From Minutes to Seasons: An Overview of Predictions of Carbon Flux and Concentrations over North America
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Carbon Flux↗
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Toward Integrated Seasonal Predictions of Carbon Flux: Lessons Learned from NASA’s Subseasonal-to-Seasonal Predictions
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ENSO↗
Modeling Riverine Dissolved and Particulate Organic Carbon Fluxes from Two Small Watersheds in the Northeastern United States
The coupled carbon (C) cycle across terrestrial and aquatic environments at the watershed scale has been identified as an important, but poorly constrained component of the global carbon budget. Here, we extended Soil and Water Assessment Tool (SWAT) with coupled riverine particulate organic carbon (POC) and dissolved organic carbon (DOC) modules (referred to as SWAT-C hereafter). Results show that SWAT-C reproduced daily POC and DOC fluxes well in two watersheds in the Northeastern United States. We found that SWAT-C tended to underestimate high flows and peak DOC and POC fluxes. Uncertainty analysis indicated flux uncertainties associated with POC and DOC simulation were larger than those for flow simulation. Sensitive parameters controlling POC and DOC biogeochemical processes were identified along with how these parameters influence mechanisms underlying C cycling. We anticipate that the tool developed and applied here will inform C related ecosystem services in watershed assessment and planning.
Dissolved organic carbon, Particulate organic carb↗
Evaluating Northern Hemisphere Growing Season Net Carbon Flux in Climate Models Using Aircraft Observations
Understanding terrestrial ecosystems and their response to anthropogenic climate change requires quantification of land-atmosphere carbon exchange. However, top-down and bottom-up estimates of large-scale land-atmosphere fluxes, including the northern extratropical growing season net flux (GSNF), show significant discrepancies. We developed a data-driven metric for the GSNF using atmospheric carbon dioxide concentration observations collected during the High-Performance Instrumented Airborne Platform for Environmental Research Pole-to-Pole Observations and Atmospheric Tomography Mission flight campaigns. This aircraft-derived metric is bias-corrected using three independent atmospheric inversion systems. We estimate the northern extratropical GSNF to be 5.7 ± 0.3 Pg C and use it to evaluate net biosphere productivity from the Coupled Model Intercomparison Project phase 5 and 6 (CMIP5 and CMIP6) models. While the model-to-model spread in the GSNF has decreased in the CMIP6 models relative to that of the CMIP5 models, there is still disagreement on the magnitude and timing of seasonal carbon uptake with most models underestimating the GSNF and overestimating the length of the growing season relative to the observations. We also use an emergent constraint approach to estimate annual northern extratropical gross primary productivity to be 56 ± 17 Pg C, heterotrophic respiration to be 25 ± 13 Pg C, and net primary productivity to be 28 ± 12 Pg C. The flux inferred from these aircraft observations provides an additional constraint on large-scale gross fluxes in prognostic Earth system models that may ultimately improve our ability to accurately predict carbon-climate feedbacks.
54 ENVIRONMENTAL SCIENCES↗
Bias-Correcting Carbon Fluxes Derived From Land-Surface Satellite Data for Retrospective and Near Real-Time Assimilation Systems
The ability to monitor and understand natural and anthropogenic variability in atmospheric carbon dioxide(CO2) is a growing need of many stakeholders across the world. Systems that assimilate satellite observations, given their short latency and dense spatial coverage, into high resolution global models are valuable, if not essential, tools for addressing this need. A notable drawback of modern assimilation systems is the long latency of many vital in-put datasets, e.g., inventories, in situ measurements, and re-processed remote-sensing data can trail the current date by months to years. This paper describes techniques for bias-correcting surface fluxes derived from satellite observations of the Earth’s surface to be consistent with constraints from inventories and in situ CO2 datasets. The techniques are applicable in both short-term forecasts and retrospective simulations, thus taking advantage of the coverage and short latency of satellite data while reproducing the major features of long-term inventory and in situ records. Our approach begins with a standard collection of diagnostic fluxes which incorporate a variety of remote-sensing driver data, viz. vegetation indices, fire radiative power, and nighttime lights. We then apply an empirical sink so that global budgets of the diagnostic fluxes match given atmospheric and oceanic growth rates for each year. This step removes coherent, systematic flux errors that produce biases inCO2which mask the signals an assimilation system hopes to capture. Depending on the simulation mode, the empirical sink uses different choices of atmospheric growth rates: estimates based on observations in retrospective mode and projections based on seasonal fore-casts of sea surface temperature in forecasting mode. The retrospective fluxes, when used in simulations with NASA’s Goddard Earth Observing System (GEOS), reproduce marine boundary layer measurements with comparable skill to those using fluxes from a modern inversion system. The forecasted fluxes show promising accuracy in their application to the analysis of changes in the carbon cycle as they occur.
