SLM280 Mock Builds and Experiments Using Service Scripting Menu in MCS
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The DESI-Lensing Mock Challenge: large-scale cosmological analysis of 3x2-pt statistics
The current generation of large galaxy surveys will test the cosmological model by combining multiple types of observational probes. Realising the statistical promise of these new datasets requires rigorous attention to all aspects of analysis including cosmological measurements, modelling, covariance and parameter likelihood. In this paper we present the results of an end-to-end simulation study designed to test the analysis pipeline for the combination of the Dark Energy Spectroscopic Instrument (DESI) Year 1 galaxy redshift dataset and separate weak gravitational lensing information from the Kilo-Degree Survey, Dark Energy Survey and Hyper-Suprime-Cam Survey. Our analysis employs the 3x2-pt correlation functions including cosmic shear and galaxy-galaxy lensing, together with the projected correlation function of the spectroscopic DESI lenses. We build realistic simulations of these datasets including galaxy halo occupation distributions, photometric redshift errors, weights, multiplicative shear calibration biases and magnification. We calculate the analytical covariance of these correlation functions including the Gaussian, noise and super-sample contributions, and show that our covariance determination agrees with estimates based on the ensemble of simulations. We use a Bayesian inference platform to demonstrate that we can recover the fiducial cosmological parameters of the simulation within the statistical error margin of the experiment, investigating the sensitivity to scale cuts. This study is the first in a sequence of papers in which we present and validate the large-scale 3x2-pt cosmological analysis of DESI-Y1.
79 ASTRONOMY AND ASTROPHYSICS↗
The DESI PRObabilistic Value-added Bright Galaxy Survey (PROVABGS) Mock Challenge
The PRObabilistic Value-added Bright Galaxy Survey (PROVABGS) catalog will provide measurements of galaxy properties, such as stellar mass ($M*$), star formation rate (SFR), stellar metallicity (Z), and stellar age ($t_{age}$), for >10 million galaxies of the Dark Energy Spectroscopic Instrument (DESI) Bright Galaxy Survey. Full posterior distributions of the galaxy properties will be inferred using state-of-the-art Bayesian spectral energy distribution (SED) modeling of DESI spectroscopy and Legacy Surveys photometry. In this work, we present the SED model, the neural emulator for the model, and the Bayesian inference framework of PROVABGS. Furthermore, we apply the PROVABGS SED modeling on realistic synthetic DESI spectra and photometry, constructed using the L-Galaxies semi-analytic model. We compare the inferred galaxy properties to the true values of the simulation using a hierarchical Bayesian framework to quantify accuracy and precision. Overall, we accurately infer the true $M*$, SFR, Z, and $t_{age}$ of the simulated galaxies. However, the priors on galaxy properties induced by the SED model have a significant impact on the posteriors, which we characterize in detail. This work also demonstrates that a joint analysis of spectra and photometry significantly improves the constraints on galaxy properties over photometry alone and is necessary to mitigate the impact of the priors. With the methodology presented and validated in this work, PROVABGS will maximize information extracted from DESI observations and extend current galaxy studies to new regimes and unlock cutting-edge probabilistic analyses. https://github.com/changhoonhahn/provabgs/
79 ASTRONOMY AND ASTROPHYSICS↗
Enhancing Sterile Neutrino Oscillation Sensitivities using SBND-PRISM at the Short-Baseline Neutrino Programme
The Short-Baseline Neutrino (SBN) Programme at Fermilab is comprised of two detectors, SBND and ICARUS, placed at $110$\,m and $600$\,m along the Booster Neutrino Beam at Fermilab. The key physics aim of the programme is to definitively test the sterile neutrino hypothesis, a proposed fourth flavour of neutrino that may explain certain experimental anomalies seen regarding standard model neutrino oscillations. To be able to detect the existence of sterile neutrinos, the uncertainties of the programme must be well constrained. To enable this, a robust analysis must be constructed that can consistently identify the correct values of systematic parameters and generate accurate predictions of what the neutrino energy spectrum at ICARUS should look like. SBND's design allows for the introduction of a technique called PRISM. In PRISM, the detector is divided into regions of different off axis angles from the beam, forming different