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This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-CS5 Central Sands Irrigated Agricultural Field. This is the FLUXNET version of the carbon flux data for the site US-CS5 Central Sands Irrigated Agricultural Field produced by applying the standard ONEFlux (1F) software. Site Description - Heartland Farms Center-Pivot Irrigated Potato Field
This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-CS6 Central Sands Irrigated Agricultural Field. This is the FLUXNET version of the carbon flux data for the site US-CS6 Central Sands Irrigated Agricultural Field produced by applying the standard ONEFlux (1F) software. Site Description - Worzella Farms Center-Pivot Irrigated Potato Field
This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-CS8 Central Sands Irrigated Agricultural Field. This is the FLUXNET version of the carbon flux data for the site US-CS8 Central Sands Irrigated Agricultural Field produced by applying the standard ONEFlux (1F) software. Site Description - Worzella Farms Center-Pivot Irrigated Potato Field
This is the AmeriFlux version of the carbon flux data for the site US-NSa NASA HAQ - SJV East Irrigated Vineyard. Site Description - Irrigated vineyard site located on the east side of the San Joaquin Valley, utilizing drip irrigation. The flux tower is situated in the southeastern corner of a 200 * 300 m vineyard containing about 20 rows of grapevines. Surrounding land is primarily cultivated with other crops, mostly grapevines as well.
This is the AmeriFlux version of the carbon flux data for the site US-NSb NASA HAQ - SJV West Irrigated Cotton. Site Description - Irrigated cotton field loated on the west side of the San Joaquin Valley, utilizing furrow irrigation. The flux tower is situated in the southeastern corner of a 200 * 300 m field densely planted with Egyptian cotton. Surrounding land is primarily cultivated with other crops.
In July 2016, LLNL produced a report for the Kings River Watershed Coalition Authority (KRWCA) entitled “Groundwater Age and Nitrate Isotopic Composition in Alta Irrigation District Water Supply Wells” (Esser et al., 2016). That report summarized groundwater age and nitrate isotopic composition data produced by LLNL for Alta Irrigation District (AID) groundwater wells sampled by KRWCA in a pilot project to test the utility of advanced isotopic methods for constraining the timing and source of nitrate in groundwater at selected sites in the Kings River service area. One section of that report made recommendations for follow-on study. The first and strongest recommendation was to measure a wider suite of source tracers including co-contaminants such as herbicides, pesticides, pharmaceuticals, personal care products, and food constituents and additives. KRWCA followed up on this recommendation in Phase II of the pilot study by re-sampling the original set of wells and submitting the samples to a commercial laboratory for analysis of a limited range of co-contaminants (including pharmaceuticals, personal care products , and food constituents and additives, but not including herbicides or pesticides). They have asked that LLNL review and interpret these data in the context of previous LLNL analyses and to evaluate the utility of such co-contaminant analyses in providing additional constraints on the source of groundwater nitrate contamination in Alta Irrigation District water supply wells. The goal of the second phase of this pilot project is to evaluate the utility of co-contaminant occurrence for constraining nitrate source in groundwater at selected sites in the Kings River service area, with special reference to the use of such data in conjunction with advanced isotopic methods such as nitrate isotopic composition and groundwater age. Nitrate isotopic composition alone cannot distinguish nitrate derived from animal manure from nitrate derived from human septic waste. The presence or absence of agricultural chemicals (herbicides, pesticides, veterinary pharmaceuticals) or chemicals associated with people (human pharmaceuticals, artificial sweeteners) can help make this distinction. Co-contaminant analyses using multi-analyte LC-MS-MS protocols are now commercially available and reasonably priced. The feasibility and utility of the using co-contaminants for nitrate source attribution can be evaluated by 1) determining the degree to which co-contaminants occur in distinct and easily attributable groupings (e.g. agricultural chemicals vs personal care products and food additives); 2) determining the degree to which co-contaminant occurrence is consistent with nitrate isotopic composition and groundwater age (e.g. no co-contaminant occurrence in very old groundwater; co-contaminants consistent with animal manure or human septic waste occurring in groundwaters having nitrate isotopic composition also consistent with animal manure or human septic waste); and 3) determining the degree to which co-contaminants provide additional constraint on nitrate source over and beyond nitrate isotopic composition and groundwater age (e.g. distinguishing between animal manure and human septic waste).