CO2↗
A Systems Approach to Increasing Carbon Flux to Seed Oil for Biofuels and Bioproducts Production in Camelina sativa (Final Report)
To combat climate change and alleviate the dependency of the United States on fossil fuels, the transition to biofuel crops has long been proposed as a crucial part of the long-term solution. Camelina sativa has emerged as one of the leading commercially viable options for biofuel and bioproduct production for the U.S. Camelina has the advantages of low agronomic inputs and natural resistance to diverse biotic and abiotic stresses relative to other oilseed crops, and Camelina oil-based blends have been tested and approved as liquid transportation fuels. A major limitation in the widespread adoption of Camelina as a viable industrial oilseed crop is its modest oil yields. This project directly investigated possible paths towards increasing oil, by employing tissue-specific and whole plant systems approaches to identify major regulatory bottlenecks. We developed a new high-throughput method for the identification of multi-gene transformants in polyploid species like Camelina sativa and used this to determine that, contrary to what mathematical models suggested, introduction of the microbial Entner-Doudoroff (ED) pathway into Camelina sativa did not result in significant seed oil increases. We developed flux maps providing accurate and statistically robust models of central carbon metabolism in Camelina, including of cultured Camelina embryos. This knowledge was used in the capacitation of a number of junior researchers in gaining knowledge on approaches used for quantitative flux map analyses. We identified several novel Camelina transcription factor genes regulating fatty acid biosynthesis that showed variable effects on seed oil accumulation in transgenic plants. Among a number of community resources, we also developed a knowledge base web resource (CamRegBase) to integrate Camelina gene regulatory information. Together, research outcomes from this project have contributed to a much better understanding of the regulation and bottlenecks to engineer seed oil production in Camelina.
09 BIOMASS FUELS↗
Refining water and carbon fluxes modeling in terrestrial ecosystems via plant hydraulics integration
Plant hydraulics substantially affects terrestrial water and carbon cycles by modulating water transport and carbon assimilation. Despite improved drought simulations in certain ecosystems through their integration into land surface models (LSMs), the broader application of plant hydraulics in diverse ecosystems and hydroclimates is still underexplored. Here, in this study, we implemented the recently developed Noah-Multiparameterization Land Surface Model (Noah-MP LSM) equipped with a plant hydraulics scheme (Noah-MP-PHS) across 40 FLUXNET sites globally. Employing the Shuffled Complex Evolution-University of Arizona (SCE-UA) auto-calibration algorithm, we optimized key plant hydraulics parameters for these sites spanning eight vegetation types in both arid and humid climates. Noah-MP-PHS significantly improves the simulation of evapotranspiration (ET) and gross primary production (GPP) by better representing atmospheric and soil water stress compared to traditional soil hydraulic schemes (SHSs, such as Noah and CLM). The augmented Noah-MP-PHS models reduce surface flux overestimation and underestimation, exhibiting an average increase of 0.14 and 0.15 in Kling-Gupta Efficiency (KGE) compared to Noah and CLM, respectively. The explicit consideration of plant capacitance in PHS reveals substantial deep-layer and nocturnal root water uptake especially under dry conditions. We employed eXplainable Machine learning (XML) to quantify the model’s relative sensitivity to newly introduced leaf-, stem and root-related parameters in PHS. The sensitivity analysis reveals a rise in root parameter importance and a decline in leaf and stem parameters as conditions shift from humid to arid. These findings indicate that as aridity states vary, the most influential parameters affecting surface fluxes variation may change in parameter calibration for PHS applications. Our findings underscore the importance of incorporating plant hydraulics into LSMs to enhance simulations of terrestrial water and carbon dynamics. These findings are crucial for understanding ecosystem responses to global climate changes and guide the broader application of PHS at larger scales.