samples where systematics impact each one in a distinct way. This allows any fits performed to obtain a better understanding of the correct value of the systematic parameters. The first analysis included in this thesis focuses on the improvements seen to the sensitivity of SBN to sterile oscillation parameters when using a PRISM configuration instead of treating SBND as a single whole. Focusing on the $5\sigma$ exclusion contour from the $\numu$ disappearance channel using three PRISM samples, an improvement on the order of $30$\,\% is seen, extending the parameter space for which the null hypothesis can be excluded. This thesis also presents a series of mock data studies comparing the abilities of SBND and PRISM analyses, concluding that in the case of simple changes between Monte Carlo (MC) and data, PRISM produces predictions of the ICARUS event rate spectrum that are more accurate and have smaller uncertainties. When moving to more realistic mock data, using different models to create the mock data than were used for the MC, the postfit predictions at ICARUS had a smaller difference between the postfit and mock data reconstructed energy spectra across all mock data samples tested. Finally, a covariance matrix defined by the maximum discrepancy between the postfit and mock data spectra at ICARUS from each of the SBND and PRISM fits across all the samples was constructed. The resultant $1\sigma$ fractional error induced by this bias systematic on the postfit spectrum has a smaller magnitude for PRISM than SBND, with the improvements ranging from $2.21$\,\% to $6.26$\,\% depending on the mock data samples. This summarises the reduction in systematic error when using PRISM instead of treating SBND as a single detector. *************************************** AUTHOR = Slater, Bethany University of Liverpool b.slater2@liverpool.ac.uk TITLE = Enhancing Sterile Neutrino Oscillation Sensitivities using SBND-PRISM at the Short-Baseline Neutrino Programme PAGES = 218 NOTE = Ph.D. University of Liverpool March 2026 ABSTRACT = The Short-Baseline Neutrino (SBN) Programme at Fermilab is comprised of two detectors, SBND and ICARUS, placed at $110$\,m and $600$\,m along the Booster Neutrino Beam at Fermilab. The key physics aim of the programme is to definitively test the sterile neutrino hypothesis, a proposed fourth flavour of neutrino that may explain certain experimental anomalies seen regarding standard model neutrino oscillations. To be able to detect the existence of sterile neutrinos, the uncertainties of the programme must be well constrained. To enable this, a robust analysis must be constructed that can consistently identify the correct values of systematic parameters and generate accurate predictions of what the neutrino energy spectrum at ICARUS should look like. SBND's design allows for the introduction of a technique called PRISM. In PRISM, the detector is divided into regions of different off axis angles from the beam, forming different samples where systematics impact each one in a distinct way. This allows any fits performed to obtain a better understanding of the correct value of the systematic parameters. The first analysis included in this thesis focuses on the improvements seen to the sensitivity of SBN to sterile oscillation parameters when using a PRISM configuration instead of treating SBND as a single whole. Focusing on the $5\sigma$ exclusion contour from the $\numu$ disappearance channel using three PRISM samples, an improvement on the order of $30$\,\% is seen, extending the parameter space for which the null hypothesis can be excluded. This thesis also presents a series of mock data studies comparing the abilities of SBND and PRISM analyses, concluding that in the case of simple changes between Monte Carlo (MC) and data, PRISM produces predictions of the ICARUS event rate spectrum that are more accurate and have smaller uncertainties. When moving to more realistic mock data, using different models to create the mock data than were used for the MC, the postfit predictions at ICARUS had a smaller difference between the postfit and mock data reconstructed energy spectra across all mock data samples tested. Finally, a covariance matrix defined by the maximum discrepancy between the postfit and mock data spectra at ICARUS from each of the SBND and PRISM fits across all the samples was constructed. The resultant $1\sigma$ fractional error induced by this bias systematic on the postfit spectrum has a smaller magnitude for PRISM than SBND, with the improvements ranging from $2.21$\,\% to $6.26$\,\% depending on the mock data samples. This summarises the reduction in systematic error when using PRISM instead of treating SBND as a single detector.
