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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 73 records · Page 4
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Moab Desert Crust - Sample 4E

Uncultivated Bacteria and Archaea comprise the vast majority of species on Earth, but obtaining their genomes directly from the environment, using shotgun sequencing, has only recently become possible. To realize the hope of capturing Earth’s microbial genetic complement, technologies that accelerate recovery of high-quality genomes are necessary. We present a series of analysis steps and data products for the extraction of high quality metagenome-assembled genomes (MAGs) from microbiomes using the U.S. Department of Energy Systems Biology Knowledgebase (KBase) platform (http://www.kbase.us/). In KBase, the process is end-to-end, allowing a user to go from the initial sequencing reads all the way through to MAG genomes, which can then be analyzed with other KBase capabilities such as phylogenetic placement, functional assignment, metabolic modeling, pangenome functional profiling, RNA-Seq, and others. While portions of such capabilities are individually available from other resources, the combination of the intuitive usability, data interoperability, and integration of tools in a freely available compute resource makes KBase a uniquely powerful platform for obtaining MAGs from microbiomes. While this workflow offers tools for each of the key steps in the genome extraction process, it also provides a scaffold that can be easily extended, with additional MAG recovery and analysis tools, via the KBase SDK (Software Development Kit).

Chivian, Dylan↗
NASA NTRS2022

A Novel Machine Learning-Based Gap-Filling of Fine-Resolution Remotely Sensed Snow Cover Fraction Data By Combining Downscaling and Regression

Satellite-based remotely sensed observations of snow cover fraction (SCF) can have data gaps in spatially distributed coverage from sensor and orbital limitations. We mitigate these limitations in the example fine-resolution Moderate Resolution Imaging Spectroradiometer (MODIS) data by gap-filling using auxiliary 1-km datasets that either aid in downscaling from coarser-resolution (5 km) MODIS SCF wherever not fully covered by clouds, or else by themselves via regression wherever fully cloud covered. This study’s prototype predicts a 1-km version of the 500-m MOD10A1 SCF target. Due to noncollocatedness of spatial gaps even across input and auxiliary datasets, we consider a recent gap-agnostic advancement of partial convolution in computer vision for both training and predictive gap-filling. Partial convolution accommodates spatially consistent gaps across the input images, effectively implementing a two-dimensional masking. To overcome reduced usable data from noncollocated spatial gaps across inputs, we innovate a fully generalized three-dimensional masking in this partial convolution. This enables a valid output value at a pixel even if only a single valid input variable and its value exist in the neighborhood covered by the convolutional filter zone centered around that pixel. Thus, our gap-agnostic technique can use significantly more examples for training (∼67%) and prediction (∼100%), instead of only less than 10% for the previous partial convolution. We train an example simple three-layer legacy super-resolution convolutional neural network (SRCNN) to obtain downscaling and regression component performances that are better than baseline values of either climatology or MOD10C1 SCF as relevant. Our generalized partial convolution can enable multiple Earth science applications like downscaling, regression, classification, and segmentation that were hindered by data gaps.

Soni Yatheendradas↗
DOE OSTI2022

Metagenome-assembled genome extraction and analysis from microbiomes using KBase

Uncultivated Bacteria and Archaea account for the vast majority of species on Earth, but obtaining their genomes directly from the environment, using shotgun sequencing, has only become possible recently. In order to realize the hope of capturing Earth’s microbial genetic complement and to facilitate the investigation of the functional roles of specific lineages in a given ecosystem, technologies that accelerate the recovery of high-quality genomes are necessary. We present a series of analysis steps and data products for the extraction of high-quality metagenome-assembled genomes (MAGs) from microbiomes using the U.S. Department of Energy Systems Biology Knowledgebase (KBase) platform (http://www.kbase.us/). Overall, these steps take about a day to obtain extracted genomes when starting from smaller environmental shotgun read libraries, or up to about a week from larger libraries. In KBase, the process is end-to-end, allowing a user to go from the initial sequencing reads all the way through to MAGs, which can then be analyzed with other KBase capabilities such as phylogenetic placement, functional assignment, metabolic modeling, pangenome functional profiling, RNA-Seq and others. While portions of such capabilities are available individually from other resources, the combination of the intuitive usability, data interoperability and integration of tools in a freely available computational resource makes KBase a powerful platform for obtaining MAGs from microbiomes. While this workflow offers tools for each of the key steps in the genome extraction process, it also provides a scaffold that can be easily extended with additional MAG recovery and analysis tools, via the KBase software development kit (SDK).