54 ENVIRONMENTAL SCIENCES↗
Multi-property modeling of ocean basin carbon fluxes
The objectives of this project were to elucidate the causal mechanisms in some of the most important features of the global ocean/atomsphere carbon system. These included the interaction of physical and biological processes in the seasonal cycle of surface water pCo2, and links between productivity, surface chlorophyll, and the carbon cycle that would aid global modeling efforts. In addition, several other areas of critical scientific interest involving links between the marine biosphere and the global carbon cycle were successfully pursued; specifically, a possible relation between phytoplankton emitted DMS and climate, and a relation between the location of calcium carbonate burial in the ocean and metamorphic source fluxes of CO2 to the atmosphere. Six published papers covering the following topics are summarized: (1) Mass extinctions, atmospheric sulphur and climatic warming at the K/T boundary; (2) Sensitivity of climate and atmospheric CO2 to deep-ocean and shallow-ocean carbonate burial; (3) Controls on CO2 sources and sinks in the earthscale surface ocean; (4) pre-anthropogenic, earthscale patterns of delta pCO2 between ocean and atmosphere; (5) Effect on atmospheric CO2 from seasonal variations in the high latitude ocean; and (6) Limitations or relating ocean surface chlorophyll to productivity.
Volk, Tyler↗
High-frequency Data Integration for Landscape Model Calibration of Carbon Fluxes Across Diverse Tidal Marshes
Terrestrial Aquatic Interfaces (TAIs), and tidal wetlands in particular, store large amounts of carbon yet are not well represented in Earth System Models (ESMs). Predictions of carbon cycling and greenhouse gas (GHG) emissions in tidal wetlands are highly uncertain. Eddy covariance (EC) towers provide ecosystem-scale GHG flux data at a temporal resolution (every 30min) that is helpful for parameterizing and improving mechanistic realism in ESMs. We propose to use a network of eddy covariance towers and standardized ancillary data streams, along with mesocosm experiments and statistical analyses, across diverse tidal wetlands of North America to develop and improve biogeochemical modeling at the TAI. Our overarching objective is to improve understanding and process-based modeling of gross primary productivity (GPP) and CH4 emission responses, both non-linear and asynchronous, to stressors including plant inundation, disturbance, salinity and nitrogen loading.
54 ENVIRONMENTAL SCIENCES↗
Microbial community composition controls carbon flux across litter types in early phase of litter decomposition
Leaf litter decomposition is a major carbon input to soil, making it a target for increasing soil carbon storage through microbiome engineering. We expand upon previous findings to show with multiple leaf litter types that microbial composition can drive variation in carbon flow from litter decomposition and specific microbial community features are associated with synonymous patterns of carbon flow among litter types. Although plant litter type selects for different decomposer communities, within a litter type, microbial composition drives variation in the quantity of dissolved organic carbon (DOC) measured at the end of the decomposition period. Bacterial richness was negatively correlated with DOC quantity, supporting our hypothesis that across multiple litter types there are common microbial traits linked to carbon flow patterns. Variation in DOC abundance (i.e. high versus low DOC) driven by microbial composition is tentatively due to differences in bacterial metabolism of labile compounds, rather than catabolism of non-labile substrates such as lignin. The temporal asynchrony of metabolic processes across litter types may be a substantial impediment to discovering more microbial features common to synonymous patterns of carbon flow among litters. Overall, our findings support the concept that carbon flow may be programmed by manipulating microbial community composition.