Slater, Bethany [Liverpool U.]↗
Enhancing Sterile Neutrino Oscillation Sensitivities using SBND-PRISM at the Short-Baseline Neutrino Programme
The Short-Baseline Neutrino (SBN) Programme at Fermilab is comprised of two detectors, SBND and ICARUS, placed at $110$\,m and $600$\,m along the Booster Neutrino Beam at Fermilab. The key physics aim of the programme is to definitively test the sterile neutrino hypothesis, a proposed fourth flavour of neutrino that may explain certain experimental anomalies seen regarding standard model neutrino oscillations. To be able to detect the existence of sterile neutrinos, the uncertainties of the programme must be well constrained. To enable this, a robust analysis must be constructed that can consistently identify the correct values of systematic parameters and generate accurate predictions of what the neutrino energy spectrum at ICARUS should look like. SBND's design allows for the introduction of a technique called PRISM. In PRISM, the detector is divided into regions of different off axis angles from the beam, forming different samples where systematics impact each one in a distinct way. This allows any fits performed to obtain a better understanding of the correct value of the systematic parameters. The first analysis included in this thesis focuses on the improvements seen to the sensitivity of SBN to sterile oscillation parameters when using a PRISM configuration instead of treating SBND as a single whole. Focusing on the $5\sigma$ exclusion contour from the $\numu$ disappearance channel using three PRISM samples, an improvement on the order of $30$\,\% is seen, extending the parameter space for which the null hypothesis can be excluded. This thesis also presents a series of mock data studies comparing the abilities of SBND and PRISM analyses, concluding that in the case of simple changes between Monte Carlo (MC) and data, PRISM produces predictions of the ICARUS event rate spectrum that are more accurate and have smaller uncertainties. When moving to more realistic mock data, using different models to create the mock data than were used for the MC, the postfit predictions at ICARUS had a smaller difference between the postfit and mock data reconstructed energy spectra across all mock data samples tested. Finally, a covariance matrix defined by the maximum discrepancy between the postfit and mock data spectra at ICARUS from each of the SBND and PRISM fits across all the samples was constructed. The resultant $1\sigma$ fractional error induced by this bias systematic on the postfit spectrum has a smaller magnitude for PRISM than SBND, with the improvements ranging from $2.21$\,\% to $6.26$\,\% depending on the mock data samples. This summarises the reduction in systematic error when using PRISM instead of treating SBND as a single detector. *************************************** AUTHOR = Slater, Bethany University of Liverpool b.slater2@liverpool.ac.uk TITLE = Enhancing Sterile Neutrino Oscillation Sensitivities using SBND-PRISM at the Short-Baseline Neutrino Programme PAGES = 218 NOTE = Ph.D. University of Liverpool March 2026 ABSTRACT = The Short-Baseline Neutrino (SBN) Programme at Fermilab is comprised of two detectors, SBND and ICARUS, placed at $110$\,m and $600$\,m along the Booster Neutrino Beam at Fermilab. The key physics aim of the programme is to definitively test the sterile neutrino hypothesis, a proposed fourth flavour of neutrino that may explain certain experimental anomalies seen regarding standard model neutrino oscillations. To be able to detect the existence of sterile neutrinos, the uncertainties of the programme must be well constrained. To enable this, a robust analysis must be constructed that can consistently identify the correct values of systematic parameters and generate accurate predictions of what the neutrino energy spectrum at ICARUS should look like. SBND's design allows for the introduction of a technique called PRISM. In PRISM, the detector is divided into regions of different off axis angles from the beam, forming different samples where systematics impact each one in a distinct way. This allows any fits performed to obtain a better understanding of the correct value of the systematic parameters. The first analysis included in this thesis focuses on the improvements seen to the sensitivity of SBN to sterile oscillation parameters when using a PRISM configuration instead of treating SBND as a single whole. Focusing on the $5\sigma$ exclusion contour from the $\numu$ disappearance channel using three PRISM samples, an improvement on the order of $30$\,\% is seen, extending the parameter space for which the null hypothesis can be excluded. This thesis also presents a series of mock data studies comparing the abilities of SBND and PRISM analyses, concluding that in the case of simple changes between Monte Carlo (MC) and data, PRISM produces predictions of the ICARUS event rate spectrum that are more accurate and have smaller uncertainties. When moving to more realistic mock data, using different models to create the mock data than were used for the MC, the postfit predictions at ICARUS had a smaller difference between the postfit and mock data reconstructed energy spectra across all mock data samples tested. Finally, a covariance matrix defined by the maximum discrepancy between the postfit and mock data spectra at ICARUS from each of the SBND and PRISM fits across all the samples was constructed. The resultant $1\sigma$ fractional error induced by this bias systematic on the postfit spectrum has a smaller magnitude for PRISM than SBND, with the improvements ranging from $2.21$\,\% to $6.26$\,\% depending on the mock data samples. This summarises the reduction in systematic error when using PRISM instead of treating SBND as a single detector.
