplankton cell sizes and pigmentation would give rise to optical differences, but we raise a concern for the spatial coverage of the data. We do not suggest the application of ocean-based algorithms but rather emphasize the importance of consolidating regional data sets before reaching this conclusion.

Szeto, M.↗

NASA NTRS2016

Recent Progresses in Incorporating Human Land-Water Management into Global Land Surface Models Toward Their Integration into Earth System Models

The global water cycle has been profoundly affected by human land-water management. As the changes in the water cycle on land can affect the functioning of a wide range of biophysical and biogeochemical processes of the Earth system, it is essential to represent human land-water management in Earth system models (ESMs). During the recent past, noteworthy progress has been made in large-scale modeling of human impacts on the water cycle but sufficient advancements have not yet been made in integrating the newly developed schemes into ESMs. This study reviews the progresses made in incorporating human factors in large-scale hydrological models and their integration into ESMs. The study focuses primarily on the recent advancements and existing challenges in incorporating human impacts in global land surface models (LSMs) as a way forward to the development of ESMs with humans as integral components, but a brief review of global hydrological models (GHMs) is also provided. The study begins with the general overview of human impacts on the water cycle. Then, the algorithms currently employed to represent irrigation, reservoir operation, and groundwater pumping are discussed. Next, methodological deficiencies in current modeling approaches and existing challenges are identified. Furthermore, light is shed on the sources of uncertainties associated with model parameterizations, grid resolution, and datasets used for forcing and validation. Finally, representing human land-water management in LSMs is highlighted as an important research direction toward developing integrated models using ESM frameworks for the holistic study of human-water interactions within the Earths system.

biogeochemistry↗

NASA NTRS2017

Contribution of Sub-Mesoscales to the Vertical Velocity: The Omega-Equation

The oceans ability to regulate carbon dioxide depends on biogeochemical processes that are influenced strongly by eddies. Eddy-resolving simulations have shown that sub-mesoscales (SM) (110 km) generate the highest magnitude vertical velocity and that mesoscales (M) also enhance their contribution to the vertical velocity but to a lesser extent. In this study, we consider the question: can analogous results be obtained using the less numerically demanding -equation? Previously, this question has not been answered because of two reasons: 1) the canonical Hoskins form of the - equation does not include the buoyancy vertical fluxes caused by M and SM; and 2) Giordani et al. (2016) showed how to include an arbitrary vertical buoyancy flux, but no parameterizations were available for the M and SM vertical fluxes. How- ever, the latter are now available together with their assessments, so we consider SM because they make the largest contribution to the vertical velocity. The resulting vertical velocity depends on the extent of the SM regime, the horizontal buoyancy gradient (representing baroclinic instabilities), and the SM eddy kinetic energy. The vertical velocity depends in a linear manner on the wind stress and it may exhibit seasonal variations. The wind stress has two effects on the -equation: indirectly via its contribution to the sub-mesoscale buoyancy flux and directly through the wind stress itself. The results of our sensitivity analysis highlight the range of SM-induced vertical velocities obtained using different input data.

oceans↗

NASA NTRS2016

2016 International Land Model Benchmarking (ILAMB) Workshop Report

As earth system models (ESMs) become increasingly complex, there is a growing need for comprehensive and multi-faceted evaluation of model projections. To advance understanding of terrestrial biogeochemical processes and their interactions with hydrology and climate under conditions of increasing atmospheric carbon dioxide, new analysis methods are required that use observations to constrain model predictions, inform model development, and identify needed measurements and field experiments. Better representations of biogeochemistryclimate feedbacks and ecosystem processes in these models are essential for reducing the acknowledged substantial uncertainties in 21st century climate change projections.

earth system models (ESMs)↗

NASA NTRS2018

Multilayer Approach for Characterization of Bacterial Diversity in a Marginal Sea: From Surface to Seabed