59 BASIC BIOLOGICAL SCIENCES↗
Modeling microbial carbon fluxes and stocks in global soils from 1901 to 2016
Abstract. Soil microbes play a crucial role in the carbon (C) cycle; however, they have been overlooked in predicting the terrestrial C cycle. We applied a microbial-explicit Earth system model – the Community Land Model-Microbe (CLM-Microbe) – to investigate the dynamics of soil microbes during 1901 to 2016. The CLM-Microbe model was able to reproduce the variations of gross (GPP) and net (NPP) primary productivity, heterotrophic (HR) and soil (SR) respiration, microbial (MBC) biomass C in fungi (FBC) and bacteria (BBC) in the top 30 cm and 1 m, and dissolved (DOC) and soil organic C (SOC) in the top 30 cm and 1 m during 1901–2016. During the study period, simulated C variables increased by approximately 12 PgC yr−1 for HR, 25 PgC yr−1 for SR, 1.0 PgC for FBC and 0.4 PgC for BBC in 0–30 cm, and 1.2 PgC for FBC and 0.7 PgC for BBC in 0–1 m. Increases in microbial C fluxes and pools were widely found, particularly at high latitudes and in equatorial regions, but we also observed their decreases in some grids. Overall, the area-weighted averages of HR, SR, FBC, and BBC in the top 1 m were significantly correlated with those of soil moisture and soil temperature in the top 1 m. These results suggested that microbial C fluxes and pools were jointly governed by vegetation C input and soil temperature and moisture. Our simulations revealed the spatial and temporal patterns of microbial C fluxes and pools in response to environmental change, laying the foundation for an improved understanding of soil microbial roles in the global terrestrial C cycle.
He, Liyuan↗
Data for Physiological Controls on Carbon Fluxes and Biomass Production in Miscanthus: Insights From a Process- Based Agroecosystem Model
Biomass crops serve as essential feedstocks for renewable energy and bioproducts and play a critical role in achieving lower emissions in the transportation sector. However, dedicated perennial biomass crops such as Miscanthus × giganteus (Miscanthus) remain underrepresented in process- based agroecosystem models, limiting robust evaluation of their economic and environmental performance. In this study, we developed a data- constrained representation of the sterile triploid Miscanthus (IL clone) within the process- based model ecosys, integrating global sensitivity analysis, ensemble simulation, and parameter calibration. Planting, harvesting, and fertilization practices consistent with field management were incorporated, and phenology was constrained using PhenoCam- derived Green Chromatic Coordinate (GCC) data. Using the Morris global sensitivity analysis method, we identified 11 key physiological parameters governing plant carbon, water, and nutrient relations, particularly processes associated with CO2 assimilation. We then conducted ensemble simulations by perturbing these parameters and calibrated the model against eddy covariance fluxes and field- measured biomass. Building on the calibrated operating state, parameter- response analyses show that different photosynthetic processes influence productivity in different ways. Protein allocation determines whether productivity increases toward a higher level, whereas electron transport capacity controls additional gains once protein allocation approaches saturation. These findings demonstrate that parameter importance depends on physiological context and on which photosynthetic processes remain limiting. Calibration and validation against observations show that ecosys can reliably reproduce carbon and water fluxes, as well as both above- and belowground biomass, with post- calibration GPP R2 improving from 0.67 to 0.95 during the calibration period and remaining high during validation (R2 = 0.95). These results provide a mechanistic foundation for regional simulations and sustainable bioenergy assessments.