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Dry in-pile fracture test (DRIFT) for separate-effects validation of ceramic fuel fracture models

Fracture is an important component of nuclear fuel behavior, and significant efforts have been invested into developing fuel performance models that are capable of accurately representing fracture. Usable data on the process of fracture propagation in nuclear fuel under realistic service conditions are very limited. To address this need, a series of separate-effects experiments were developed and performed at Idaho National Laboratory's Transient Reactor Test (TREAT) facility. These experiments employ a heat sink to radially remove heat from the fuel in a manner that approximates the effect of coolant in an operating light-water reactor (LWR). The test holder for these experiments is known as the Dry In-pile Fracture Test (DRIFT). A series of experiments employing DRIFT and TREAT were performed to provide data on the extent and nature of fracture in fresh fuel at various points during a ramp to full power. Novel aspects of these experiments include the way they employ a heat sink to replicate steady-state LWR conditions, as well as the use of fiber optic sensors for in-reactor thermal instrumentation. Details on the development of this experiment, experimental conditions, and resulting data (including in situ thermal measurements and post-irradiation imaging of fracture) are provided in this work. LWR-equivalent powers ranging from 10 to 25 kW/m were tested using this apparatus. Cracking was visible at all power levels, with increasing cracking extent as the power level increased, although there was little difference in the cracking between the two highest-power tests, which had LWR-equivalent powers of 20 and 25 kW/m.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2024

Bragg Spot Finder (BSF): a new machine-learning-aided approach to deal with spot finding for rapidly filtering diffraction pattern images

Macromolecular crystallography contributes significantly to understanding diseases and, more importantly, how to treat them by providing atomic resolution 3D structures of proteins. This is achieved by collecting X-ray diffraction images of protein crystals from important biological pathways. Spotfinders are used to detect the presence of crystals with usable data, and the spots from such crystals are the primary data used to solve the relevant structures. Having fast and accurate spot finding is essential, but recent advances in synchrotron beamlines used to generate X-ray diffraction images have brought us to the limits of what the best existing spotfinders can do. This bottleneck must be removed so spotfinder software can keep pace with the X-ray beamline hardware improvements and be able to see the weak or diffuse spots required to solve the most challenging problems encountered when working with diffraction images. In this paper, we first present Bragg Spot Detection (BSD), a large benchmark Bragg spot image dataset that contains 304 images with more than 66 000 spots. We then discuss the open source extensible U-Net-based spotfinder Bragg Spot Finder (BSF), with image pre-processing, a U-Net segmentation backbone, and post-processing that includes artifact removal and watershed segmentation. Finally, we perform experiments on the BSD benchmark and obtain results that are (in terms of accuracy) comparable to or better than those obtained with two popular spotfinder software packages ( Dozor and DIALS ), demonstrating that this is an appropriate framework to support future extensions and improvements.

36 MATERIALS SCIENCE↗
DOE OSTI2021

FEST: Facility Energy Saving and Securing Technology Using Multi-Source Data: (Milestone 2 Report)

This project aims to demonstrate three technologies developed in-house at LLNL and University of Michigan-Dearborn (UMD), at a military site, including i) Grid Data Crossing (called GriD-Xing) for increasing smart meter data usability, ii) Facility Energy Optimization (called Facility E-GO) for improving facility energy efficiency in both operation and planning perspectives, and iii) Co-simulation tool (called Co-Sim) for enhancing smart meter and energy facility networks resilience and security. In this report, Millstone 2 - Integration A: Integrate GriD-Xing and facility optimization tools is documented.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
DOE OSTI2024

On a Simplified Approach to Achieve Parallel Performance and Portability Across CPU and GPU Architectures