Slater, Bethany [Liverpool U.]↗
Enhancing Sterile Neutrino Oscillation Sensitivities using SBND-PRISM at the Short-Baseline Neutrino Programme
The Short-Baseline Neutrino (SBN) Programme at Fermilab is comprised of two detectors, SBND and ICARUS, placed at $110$\,m and $600$\,m along the Booster Neutrino Beam at Fermilab. The key physics aim of the programme is to definitively test the sterile neutrino hypothesis, a proposed fourth flavour of neutrino that may explain certain experimental anomalies seen regarding standard model neutrino oscillations. To be able to detect the existence of sterile neutrinos, the uncertainties of the programme must be well constrained. To enable this, a robust analysis must be constructed that can consistently identify the correct values of systematic parameters and generate accurate predictions of what the neutrino energy spectrum at ICARUS should look like. SBND's design allows for the introduction of a technique called PRISM. In PRISM, the detector is divided into regions of different off axis angles from the beam, forming different samples where systematics impact each one in a distinct way. This allows any fits performed to obtain a better understanding of the correct value of the systematic parameters. The first analysis included in this thesis focuses on the improvements seen to the sensitivity of SBN to sterile oscillation parameters when using a PRISM configuration instead of treating SBND as a single whole. Focusing on the $5\sigma$ exclusion contour from the $\numu$ disappearance channel using three PRISM samples, an improvement on the order of $30$\,\% is seen, extending the parameter space for which the null hypothesis can be excluded. This thesis also presents a series of mock data studies comparing the abilities of SBND and PRISM analyses, concluding that in the case of simple changes between Monte Carlo (MC) and data, PRISM produces predictions of the ICARUS event rate spectrum that are more accurate and have smaller uncertainties. When moving to more realistic mock data, using different models to create the mock data than were used for the MC, the postfit predictions at ICARUS had a smaller difference between the postfit and mock data reconstructed energy spectra across all mock data samples tested. Finally, a covariance matrix defined by the maximum discrepancy between the postfit and mock data spectra at ICARUS from each of the SBND and PRISM fits across all the samples was constructed. The resultant $1\sigma$ fractional error induced by this bias systematic on the postfit spectrum has a smaller magnitude for PRISM than SBND, with the improvements ranging from $2.21$\,\% to $6.26$\,\% depending on the mock data samples. This summarises the reduction in systematic error when using PRISM instead of treating SBND as a single detector. *************************************** AUTHOR = Slater, Bethany University of Liverpool b.slater2@liverpool.ac.uk TITLE = Enhancing Sterile Neutrino Oscillation Sensitivities using SBND-PRISM at the Short-Baseline Neutrino Programme PAGES = 218 NOTE = Ph.D. University of Liverpool March 2026 ABSTRACT = The Short-Baseline Neutrino (SBN) Programme at Fermilab is comprised of two detectors, SBND and ICARUS, placed at $110$\,m and $600$\,m along the Booster Neutrino Beam at Fermilab. The key physics aim of the programme is to definitively test the sterile neutrino hypothesis, a proposed fourth flavour of neutrino that may explain certain experimental anomalies seen regarding standard model neutrino oscillations. To be able to detect the existence of sterile neutrinos, the uncertainties of the programme must be well constrained. To enable this, a robust analysis must be constructed that can consistently identify the correct values of systematic parameters and generate accurate predictions of what the neutrino energy spectrum at ICARUS should look like. SBND's design allows for the introduction of a technique called PRISM. In PRISM, the detector is divided into regions of different off axis angles from the beam, forming different samples where systematics impact each one in a distinct way. This allows any fits performed to obtain a better understanding of the correct value of the systematic parameters. The first analysis included in this thesis focuses on the improvements seen to the sensitivity of SBN to sterile oscillation parameters when using a PRISM configuration instead of treating SBND as a single whole. Focusing on the $5\sigma$ exclusion contour from the $\numu$ disappearance channel using three PRISM samples, an improvement on the order of $30$\,\% is seen, extending the parameter space for which the null hypothesis can be excluded. This thesis also presents a series of mock data studies comparing the abilities of SBND and PRISM analyses, concluding that in the case of simple changes between Monte Carlo (MC) and data, PRISM produces predictions of the ICARUS event rate spectrum that are more accurate and have smaller uncertainties. When moving to more realistic mock data, using different models to create the mock data than were used for the MC, the postfit predictions at ICARUS had a smaller difference between the postfit and mock data reconstructed energy spectra across all mock data samples tested. Finally, a covariance matrix defined by the maximum discrepancy between the postfit and mock data spectra at ICARUS from each of the SBND and PRISM fits across all the samples was constructed. The resultant $1\sigma$ fractional error induced by this bias systematic on the postfit spectrum has a smaller magnitude for PRISM than SBND, with the improvements ranging from $2.21$\,\% to $6.26$\,\% depending on the mock data samples. This summarises the reduction in systematic error when using PRISM instead of treating SBND as a single detector.