Carbon↗
Physiological Controls on Carbon Fluxes and Biomass Production in Miscanthus: Insights From a Process‐Based Agroecosystem Model
Biomass crops serve as essential feedstocks for renewable energy and bioproducts and play a critical role in achieving lower emissions in the transportation sector. However, dedicated perennial biomass crops such as Miscanthus × giganteus (Miscanthus) remain underrepresented in process-based agroecosystem models, limiting robust evaluation of their economic and environmental performance. In this study, we developed a data-constrained representation of the sterile triploid Miscanthus (IL clone) within the process-based model ecosys, integrating global sensitivity analysis, ensemble simulation, and parameter calibration. Planting, harvesting, and fertilization practices consistent with field management were incorporated, and phenology was constrained using PhenoCam-derived Green Chromatic Coordinate (GCC) data. Using the Morris global sensitivity analysis method, we identified 11 key physiological parameters governing plant carbon, water, and nutrient relations, particularly processes associated with CO 2 assimilation. We then conducted ensemble simulations by perturbing these parameters and calibrated the model against eddy covariance fluxes and field-measured biomass. Building on the calibrated operating state, parameter-response analyses show that different photosynthetic processes influence productivity in different ways. Protein allocation determines whether productivity increases toward a higher level, whereas electron transport capacity controls additional gains once protein allocation approaches saturation. These findings demonstrate that parameter importance depends on physiological context and on which photosynthetic processes remain limiting. Calibration and validation against observations show that ecosys can reliably reproduce carbon and water fluxes, as well as both above- and belowground biomass, with post-calibration GPP R 2 improving from 0.67 to 0.95 during the calibration period and remaining high during validation (R 2 = 0.95). These results provide a mechanistic foundation for regional simulations and sustainable bioenergy assessments.
ecosys↗
Estuarine Dissolved Organic Carbon Flux From Space: With Application to Chesapeake and Delaware Bays
This study uses a neural network model trained with in situ data, combined with satellite data and hydrodynamic model products, to compute the daily estuarine export of dissolved organic carbon (DOC) at the mouths of Chesapeake Bay (CB) and Delaware Bay (DB) from 2007 to 2011. Both bays show large flux variability with highest fluxes in spring and lowest in fall as well as interannual flux variability (0.18 and 0.27 Tg C/year in 2008 and 2010 for CB; 0.04 and 0.09 Tg C/year in 2008 and 2011 for DB). Based on previous estimates of total organic carbon (TOCexp) exported by all Mid-Atlantic Bight estuaries (1.2 Tg C/year), the DOC export (CB + DB) of 0.3 Tg C/year estimated here corresponds to 25% of the TOCexp. Spatial and temporal covariations of velocity and DOC concentration provide contributions to the flux, with larger spatial influence. Differences in the discharge of fresh water into the bays (74 billion cu. m/year for CB and 21 billion cu. m/year for DB) and their geomorphologies are major drivers of the differences in DOC fluxes for these two systems. Terrestrial DOC inputs are similar to the export of DOC at the bay mouths at annual and longer time scales but diverge significantly at shorter time scales (days to months). Future efforts will expand to the Mid-Atlantic Bight and Gulf of Maine, and its major rivers and estuaries, in combination with coupled terrestrial-estuarine-ocean biogeochemical models that include effects of climate change, such as warming and CO2 increase.
Estuarine DOC export↗
Estuarine Dissolved Organic Carbon Flux from Space: With Application to Chesapeake and Delaware Bays
This study uses a neural network model trained with in situ data, combined with satellite data and hydrodynamic model products, to compute the daily estuarine export of dissolved organic carbon (DOC) at the mouths of Chesapeake Bay (CB) and Delaware Bay (DB) from 2007 to 2011. Both bays show large flux variability with highest fluxes in spring and lowest in fall as well as interannual flux variability (0.18 and 0.27 Tg C/year in 2008 and 2010 for CB; 0.04 and 0.09 Tg C/year in 2008 and 2011 for DB). Based on previous estimates of total organic carbon (TOCexp) exported by all Mid-Atlantic Bight estuaries (1.2 Tg C/year), the DOC export (CB + DB) of 0.3 Tg C/year estimated here corresponds to 25% of the TOCexp. Spatial and temporal covariations of velocity and DOC concentration provide contributions to the flux, with larger spatial influence. Differences in the discharge of fresh water into the bays (74 billion m(exp3)/year for CB and 21 billion m9exp3)/year for DB) and their geomorphologies are major drivers of the differences in DOC fluxes for these two systems. Terrestrial DOC inputs are similar to the export of DOC at the bay mouths at annual and longer time scales but diverge significantly at shorter time scales (days to months). Future efforts will expand to the Mid-Atlantic Bight and Gulf of Maine, and its major rivers and estuaries, in combination with coupled terrestrial-estuarine-ocean biogeochemical models that include effects of climate change, such as warming and CO2 increase.