Bacteria are the most important microorganisms in the world oceans, accounting for up to 75% of the total biomass. They are responsible for fundamental biogeochemical processes and therefore often used as ecological indicators. In this study, bacteria were quantified by flow cytometry and their diversity assessed by High Throughput Sequencing (HTS) in the southern Adriatic Sea. The most abundant bacterial groups were also quantified by qPCR. The samples were collected from the surface to the seabed over a total of 16 different depths at four stations during the late winter BIOTA (BIO-Tracing Adriatic water masses) cruise conducted in March 2016. The investigated area showed unusual water mass properties and was characterized by a shallow mixed layer, which differed from the usual winter convection conditions, typical of middle-altitude ecosystems and important for the seasonal picoplankton dynamics of this area. Heterotrophic bacteria were separated into HNA (relative High Nucleic Acid content) and LNA (Low Nucleic Acid content) subpopulations with abundances up to 1.8×10(exp 5) and 8.8×10(exp 5) cells/mL, respectively. HNA dominated at offshore stations reaching their maximum at depths below the euphotic zone. The bacterial community was dominated by Alphaproteobacteria, accounting for greater than 40% of the total sequence reads and were mainly represented by the SAR11 clade (90.84%), followed by Marinimicrobia (18% of the total sequence reads), mainly represented by clade SAR406 (8.44%). Distinctive bacterial groups were found in the euphotic layer (Bacteroidetes and Actinobacteria) and aphotic layer samples (Deltaproteobacteria, Marinimicrobia, Chloroflexi, Acidobacteria and Planctomycetes). Results of the qPCR analyses further confirmed HTS results with highest abundances obtained for Alphaproteobacteria, followed by Gammaproteobacteria and Bacteroidetes. The adopted multiple approach, combining different molecular tools, critically supported by optics and flow cytometry, reveal changes in the bacterial assemblages during the unusual thermohaline conditions observed in 2016 in the southern Adriatic Sea.

Southern Adriatic Sea↗

NASA NTRS2019

Deriving High-Resolution Reservoir Bathymetry from ICESat-2 Prototype Photon-Counting Lidar and Landsat Imagery

Knowledge of reservoir bathymetry is essential for many studies on terrestrial hydrological and biogeochemical processes. However, there are currently no cost-effective approaches to derive reservoir bathymetry at the global scale. This study explores the potential of generating high-resolution global bathymetry using elevation data collected by the 532-nm Advanced Topographic Laser Altimeter System (ATLAS) onboard the Ice, Cloud, and Land Elevation Satellite (ICESat-2). The novel algorithm was developed and tested using the ICESat-2 airborne prototype, the Multiple Altimeter Beam Experimental Lidar (MABEL), with Landsat-based water classifications (from 1982 to 2017). MABEL photon elevations were paired with Landsat water occurrence percentiles to establish the elevation-area (E-A) relationship, which in turn was applied to the percentile image to obtain partial bathymetry over the historic dynamic range of reservoir area. The bathymetry for the central area was projected to achieve the full bathymetry. The bathymetry image was then embedded onto the digital elevation model (DEM). Results were validated over Lake Mead against survey data. Results over four transects show coefficient of determination (R²) values from 0.82 to 0.99 and root-mean-square error (RMSE) values from 1.18 to 2.36 m. In addition, the E-A and elevation-storage (E-S) curves have RMSEs of 1.56 m and 0.08 km³, respectively. Over the entire dynamic reservoir area, the derived bathymetry agrees very well with independent survey data, except for within the highest and lowest percentile bands. With abundant overpassing tracks and high spatial resolution, the newly launched ICESat-2 should enable the derivation of bathymetry over an unprecedented number of reservoirs.