Slater, Bethany [Liverpool U.]↗
Effects of error, chimera, bias, and GC content on the accuracy of amplicon sequencing
ABSTRACT Targeted amplicon sequencing is widely used in microbial ecology studies. However, sequencing artifacts and amplification biases are of great concern. To identify sources of these artifacts, a systematic analysis was performed using mock communities comprised of 16S rRNA genes from 33 bacterial strains. Our results indicated that while sequencing errors were generally isolated to low-abundance operational taxonomic units, chimeric sequences were a major source of artifacts. Singleton and doubleton sequences were primarily chimeras. Formation of chimeric sequences was significantly correlated with the GC content of the targeted sequences. Low-GC-content mock community members exhibited lower rates of chimeric sequence formation. GC content also had a large impact on sequence recovery. The quantitative capacity was notably limited, with substantial recovery variations and weak correlation between anticipated and observed strain abundances. The mock community strains with higher GC content had higher recovery rates than strains with lower GC content. Amplification bias was also observed due to the differences in primer affinity. A two-step PCR strategy reduced the number of chimeric sequences by half. In addition, comparative analyses based on the mock communities showed that several widely used sequence processing pipelines/methods, including DADA2, Deblur, UCLUST, UNOISE, and UPARSE, had different advantages and disadvantages in artifact removal and rare species detection. These results are important for improving sequencing quality and reliability and developing new algorithms to process targeted amplicon sequences. IMPORTANCE Amplicon sequencing of targeted genes is the predominant approach to estimate the membership and structure of microbial communities. However, accurate reconstruction of community composition is difficult due to sequencing errors, and other methodological biases and effective approaches to overcome these challenges are essential. Using a mock community of 33 phylogenetically diverse strains, this study evaluated the effect of GC content on sequencing results and tested different approaches to improve overall sequencing accuracy while characterizing the pros and cons of popular amplicon sequence data processing approaches. The sequencing results from this study can serve as a benchmarking data set for future algorithmic improvements. Furthermore, the new insights on sequencing error, chimera formation, and GC bias from this study will help enhance the quality of amplicon sequencing studies and support the development of new data analysis approaches.
59 BASIC BIOLOGICAL SCIENCES↗
Validation of the DESI DR2 Ly$α$ forest full-shape analysis
We present the validation of the Dark Energy Spectroscopic Instrument (DESI) Data Release 2 (DR2) Lyman-$α$ (Ly$α$) forest full-shape analysis. This analysis combines three-dimensional Ly$α$ forest auto-correlations and cross-correlations with quasars to extract information from both the baryon acoustic oscillation (BAO) feature and the broadband clustering signal, with primary emphasis on the Alcock-Paczynski (AP) measurement. Compared to the DESI DR1 analysis, the DR2 validation uses substantially larger and more realistic mock datasets, including CoLoRe 2LPT and AbacusSummit Ly$α$ forest simulations. The modeling framework is also improved through analytic marginalization over small scales ($<10$$h^{-1}$Mpc) and the impact of ultraviolet background fluctuations. The validation program was completed prior to unblinding and defines quantitative requirements for the cosmological parameters of interest, which are evaluated using hundreds of mock realizations. We further test the analysis through independent fits to the auto- and cross-correlations, multiple catalog splits, and a broad suite of analysis and modeling variations applied to both mocks and blinded observational data. We find that the BAO and AP parameters satisfy all validation requirements and remain stable across all tests. In contrast, mock studies reveal a significant bias in the inferred growth-rate parameter $fσ_8$, leading us to exclude this measurement from the final analysis. The consistency across mocks, data splits, and robustness tests demonstrates that the DR2 Ly$α$ full-shape analysis provides a reliable and substantially improved broadband AP measurement over previous Ly$α$ forest studies.
Herbold, M. [Chicago U., KICP; Ohio State U.] (ORC↗
High Heat Flux Testing of Castellated Graphite Plasma- Facing Components
As part of the recovery project of the National Spherical Tokamak Experiment–Upgrade (NSTX-U), the divertor plasma-facing components (PFCs) were redesigned to handle significantly higher heat fluxes and longer pulse lengths than NSTX. The design process resulted in a castellated, graphite PFC tile. To verify the thermal performance of this design, dedicated electron beam, high heat flux (HHF) testing was carried out on a de-optimized mock-up PFC target. These tests demonstrated that the tile design is itself robust to large, localized thermal gradients. No mechanical damage to the mock-up was observed during HHF testing, though the actual PFC tile mechanical tie-down was not tested. Rather, when the surface temperature exceeded the sublimation temperature of graphite, carbon blooms from the mock-up tile surface were observed. Finally, this resulted in 1 to 2 mm of surface material ablating from the mock-up after repeated, highly localized electron beam exposures.