Climate change is causing an increase in drought in many soil ecosystems and a loss of soil organic carbon. Calcareous soils may partially mitigate these losses via carbon capture and storage. Here, we aimed to determine how irrigation-supplied soil moisture and perennial plants impact biotic and abiotic soil properties that underpin deep soil carbon chemistry in an unfertilized calcareous soil. Soil was sampled up to one meter in depth from irrigated and planted field treatments and analyzed using a suite of omics and chemical analyses. Carbon cycling processes in the surface soil were dominated by plant-microbe interactions that drive organic carbon cycling, whereas inorganic carbon chemistry dominated in deeper soil layers. Both irrigation and plant cover impacted organic and inorganic carbon pools in the soil profiles. This study reveals the complex interactions between water, plants, minerals, and microorganisms that govern organic and inorganic pools of soil carbon at different depths.
Genomic DNA was isolated from soil and rhizosphere samples using the Zymo Quick-DNA fecal/soil microbe miniprep kit (catalog no. D6010) according to the manufacturer’s instructions (Zymo Research; Irvine, CA) with the modification of eluting in 100 uL elution buffer. Sample concentrations were quantified using the Qubit dsDNA HS assay kit (Thermo Fisher). For rhizosphere samples only, DNA was subsequently purified using Zymo’s ZR-96 DNA Clean & Concentrator kit (catalog no. D4024) to account for low DNA concentrations of these samples. . In each replicate block, there were five drip irrigation treatments (T1 = 100% normal irrigation, T2 = 56.25%, T3 = 37.5%, T4 = 18.75% and T5=no irrigation. On July 20, the strength of the drought treatments was increased: T1 remained at 100%, whereas T2 changed from 75% to 56.25%, T2 changed from 50% to 37.5%, and T4 changed from 25% to 18.75%. Sequencing was performed as described previously (Naylor, Fansler, et al. 2020). Sequences were amplified on the MiSeq platform (Illumina, San Diego, CA) using 16S primers (515F and 806R) specific to the V4 region. Raw sequence data was processed with the pipeline Hundo for amplicon quality control and annotation. Downstream statistical analyses on 16S datasets were performed using the program R and the packages ‘phyloseq’ and ‘vegan’.
RNA was collected from soil at different depths and after three different levels of irrigation T1 100% of normal field irrigation, T4: 18.75% or normal irrigation and T5: unirrigated controls. Total RNA was isolated using the Zymo Quick-RNA fecal/soil microbe miniprep (catalog no. R2040), incorporating the DNase I treatment using Zymo’s DNase I kit (catalog no. E1010). To increase the yield of RNA, we modified the manufacturer’s instructions by first doubling the amount of soil per extraction (from 0.25 g to 0.5 g) and by performing extractions in triplicate before pooling separate extractions together. Certain soil samples (largely those from deeper soil layers) had low yield (< 100 ng per extraction) so additional rounds of extraction were performed to obtain sufficient RNA. RNA concentration was assessed using a Qubit RNA HS assay kit (Thermo Fisher) and RNA quality was determined using an Agilent 2100 BioAnalyzer (Agilent; Santa Clara, CA). The resultant RNA samples were then sequenced by GENEWIZ using Illumina technology (GENEWIZ; South Plainfield, NJ). Sequences were then aligned to a soil metagenome previously obtained from the same site using the Burrows-Wheeler aligner (BWA). SAM files were then converted to raw counts using HTSeq.
Climate change is causing an increase in drought in many soil ecosystems and a loss of soil organic carbon. Calcareous soils may partially mitigate these losses via carbon capture and storage. Here, we aimed to determine how irrigation-supplied soil moisture and perennial plants impact biotic and abiotic soil properties that underpin deep soil carbon chemistry in an unfertilized calcareous soil. Soil was sampled up to one meter in depth from irrigated and planted field treatments and analyzed using a suite of omics and chemical analyses. Carbon cycling processes in the surface soil were dominated by plant-microbe interactions that drive organic carbon cycling, whereas inorganic carbon chemistry dominated in deeper soil layers. Both irrigation and plant cover impacted organic and inorganic carbon pools in the soil profiles. This study reveals the complex interactions between water, plants, minerals, and microorganisms that govern organic and inorganic pools of soil carbon at different depths.
Climate change is causing an increase in drought in many soil ecosystems and a loss of soil organic carbon. Calcareous soils may partially mitigate these losses via carbon capture and storage. Here, we aimed to determine how irrigation-supplied soil moisture and perennial plants impact biotic and abiotic soil properties that underpin deep soil carbon chemistry in an unfertilized calcareous soil. Soil was sampled up to one meter in depth from irrigated and planted field treatments and analyzed using a suite of omics and chemical analyses. Carbon cycling processes in the surface soil were dominated by plant-microbe interactions that drive organic carbon cycling, whereas inorganic carbon chemistry dominated in deeper soil layers. Both irrigation and plant cover impacted organic and inorganic carbon pools in the soil profiles. This study reveals the complex interactions between water, plants, minerals, and microorganisms that govern organic and inorganic pools of soil carbon at different depths.