Yao Li↗

NASA NTRS2018

Northern Hemisphere Surface Freeze-Thaw Product from Aquarius L-Band Radiometers

In the Northern Hemisphere, seasonal changes in surface freeze–thaw (FT) cycles are an important component of surface energy, hydrological and eco-biogeochemical processes that must be accurately monitored. This paper presents the weekly polar-gridded Aquarius passive L-band surface freeze–thaw product (FT-AP) distributed on the Equal-Area Scalable Earth Grid version 2.0, above the parallel 50 N, with a spatial resolution of 36 km36 km. The FT-AP classification algorithm is based on a seasonal threshold approach using the normalized polarization ratio, references for frozen and thawed conditions and optimized thresholds. To evaluate the uncertainties of the product, we compared it with another satellite FT product also derived from passive microwave observations but at higher frequency: the resampled 37 GHz FT Earth Science Data Record (FTESDR). The assessment was carried out during the overlapping period between 2011 and 2014. Results show that 77.1% of their common grid cells have an agreement better than 80 %. Their differences vary with land cover type (tundra, forest and open land) and freezing and thawing periods. The best agreement is obtained during the thawing transition and over forest areas, with differences between product mean freeze or thaw onsets of under 0.4 weeks. Over tundra, FT-AP tends to detect freeze onset 2–5 weeks earlier than FT-ESDR, likely due to FT sensitivity to the different frequencies used. Analysis with mean surface air temperature time series from six in situ meteorological stations shows that the main discrepancies between FT-AP and FT-ESDR are related to false frozen retrievals in summer for some regions with FT-AP. The Aquarius product is distributed by the U.S. National Snow and Ice Data Center (NSIDC) at https://nsidc.org/data/aq3_ft/versions/5 with the DOI https://doi.org/10.5067/OV4R18NL3BQR.

Prince, Michael↗

NASA NTRS2019

Microbial Mats and the Search for Their Biosignatures in Deep Time and Space

Des Marais, David J.↗

NASA NTRS2020

Searching for Evidence of Life in Deep Time and Space

Cyanobacterial mats provide insights into ancient benthic microbial communities and their biosignatures. Thick mats occupy hypersaline saltern ponds at Guerrero Negro, Baja California, Mexico. Mat biota maintains rapid rates of biogeochemical processes under steep and rapidly changing environmental gradients. Cycling of C, O, and S all increased identically with temperature, indicating the tight coupling of these cycles. An enormous microbial diversity exhibits a highly structured spatial distribution of populations. Combined universal clone libraries from all mat layers indicated Bacteria/Archaea/Eukarya ratios of 57:7:1. More than 10,000 unique bacterial sequences were present. The relative abundance of Archaea increased with depth - below 10 cm, solvent-extractable archaeal lipids were twice as abundant as bacterial lipids. Only 15 species of Eukarya were found among 890 clones analyzed. Degradation of the mats’ insoluble macromolecular organic fraction (IMOM) by hydropyrolysis released a complex variety of linear, branched and polycyclic alkane structures, e.g., hopanes, methylhopanes and steranes. Covalent binding of these biosignatures into IMOM aids their long-term geological preservation. Mars rover missions revealed evidence of long-lived fluvial lacustrine systems and organics in associated mudstones. NASA’s Mars 2020 rover mission will examine sediments in Jezero crater, including a delta and shoreline carbonate deposits, environments that on Earth have sustained microbial mats.

Des Marais, David J.↗

NASA NTRS2021

Plant Phenology Evaluation of CRESCENDO Land Surface Models–Part 1: Start and End of the Growing Season

Plant phenology plays a fundamental role in land–atmosphere interactions, and its variability and variations are an indicator of climate and environmental changes. For this reason, current land surface models include phenology parameterizations and related biophysical and biogeochemical processes. In this work, the climatology of the beginning and end of the growing season, simulated by the land component of seven state-of-the-art European Earth system models participating in the CMIP6, is evaluated globally against satellite observations. The assessment is performed using the vegetation metric leaf area index and a recently developed approach, named four growing season types. On average, the land surface models show a 0.6-month delay in the growing season start, while they are about 0.5 months earlier in the growing season end. The difference with observation tends to be higher in the Southern Hemisphere compared to the Northern Hemisphere. High agreement between land surface models and observations is exhibited in areas dominated by broadleaf deciduous trees, while high variability is noted in regions dominated by broadleaf deciduous shrubs. Generally, the timing of the growing season end is accurately simulated in about 25 % of global land grid points versus 16 % in the timing of growing season start. The refinement of phenology parameterization can lead to better representation of vegetation-related energy, water, and carbon cycles in land surface models, but plant phenology is also affected by plant physiology and soil hydrology processes. Consequently, phenology representation and, in general, vegetation modelling is a complex task, which still needs further improvement, evaluation, and multi-model comparison.