70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
Semi-analytical covariance matrices for two-point correlation function for DESI 2024 data
We present an optimized way of producing the fast semi-analytical covariance matrices for the Legendre moments of the two-point correlation function, taking into account survey geometry and mimicking the non-Gaussian effects. We validate the approach on simulated (mock) catalogs for different galaxy types, representative of the Dark Energy Spectroscopic Instrument (DESI) Data Release 1, used in 2024 analyses. We find only a few percent differences between the mock sample covariance matrix and our results, which can be expected given the approximate nature of the mocks, although we do identify discrepancies between the shot-noise properties of the DESI fiber assignment algorithm and the faster approximation (emulator) used in the mocks. Importantly, we find a close agreement (≤ 8% relative differences) in the projected errorbars for distance scale parameters for the baryon acoustic oscillation measurements. This confirms our method as an attractive alternative to simulation-based covariance matrices, especially for non-standard models or galaxy sample selections, making it particularly relevant to the broad current and future analyses of DESI data.
79 ASTRONOMY AND ASTROPHYSICS↗
Stacked CMB lensing and ISW signals around superstructures in the DESI Legacy Survey
The imprints of large-scale structures on the Cosmic Microwave Background (CMB) can be studied via the CMB lensing and Integrated Sachs–Wolfe (ISW) signals. In particular, the stacked ISW signal around supervoids has been claimed in several works to be anomalously high. In this study, we find cluster and void superstructures using four tomographic redshift bins with 0 < z < 0.8 from the DESI Legacy Survey and measure the stacked CMB lensing and ISW signals around them. To compare our measurements with ΛCDM model predictions, we construct a mock catalogue with matched galaxy number density and bias and apply the same photo-z uncertainty as the data. The consistency between the mock and the data is verified via the stacked galaxy density profiles around the superstructures and their quantity. The corresponding lensing convergence and ISW maps are then constructed and compared. The stacked lensing signal agrees with data well except at the highest redshift bin in density peaks, where the mock prediction is significantly higher, by approximately a factor of 1.3. The stacked ISW signal is generally consistent with the mock prediction. We do not obtain a significant signal from voids, A ISW = -0.10 ± 0.69, and the signal from clusters, A ISW = 1.52 ± 0.72, is at best weakly detected. However, these results are strongly inconsistent with previous claims of ISW signals at many times the level of the ΛCDM prediction. We discuss the comparison of our results with past work in this area and investigate possible explanations for this discrepancy.
79 ASTRONOMY AND ASTROPHYSICS↗
Validation of semi-analytical, semi-empirical covariance matrices for two-point correlation function for early DESI data
ABSTRACT We present an extended validation of semi-analytical, semi-empirical covariance matrices for the two-point correlation function (2PCF) on simulated catalogs representative of luminous red galaxies (LRGs) data collected during the initial 2 months of operations of the Stage-IV ground-based Dark Energy Spectroscopic Instrument (DESI). We run the pipeline on multiple effective Zel’dovich (EZ) mock galaxy catalogs with the corresponding cuts applied and compare the results with the mock sample covariance to assess the accuracy and its fluctuations. We propose an extension of the previously developed formalism for catalogs processed with standard reconstruction algorithms. We consider methods for comparing covariance matrices in detail, highlighting their interpretation and statistical properties caused by sample variance, in particular, non-trivial expectation values of certain metrics even when the external covariance estimate is perfect. With improved mocks and validation techniques, we confirm a good agreement between our predictions and sample covariance. This allows one to generate covariance matrices for comparable data sets without the need to create numerous mock galaxy catalogs with matching clustering, only requiring 2PCF measurements from the data itself. The code used in this paper is publicly available at https://github.com/oliverphilcox/RascalC.