This paper presents software advances to easily exploit computer architectures consisting of a multi-core CPU and CPU+GPU to accelerate diverse types of high-performance computing (HPC) applications using a single code implementation. The paper describes and demonstrates the performance of the open-source C++ matrix and array (MATAR) library that uniquely offers: (1) a straightforward syntax for programming productivity, (2) usable data structures for data-oriented programming (DOP) for performance, and (3) a simple interface to the open-source C++ Kokkos library for portability and memory management across CPUs and GPUs. The portability across architectures with a single code implementation is achieved by automatically switching between diverse fine-grained parallelism backends (e.g., CUDA, HIP, OpenMP, pthreads, etc.) at compile time. The MATAR library solves many longstanding challenges associated with easily writing software that can run in parallel on any computer architecture. This work benefits projects seeking to write new C++ codes while also addressing the challenges of quickly making existing Fortran codes performant and portable over modern computer architectures with minimal syntactical changes from Fortran to C++. We demonstrate the feasibility of readily writing new C++ codes and modernizing existing codes with MATAR to be performant, parallel, and portable across diverse computer architectures.

97 MATHEMATICS AND COMPUTING↗
NASA NTRS1972

In-flight aeroacoustic environments on prospective space shuttle vehicles

The problem of in-flight aerodynamic noise has been studied by reliable estimates of full scale surface-pressure fluctuations from scale model tests in wind tunnels. Scaling relationships have been verified, and many details of the fluctuating pressure characteristics such as spatial correlation and convection velocities are understood. The effects of the wind tunnel environmental turbulence and noise have also been investigated sufficiently so that threshold levels of usable data are known.

Dods, J. B., Jr.↗
NASA NTRS1973

U.S. view of human problems to be addressed for long duration space flights

The Russian and American space programs have consisted of several thousands of hours of exposure of man to the space environment. In spite of numerous biological phenomena of adaptation observed, the space travellers have displayed, after their return, no enduring pathological effect. Although the usable data remain too limited to reflect fully the effects of space flight, it is possible to sketch the biological responses in the absence of gravity and to define the work bases for the future. Beyond its basic physiological effects, weightlessness has operational consequences in the daily life of the astronauts. These consequences will be still more evident during missions of long duration. The conclusions drawn in flight as well as on the ground are reviewed, and future requirements concerning prolonged flights are outlined. The gaps in actual knowledge are discussed and solutions are suggested. The problems of habitability are considered, particularly those which remain at present without satisfactory solutions: psychological responses to a confined life, cleaning, hygiene, and used material.

Berry, C. A.↗
NASA NTRS1976

Interstellar helium flow experiment MA-088

The Apollo Soyuz Test Project Interstellar Helium Glow Experiment (MA-088) studied the motion of helium in the local interstellar medium as that medium passed through the solar system to determine several poorly known properties of the local interstellar gas. The instrument used was a photometer sensitive to two solar extreme ultraviolet spectral lines that are resonantly scattered by helium gas. The instrument surveyed the entire celestial sphere during a series of slow, rolling maneuvers by the Apollo spacecraft. The equipment operated properly, and usable data were obtained.

Bowyer, S.↗
NASA NTRS1977

Extreme ultraviolet photometer for observations of helium in interplanetary space

A four-channel photometer sensitive to two solar EUV lines which are resonantly scattered by helium gas was developed for flight on the Apollo-Soyuz Test Project. Two channels observed the 58.4-nm line of He I and used helium gas resonant absorption cells to determine the intensities of the center and wings of that line. The other two channels observed the 30.4-nm line of He II. The instrument surveyed much of the celestial sphere during a series of slow rolling maneuvers by the Apollo spacecraft. The experiment operated properly, and usable data were obtained. Study of the distributions of flux seen, and of the ratio 58.4-nm fluxes seen with gas cells full and empty, will refine current understanding of several poorly known properties of the local interstellar medium. Study of the 30.4-nm flux distribution will refine present knowledge of the structure of the earth's plasmasphere.