Corn (Zea mays L.) residue or stover is harvested as supplemental feed for livestock and is a potential feedstock for cellulosic biofuels. Limited information is available on corn stover removal effects on grain yield under different irrigation rates, nitrogen (N) fertilizer rates, and practices to maintain soil carbon (C) and minimize soil erosion. Here, we evaluated potential interactions between irrigation rate (full or limited), C amelioration practices (cover crop, surface-applied manure, or no amelioration practice), fertilizer N management (125 or 200 kg N ha –1 ), and stover removal (residue removal or no residue removal), on no-till continuous corn grain yield located on a silt loam soil in south-central Nebraska (2011–2018). Stover removal increased (P = .0017) grain yield by 1.02 Mg ha –1 and grain N uptake compared with no stover removal. Manure increased corn grain yield by 899 kg ha –1 compared to either the control or cover crop with stover removal while C amelioration practices did not affect grain yield under stover retention. Grain N concentration was higher (P < .0001) with stover removal (13.2 g kg –1 ) than residue retained (12.7 g kg –1 ). Partial factor productivity (grain yield/N rate) was highest for manure treatments with residue removal. The farmgate N balance (N applied – N removed) from stover removal was negative, yet grain yield was not affected after eight growing seasons. Grain yield increased with stover removal and manure application resulting in a cost-effective C amelioration practice whereas incorporating a winter cover crop resulted in similar grain yield as the control.
Larval lamprey densities were quantified at two large-scale water diversions facilities located on the Yakima River near the city of Yakima, Washington. Water diversions are very common in the Yakima River Basin and provide water to irrigate a diverse range of valuable cropland. Out-migrating larval Pacific Lamprey are vulnerable to entrainment through fish protection screens during the withdrawal period and desiccation or predation during dewatering at the end of the season. In order to determine the impact to lamprey populations which inhabit these regions a portable deepwater electroshocking system was utilized to determine lamprey densities which could otherwise not be determined due to water depth. Surveys were conducted in the fall during the dewatering period in 2015 and 2017 and larval lamprey densities ranged from 0.8 to 8.8 fish m-2 at the Sunnyside Diversion Facility to 4.2 to 6.5 fish m-2 at the Wapato Diversion Facility. The estimates for the total lamprey numbers at each of the region using a portable deepwater electrofishing platform (PDEP) was very similar to those estimates using backpack electrofishing post-dewatering; the PDEP method was 12- 36% higher where comparisons were available. During 2017, the estimated lamprey entrainment at the Sunnyside Diversion increased by 484% from August to November. Lamprey lengths were also determined and ranged from 50 to 130 mm. Our results indicate that the use of the deepwater shocking system was very safe and effective at determining larval lamprey densities at hard to sample regions which are present near irrigation facilities.
Pine needles and tree cores from a tritium (T) contaminated phytoremediation forest at the Savannah River Site (SRS in Aiken, SC) Mixed Waste Management Facility (MWMF) were measured for total T and T speciation and compared to other locations at the SRS and the surrounding area. Tree core ages ranged from 9 to 14 years old, covering over half of the ~20-year on-going remediation efforts, while pine needles represent more recent time periods of 1-to-2-year increments. Remedial irrigation efforts at the MWMF are found to directly influence the pine needle T concentrations. The T content in the MWMF samples is higher than non-irrigated needle samples from other locations around the SRS. Furthermore, the different forms of organic bound T are preferentially stored in tree core tissue, compared to pine needles where tritiated water dominates.
This is the AmeriFlux version of the carbon flux data for the site US-CS1 Central Sands Irrigated Agricultural Field. Site Description - Heartland Farms Center-Pivot Irrigated Potato Field
This is the AmeriFlux version of the carbon flux data for the site US-MC1 Creston, Montana pivot-irrigated spring wheat. Site Description - pivot-irrigated spring wheat
This is the AmeriFlux version of the carbon flux data for the site US-MH1 Huntley, Montana irrigated barley site 1. Site Description - flood-irrigated barley field
This is the AmeriFlux version of the carbon flux data for the site US-CS4 Central Sands Irrigated Agricultural Field. Site Description - Heartland Farms Center-Pivot Irrigated Potato Field