79 ASTRONOMY AND ASTROPHYSICS↗
A comparison of the baryonic Tully–Fisher relation in MaNGA and IllustrisTNG
We compare an observed baryonic Tully–Fisher relation (BTFR) from the Mapping Nearby Galaxies at Apache Point Observatory (MaNGA) and HI-MaNGA surveys to a simulated BTFR from the cosmological magnetohydrodynamical simulation, IllustrisTNG. To do so, we calibrate the BTFR of the local universe using 377 galaxies from the MaNGA and HI-MaNGA surveys, and perform mock 21 cm observations of matching galaxies from IllustrisTNG. The mock observations are used to ensure that the comparison with the observed galaxies is fair since it has identical measurement algorithms, observational limitations, biases, and uncertainties. For comparison, we also calculate the BTFR for the simulation without mock observations and demonstrate how mock observations are necessary to fairly and consistently compare between observational and theoretical data. We report a MaNGA BTFR of log$_{10} (M_{ \rm Bary}/M_\odot)= (2.97 \pm 0.18)$ log$_{10} V_{ \rm Rot} + (4.04 \pm 0.41)\, \log _{10}{M_{\odot }}$ and an IllustrisTNG BTFR of log$_{10} (M_{ \rm Bary}/M_\odot) = (2.94 \pm 0.23$) log$_{10} V_{ \rm Rot} + (4.15 \pm 0.44)\, \log _{10}{M_{\odot }}$. Thus, MaNGA and IllustrisTNG produce BTFRs that agree within uncertainties, demonstrating that IllustrisTNG has created a galaxy population that obeys the observed relationship between mass and rotation velocity in the observed universe.
79 ASTRONOMY AND ASTROPHYSICS↗
Forecasting constraints on the mean free path of ionizing photons at z ≥ 5.4 from the Lyman-α forest flux autocorrelation function
ABSTRACT Fluctuations in Lyman-α (Ly α) forest transmission towards high-z quasars are partially sourced from spatial fluctuations in the ultraviolet background, the level of which are set by the mean free path of ionizing photons (λmfp). The autocorrelation function of Ly α forest flux characterizes the strength and scale of transmission fluctuations and, as we show, is thus sensitive to λmfp. Recent measurements at z ∼ 6 suggest a rapid evolution of λmfp at z > 5.0 which would leave a signature in the evolution of the autocorrelation function. For this forecast, we model mock Ly α forest data with properties similar to the XQR-30 extended data set at 5.4 ≤ z ≤ 6.0. At each z, we investigate 100 mock data sets and an ideal case where mock data matches model values of the autocorrelation function. For ideal data with λmfp = 9.0 cMpc at z = 6.0, we recover $\lambda _{\text{mfp}}=12^{+6}_{-3}$ cMpc. This precision is comparable to direct measurements of λmfp from the stacking of quasar spectra beyond the Lyman limit. Hypothetical high-resolution data leads to a $\sim 40~{{\ \rm per\ cent}}$ reduction in the error bars over all z. The distribution of mock values of the autocorrelation function in this work is highly non-Gaussian for high-z, which should caution work with other statistics of the high-z Ly α forest against making this assumption. We use a rigorous statistical method to pass an inference test, however future work on non-Gaussian methods will enable higher precision measurements.
Astronomy & Astrophysics↗
Dark Energy Survey Year 3 results: Simulation-based cosmological inference with wavelet harmonics, scattering transforms, and moments of weak lensing mass maps. Validation on simulations
Beyond-two-point statistics contain additional information on cosmological as well as astrophysical and observational (systematics) parameters. In this methodology paper we provide an end-to-end simulationbased analysis of a set of Gaussian and non-Gaussian weak lensing statistics using detailed mock catalogs of the Dark Energy Survey (DES). Here, we implement: 1) second and third moments; 2) wavelet phase harmonics (WPH); 3) the scattering transform (ST). Our analysis is fully based on simulations, it spans a space of seven $νw$CDM cosmological parameters, and it forward models the most relevant sources of systematics of the data (masks, noise variations, clustering of the sources, intrinsic alignments, and shear and redshift calibration). We implement a neural network compression of the summary statistics, and we estimate the parameter posteriors using a likelihood-free-inference approach. We validate the pipeline extensively, and we find that WPH exhibits the strongest performance when combined with second moments, followed by ST, and then by third moments. The combination of all the different statistics further enhances constraints with respect to second moments, up to 25 percent, 15 percent, and 90 percent for S 8 , Ω m , and the figure-of-merit FoM S8;Ωm , respectively. We further find that non-Gaussian statistics improve constraints on w and on the amplitude of intrinsic alignment with respect to second moments constraints. The methodological advances presented here are suitable for application to Stage IV surveys from Euclid, Rubin-LSST, and Roman with additional validation on mock catalogs for each survey. In a companion paper we present an application to DES Year 3 data.