Signorini, Sergio↗
Carbon Fluxes and Microbial Activities From Boreal Peatlands Experiencing Permafrost Thaw
Permafrost thaw is occurring in Alaska which may result in a positive feedback to climate warming, due to the release of greenhouse gases such as CO 2 and CH 4 from soils. Here we examined greenhouse gas production along a gradient of “time since thaw,” hypothesizing that fluxes and microbial activities would be highest soon after thaw, and then decline. We observed highest rates of microbial activities, particularly methanogenesis, soon after thaw, coinciding with less decomposed organic matter and higher concentrations of dissolved carbon and nitrogen in soil, possibly of permafrost origin. However, field fluxes were higher in the young thaw site, compared to the older sites, in winter and not summer, a phenomenon that is currently not well understood.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Ocean Carbon Flux, Transport, and Burial Within the Western and Eastern US Coastal Zones
This project has been to develop and apply a regional. eddy-resolving circulation and biogeochemistry model of both the western and eastern U.S. coastal regions, capable of simulating the processes that control the carbon cycle. Validation has been by statistical comparison with analyses from various satellite measurements, including those from EOS sensors, as well as from in situ measurements. Sensitivity studies were carried out to investigate how the coastal ecosystem and biogeochemical cycles respond to changes in climate, large-scale eutrophication from indus- trial pollution, and other anthropogenic induced changes. The research has been conducted in collaboration with research groups at UCLA. NASA/GSFC (Wallops), Rutgers, and SIO. Overall. the project was focused on several key modeling issues, each of which tie back into completing the primary task of developing a coastal carbon model for both the eastern and western US. coasts. Individual groups within the entire program are still collaborating to address these specific tasks. These include: implementation of the coupled circulation/biogeochemical model within the U.S. West Coast. including high-resolution, embedded subdomains for the Southern California Bight and Monterey Bay region; development of a biogeochemical model with resolved carbon, nitrogen and oxygen cycles; development of data assimilation techniques for use of satellite data sets; reconfiguration of the model domain to U.S. East Coast; development of coastal forcing fields: development of methods to compare the model against remotely sensed data; and, the test of model sensitivity to environmental conditions. Below, we present a summary of the progress made toward achieving these soak. Because this has been a multi-institutional, collaborative effort, we note the groups involved with particular activities.
McWilliams, James C.↗
Dynamic regulation of water potential in Juniperus osteosperma mediates ecosystem carbon fluxes
Summary Some plants exhibit dynamic hydraulic regulation, in which the strictness of hydraulic regulation (i.e. iso/anisohydry) changes in response to environmental conditions. However, the environmental controls over iso/anisohydry and the implications of flexible hydraulic regulation for plant productivity remain unknown. InJuniperus osteosperma, a drought‐resistant dryland conifer, we collected a 5‐month growing season time series ofin situ, high temporal‐resolution plant water potential () and stand gross primary productivity (GPP). We quantified the stringency of hydraulic regulation associated with environmental covariates and evaluated how predawn water potential contributes to empirically predicting carbon uptake. Juniperus osteospermashowed less stringent hydraulic regulation (more anisohydric) after monsoon precipitation pulses, when soil moisture and atmospheric demand were high, and corresponded with GPP pulses. Predawn water potential matched the timing of GPP fluxes and improved estimates of GPP more strongly than soil and/or atmospheric moisture, notably resolving GPP underestimation before vegetation green‐up. Flexible hydraulic regulation appears to allowJ. osteospermato prolong soil water extraction and, therefore, the period of high carbon uptake following monsoon precipitation pulses. Water potential and its dynamic regulation may account for why process‐based and empirical models commonly underestimate the magnitude and temporal variability of dryland GPP.
Plant Sciences↗