Phenology↗

NASA NTRS2021

One- and Two-Band Sensors and Algorithms to Derive aCDOM(440) from Global Above- and In-Water Optical Observations

The colored (or chromophoric, depending on the literature) dissolved organic matter (CDOM) spectral absorption coefficient, aCDOM(λ), is a variable of global interest that has broad application in the study of biogeochemical processes. Within the funding for scientific research, there is an overarching trend towards increasing the scale of observations both temporally and spatially, while simultaneously reducing the cost per sample, driving a systemic shift towards autonomous sensors and observations. Legacy aCDOM(λ) measurement techniques can be cost-prohibitive and do not lend themselves toward autonomous systems. Spectrally rich datasets carefully collected with advanced optical systems in diverse locations that span a global range of water bodies, in conjunction with appropriate quality assurance and processing, allow for the analysis of methods and algorithms to estimate aCDOM(440) from spectrally constrained one- and two-band subsets of the data. The resulting algorithms were evaluated with respect to established fit-for-purpose criteria as well as quality assured archival data. Existing and proposed optical sensors capable of exploiting the algorithms and intended for autonomous platforms are identified and discussed. One-band in-water algorithms and two-band above-water algorithms showed the most promise for practical use (accuracy of 3.0% and 6.5%, respectively), with the latter demonstrated for an airborne dataset.

ocean color↗

NASA NTRSDate not supplied

Investigation of Coupled Land-Atmosphere Carbon Dynamics and Seasonal Carbon Forecast Skill

In this talk, I will present recent efforts to explore coupled land-atmosphere carbon dynamics and carbon cycle predictability. First, the impact of a regional drought on land and atmospheric carbon was studied by imposing an idealized spring drought in coupled land‐atmosphere ensemble simulations. Through drought-induced impact on remote meteorology, the drought alters land’s productivity not only in the drought area but also in the adjacent areas. The atmospheric CO2 anomalies extend to an area up to three times of that of the imposed drought, which suggests that atmospheric transport needs to be considered in the interpretation of drought‐induced carbon anomalies. Increase in column‐averaged monthly CO2 by the imposed drought is at the edge of the uncertainty from single soundings of current greenhouse gas observing satellites. Secondly, the seasonal carbon forecast skill was explored using NASA’s subseasonal-to-seasonal (S2S) ensemble forecast and a terrestrial biosphere model. The result demonstrates an ability to accurately predict spring-summer carbon uptake at multi-month leads in the Northern Hemisphere mid- and high latitude land. The skill appears to be achieved by accurate forecasts of snow removal timing as well as proper initialization of carbon and nitrogen states. Additionally, I will briefly discuss other ongoing research activities to improve hydrometeorological prediction by integrating biogeochemical processes, to evaluate forecast skill of wildfire, and to apply subseasonal forecasts to water resources management.

Eunjee Lee↗

NASA NTRSDate not supplied

Exploring Coupled Land-Atmosphere Carbon Dynamics and Seasonal Carbon Forecast Skill