79 ASTRONOMY AND ASTROPHYSICS↗
Compressive strength of the plastic-bonded explosive surrogate idoxuridine under quasistatic and dynamic compression
Inert simulant materials, or “mocks”, are often used as surrogates for plastic-bonded explosives (PBX) in non-detonative tests in order to mitigate hazards. Mocks should reproduce as many non-detonative properties of the explosive as possible, including structural behavior in a variety of thermal and mechanical environments. Recently, the molecular crystal idoxuridine (IDOX) has been identified as an ideal mock for the main component in the explosive polymer-matrix composite PBX 9501, and has performed favorably under quasistatic loading conditions. Here, in order to assess robustness over a range of mechanical environments, plastic-bonded IDOX was compression tested from 0.001/s to 2000/s strain rates and compared to PBX 9501 historical data. Plastic-bonded IDOX showed good agreement to PBX 9501 across these strain rates, justifying continued development and production as a mock.
Burch, Alexandra C.↗
Evaluating two live-attenuated vaccines against Salmonella enterica serovar Reading in turkeys: reduced tissue colonization and cecal tonsil transcriptome responses
Vaccines that cross-protect across serovars ofSalmonella enterica(Salmonella) would be a beneficial intervention against emerging and persistentSalmonellaisolates of concern for the turkey industry. The 2017–2019 foodborne outbreak ofSalmonella entericaserovar Reading (S. Reading) revealed the need for effective control of this serovar in turkey production. This study evaluated two live-attenuatedSalmonellavaccines, an internally developed cross-protective vaccine and a commercially available vaccine, against an outbreak-associated strain ofS. Reading in turkeys. At 1 day and 3 weeks of age, male turkey poults were either mock-vaccinated with phosphate buffered saline (PBS) or given one of the vaccines by oral gavage (primary and booster) or aerosol spray (primary) then drinking water (booster). At 7 weeks of age, poults were challenged with 10 9 colony forming units (CFU) ofS. Reading; a mock-vaccinated group was mock-challenged with PBS. Colonization of the cecal contents and cecal tonsil was 1.5–3 log 10 CFU/g lower in vaccinated birds than mock-vaccinated birds at 7 and/or 14 days post-inoculation (DPI).Salmonelladissemination to the spleen was significantly reduced by both vaccines. Gene expression of intestinal transporters (such asSCNN1BandSLC10A2) and tight junction proteins was significantly decreased in the turkey cecal tonsil transcriptome at 2 DPI withS. Reading. Vaccination with either vaccine mitigated most cecal tonsil gene expression responses toS. Reading challenge. Therefore, both the internally developed vaccine and commercial vaccine were cross-protective against colonization and dissemination, and both were able to limit transcriptional changes from challenge in intestinal health-related genes in the cecal tonsil, thereby providing vaccination efficacy and impact data againstS. Reading in turkeys.
Veterinary Sciences↗
Main-sequence Scatter is Real: The Joint Dependence of Galaxy Clustering on Star Formation and Stellar Mass
We present new measurements of the clustering of stellar-mass-complete samples of ∼40,000 SDSS galaxies at z ∼ 0.03 as a joint function of stellar mass and specific star formation rate (sSFR). Our results confirm what Coil et al. find at z ∼ 0.7: galaxy clustering is a stronger function of sSFR at fixed stellar mass than of stellar mass at fixed sSFR. We also find that galaxies above the star-forming main sequence (SFMS) with higher sSFR are less clustered than galaxies below the SFMS with lower sSFR, at a given stellar mass. A similar trend is present for quiescent galaxies. This confirms that main-sequence scatter, and scatter within the quiescent sequence, is physically connected to the large-scale cosmic density field. We compare the resulting galaxy bias versus sSFR, and relative bias versus sSFR ratio, for different galaxy samples across 0 < z < 1.2 to mock galaxy catalogs based on the empirical galaxy evolution model of Behroozi et al. This model fits PRIMUS and DEEP2 clustering data well at intermediate redshift, but agreement with SDSS is not as strong. We show that increasing the correlation between galaxy SFR and halo accretion rate at z ∼ 0 in the model substantially improves agreement with SDSS data. Mock catalogs suggest that central galaxies contribute substantially to the dependence of clustering on sSFR at a given stellar mass and that the signal is not simply an effect of satellite galaxy fraction differences with sSFR. Our results are highly constraining for galaxy evolution models and show that the stellar-to-halo mass relation depends on sSFR.
71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