Bowyer, S.↗
NASA NTRS1980

Observations of interstellar helium with a gas absorption cell - Implications for the structure of the local interstellar medium

A photometer sensitive at the 584 A line of He 1, incorporating a helium gas resonance absorption cell, was flown on the Apollo-Soyuz Test Project in July 1975. The instrument observed much of the night-time sky, and returned 42 min of usable data. The data were analyzed by fitting to a model of resonant scattering of solar 584 A flux from nearby interstellar helium. Good model fits were obtained for an interstellar gas bulk velocity vector pointing toward alpha = 72 deg, delta = +15 deg, with speed 20 km/s, with interstellar medium temperatures from 5000 to 20,000 K and with neutral interstellar helium density (8.9 plus or minus 10 to the -3rd/cu cm). In the context of theoretical studies of the interstellar medium by McKee and Ostriker (1977), the results may indicate that the sun lies in the warm, partially ionized periphery of a cold interstellar cloud, surrounded by a high-temperature gas heated by old supernova remnants.

Freeman, J.↗
NASA NTRS1988

Ocean Drifter Project

Four drifting buoys were fabricated from mostly local hardware plus animal locating transmitters. The first two working models were dropped from a Wallops aircraft, to test the mechanical integrity and to test the ability of the whole system to withstand the drop and provide usable data. There are two temperature sensors on board, one to measure sea surface temperature and the other to measure air temperature. An onboard computer controls the transmissions, sending three water temperature readings for each air temperature reading in order to differentiate one from the other after data reduction. Guidelines for the development and test of optical drifting buoys include: air deployable and expendable, reasonable cost for multiple deployment, 1 year lifetime, use of existing technology and a minimal validation parameter set.

Mason, C. D.↗
NASA NTRS1992

Multifrequency passive microwave observations of soil moisture in an arid rangeland environment

A cooperative experiment was conducted by teams from the U.S. and U.S.S.R. to evaluate passive microwave instruments and algorithms used to estimate surface soil moisture. Experiments were conducted as part of an interdisciplinary experiment in an arid rangeland watershed located in the southwest United States. Soviet microwave radiometers operating at wavelengths of 2.25, 21 and 27 cm were flown on a U.S. aircraft. Radio frequency interference limited usable data to the 2.25 and 21 cm systems. Data have been calibrated and compared to ground observations of soil moisture. These analyses showed that the 21 cm system could produce reliable and useful soil moisture information and that the 2.25 cm system was of no value for soil moisture estimation in this experiment.

Jackson, T. J.↗
NASA NTRS1995

Measurements of electromagnetic bias at Ku and C bands

The electromagnetic (EM) bias epsilon is an error present in radar altimetry of the ocean surface due to nonuniform reflection with surface displacement. The electromagnetic bias is defined as the difference in height between the mean reflecting surface and the mean sea surface. A knowledge of the electromagnetic bias is required for reducing errors in mean sea level measurements by satellite radar altimeters. Direct measurements of the EM bias at 14 GHz (Ku band) and 5 GHz (C band) were made from an oil production platform in the Gulf of Mexico over a 6-month period during 1989 and 1990. A total of 1280 hours of usable data was collected. During the experiment the significant wave height (SWH) varied from 0.6 to 3.2 m; the wind speed at 25 m above the surface varied from 0.1 to 14.3 m/s; the Ku band bias varied from -1.0 to -13.8 cm, or from -1.6% to -5.3% of the SWH; and the C band bias varied from -0.4 to -19.9 cm, or from -0.6% to -6.3% of the SWH. The biases has mean values of -3.7% and -3.6% of SWH with standard deviations of the variability about the mean of 0.7% and 1.0% of the SWH for Ku and C bands, respectively. We found a nonlinear relationship between dimensionless bias (bias/SWH) and wind speed at both low and high wind speeds. For wind speeds less than 3-4 m/s but less than 10 m/s, both biases were found to increase linearly with wind speed. For wind speeds greater than 11-12 m/s, the C band bias reaches a maximum. The Ku band bias reaches a maximum and then begins to decrease for wind speeds greater than 9-10 m/s.