Terrestrial biosphere is an integral part of the climate system and plays a vital role in controlling the dynamics of the Earth’s carbon cycle. In this talk, I will present recent efforts to explore coupled land-atmosphere carbon dynamics and seasonal carbon cycle predictability. First, by imposing an idealized spring drought in coupled land‐atmosphere ensemble simulations, we investigated the impact of a regional drought on land and atmospheric carbon. Through the drought-induced impact on remote meteorology, the capability of the land’s carbon uptake is altered in both the drought area and the adjacent areas. The induced anomalies of the atmospheric CO2 extend to an area up to three times of that of the imposed drought, which suggests that atmospheric transport needs to be considered in the interpretation of the drought impact on carbon anomalies. Increase in column‐averaged monthly CO2 is at the edge of the uncertainty from single soundings of current greenhouse gas observing satellites. Secondly, the seasonal carbon forecast skill was explored using NASA’s subseasonal-to-seasonal (S2S) ensemble forecast and terrestrial biosphere model. The result demonstrates an ability to accurately predict spring-summer carbon uptake in the Northern Hemisphere mid and high latitude land at multi-month leads. The prediction skill appears to be achieved by accurate forecasts of snow removal timing, which provides a latent predictability to the forecast system, and by proper initialization of carbon and nitrogen states. Additionally, I will briefly discuss other ongoing research to improve hydrometeorological prediction by integrating biogeochemical processes, to evaluate forecast skill of wildfire carbon, and to apply subseasonal forecasts to water resources management.

Eunjee Lee↗

NASA NTRS2022

Arctic Biogeochemical and Optical Properties of Dissolved Organic Matter Across River to Sea Gradients

Arctic landscapes are warming and becoming wetter due to changes in precipitation and the timing of snowmelt which consequently alters seasonal runoff and river discharge patterns. These changes in hydrology lead to increased mobilization and transport of terrestrial dissolved organic matter (DOM) to Arctic coastal seas where significant impacts on biogeochemical cycling can occur. Here, we present measurements of dissolved organic carbon (DOC) and chromophoric DOM (CDOM) in the Yukon River-to-Bering Sea system and two river plumes on the Alaska North Slope which flow into the Beaufort Sea. Our sampling characterized optical and biogeochemical properties of DOM during high and low river discharge periods for the Yukon River-Bering Sea system. The average DOC concentration at the multiple Yukon River mouths ranged from a high of 10.36 mg C L-1 during the ascending limb of the 2019 freshet (late May), 6.4 mg C L-1 during the descending limb of the 2019 freshet (late June), and a low of 3.86 mg C L-1 during low river discharge in August 2018. CDOM absorption coefficient at 412 nm (aCDOM(412)) averaged 8.23 m-1, 5.07 m-1, and 1.9 m-1, respectively. Several approaches to model DOC concentration based on its relationship with CDOM properties demonstrated cross-system seasonal and spatial robustness for these Arctic coastal systems despite spanning an order of magnitude decrease in DOC concentration from the lower Yukon River to the Northern Bering Sea as well as the North Slope systems. “Snapshot” fluxes of DOC and CDOM across the Yukon River Delta to Norton Sound were calculated from our measurements and modeled water fluxes forced with upstream USGS river gauge data. Our findings suggest that during high river flow, DOM reaches the delta largely unaltered by inputs or physical and biogeochemical processing and that the transformations of Yukon River DOM largely occur in the plume. However, during low summer discharge, multiple processes including local precipitation events, microbial decomposition, photochemistry, and likely others can alter the DOM properties within the lower Yukon River and Delta prior to flowing into Norton Sound.

Arctic↗

NASA NTRS2022

Channel Water Storage Anomaly: A New Remotely Sensed Quantity for Global River Analysis

River channels store large volumes of water globally, critically impacting ecological and biogeochemical processes. Despite the importance of river channel storage, there is not yet an observational constraint on this quantity. We introduce a 26-year record of entirely remotely sensed volumetric channel water storage (CWS) change on 26 major world rivers. We find mainstem volumetric CWS climatology amplitude (CA) represents an appreciable amount of basin-wide terrestrial water storage variability (median 2.78%, range 0.04%–12.54% across world rivers), despite mainstem rivers themselves represent an average of just 0.2% of basin area. We find that two global river routing schemes coupled with land surface models reasonably approximate CA (within ±50%) in only 11.5% (CaMa-Flood) and 30.7% (HyMap) of rivers considered. These findings demonstrate volumetric CWS is a useful quantity for assessing global hydrological model performance, and for advancing understanding of spatial patterns in global hydrology.

Stephen Coss↗