Arnold, D. V.↗
NASA NTRS1996

Studies of Vestibular Neurons in Normal, Hyper- and Hypogravity

During the past year, pre-, in- and postflight studies were conducted in association with the Axon project for Bion 10 (Cosmos 2229). Recordings were made during pre- and postflight studies, from 118 horizontal semicircular canal afferents and 27 vestibular nucleus neurons in 7 rhesus monkeys; 137 pulse rotation protocols alone were executed (548 acceleration and deceleration responses were curve fit). Usable data was obtained from 127 horizontal afferents concerning their spontaneous discharge. Curve fits and analysis was made of sinusoidal and sum of sinusoidal responses from 42 and 35 horizontal afferents, respectively. Also recordings were made from neurons inflight from the two flight animals. The mean spontaneous rate varied from 128 spikes/sec. during preflight to 92 spikes/sec during postflight (day 5) - a change of 28%. In direct contrast to the results of Cosmos 2044, the best fitted neural adaptation operator (k) and the gain of the pulse response were decreased during post flight when compared to preflight. Surprisingly, the best fitted gain and k values for the sum of sines were slightly elevated during post flight tests. The gain and phase of single sine responses were compared for pre- and post flight tests and compared to a larger population of afferents. In contrast to Cosmos 2044 results where on the first day of post flight testing the gains of the best fitted sine response were skewed toward the higher values of the Miles and Braitman distribution, the gain of the best fitted sine responses during the first day of post flight testing (day 2) during Cosmos 2229 were exactly on the mode of the Miles and Braitman distribution. Thus, at least for the periodic stimuli, (pulses and sine waves) we found no change in gain and neural adaptation during post flight testing following Cosmos 2229. This conclusion is different from the one derived following the Cosmos 2044 flight. Cosmos flight 2229 differed from Cosmos flight 2044 in several significant ways: For example, during preflight, (1) The animals preflight training was different (less well trained on the gaze task) and (2) the animals were exposed to more experimental manipulations (surgical and rotational). Inflight, (1) the animals were required to make a pointing gesture (motor response) in association with eye movements to obtain reward, (2) the inflight diet was different (more balanced), (3) the feeder for one of the animals clogged following 9 days of flight resulting in evident dehydration and probably less head motion exposure in that monkey and (4) there was limited video taping of the monkeys in space. During postflight, (1) we were unable to test the flight animals until 26 hours postflight as compared to 14.5 hours during Cosmos 2044, (2) the animals received significantly more exposure to motion stimuli during postflight testing than during Cosmos 2044. These differences in the vestibular environment will require analysis of several parameters other than just neural and eye movement responses. For example, computer programs will have to be written and used to recover and quantify the number of head movements made by each animal during flight. This activity is critical to the production of neural adaptation and increased gain.

Correia, Manning J.↗
NASA NTRS1999

Observations of the Rotational Transitions of OH from the Orion Molecular Cold

The goal of the observations carried out under this grant was to use several transitions of OH to infer conditions within a 1-arcminute region centered on Orion-KL. OH was selected as a diagnostic because: (1) it was predicted to be sufficiently abundant to be detectable by the KAO spectrometers; (2) there exist a number of transitions in the far- infrared free from atmospheric interference at airplane altitudes; and (3) these transitions are sensitive to a range of collisional and radiative excitation conditions believed to apply toward Orion-KL These observations were carried out as a Guest Investigator in collaboration with the Townes and Houck spectrometer groups. Though not every flight series resulted in usable data -due to technical difficulties with instrumentation - sufficient data was obtained to yield a clear picture of the source of the OH emission in Orion-KL.

Melnick, Gray J.↗
NASA NTRS2000

"Do That Again": Evaluating Spoken Dialogue Interfaces

We present a new technique for evaluating spoken dialogue interfaces that allows us to separate the dialogue behavior from the rest of the speech system. By using a dialogue simulator that we have developed, we can gather usability data on the system s dialogue interaction and behaviors that can guide improvements to the speech interface. Preliminary testing has shown promising results, suggesting that it is possible to test properties of dialogue separately from other factors such as recognition quality.

James, Frankie↗