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At least 73 records · Page 4

Increased seminal root number associated with domestication improves nitrogen and phosphorus acquisition in maize seedlings

Abstract Background and Aims Domesticated maize (Zea mays ssp. mays) generally forms between two and six seminal roots, while its wild ancestor, Mexican annual teosinte (Zea mays ssp. parviglumis), typically lacks seminal roots. Maize also produces larger seeds than teosinte, and it generally has higher growth rates as a seedling. Maize was originally domesticated in the tropical soils of southern Mexico, but it was later brought to the Mexican highlands before spreading to other parts of the continent, where it experienced different soil resource constraints. The aims of this study were to understand the impacts of increased seminal root number on seedling nitrogen and phosphorus acquisition and to model how differences in maize and teosinte phenotypes might have contributed to increased seminal root number in domesticated maize. Methods Seedling root system architectural models of a teosinte accession and a maize landrace were constructed by parameterizing the functional–structural plant model OpenSimRoot using plants grown in mesocosms. Seedling growth was simulated in a low-phosphorus environment, multiple low-nitrogen environments, and at variable planting densities. Models were also constructed to combine individual components of the maize and teosinte phenotypes. Key Results Seminal roots contributed ~35 % of the nitrogen and phosphorus acquired by maize landrace seedlings in the first 25 d after planting. Increased seminal root number improved plant nitrogen acquisition under low-nitrogen environments with varying precipitation patterns, fertilization rates, soil textures and planting densities. Models suggested that the optimal number of seminal roots for nutrient acquisition in teosinte is constrained by its limited seed carbohydrate reserves. Conclusions Seminal roots can improve the acquisition of both nitrogen and phosphorus in maize seedlings, and the increase in seed size associated with maize domestication may have facilitated increased seminal root number.

59 BASIC BIOLOGICAL SCIENCES↗

Experimental Measurements of the Wake of a Sphere at Subcritical Reynolds Numbers

This work experimentally investigated the flow phenomena and vortex structures in the wake of a sphere located in a water loop at Reynolds numbers of Re = 850, 1,250, and 1,700. Velocity fields in the wake region were obtained by applying the time-resolved stereoscopic particle image velocimetry (TR-SPIV) technique. From the acquired TR-SPIV velocity vector fields, the statistical values of mean and fluctuating velocities were computed. Spectral analysis, two-point velocity–velocity cross-correlation, proper orthogonal decomposition (POD) and vortex identification analyses were also performed. The velocity fields show a recirculation region that decreases in length with an increase of Reynolds numbers. The power spectra from the spectral analysis had peaks corresponding to a Strouhal number of St = 0.2, which is a value commonly found in the literature studies of flow over a sphere. The two-point cross-correlation analysis revealed elliptical structures in the wake, with estimated integral length scales ranging between 12% and 63% of the sphere diameter. The POD analysis revealed the statistically dominant flow structures that captured the most flow kinetic energy. It is seen that the flow kinetic energy captured in the smaller scale flow structures increased as Reynolds number increased. The POD modes contained smaller structure as the Reynolds number increased and as mode order increased. In addition, spectral analysis performed on the POD temporal coefficients revealed peaks corresponding to St = 0.2, similar to the spectral analysis on the fluctuating velocity. The ability of POD to produce low-order reconstructions of the flow was also utilized to facilitate vortex identification analysis, which identified average vortex sizes of 0.41D for Re1, 0.33D for Re2, and 0.32D for Re3.

Engineering↗

Robust Containment Queries over Collections of Rational Parametric Curves via Generalized Winding Numbers

Point containment queries for regions bound by watertight geometric surfaces, i.e., closed and without self-intersections, can be evaluated straightforwardly with a number of well-studied algorithms. When this assumption on domain geometry is not met, such methods are either unusable, or prone to misclassifications that can lead to cascading errors in downstream applications. More robust point classification schemes based on generalized winding numbers have been proposed, as they are indifferent to these imperfections. However, existing algorithms are limited to point clouds and collections of linear elements. We extend this methodology to encompass more general curved shapes with an algorithm that evaluates the winding number scalar field over unstructured collections of rational parametric curves. In particular, we evaluate the winding number for each curve independently, making the derived containment query robust to how the curves are arranged. We ensure geometric fidelity in our queries by treating each curve as equivalent to an adaptively constructed polyline that provably has the same generalized winding number at the point of interest. Our algorithm is numerically stable for points that are arbitrarily close to the model, and explicitly treats points that are coincident with curves. We demonstrate the improvements in computational performance granted by this method over conventional techniques as well as the robustness induced by its application.

97 MATHEMATICS AND COMPUTING↗

Toward Establishing Uniqueness of Experimentally Determined Transference Numbers

The passage of current through a battery results in the development of concentration gradients in the electrolytic phase. For a fully characterized binary electrolyte, where the conductivity, salt diffusion coefficient, cation transference number, and the thermodynamic factor are known, concentration and potential gradients in the electrolytic phase can be modeled using Newman’s concentrated solution theory. We report two methods for measuring the transference number: the standard method based on electrochemical measurements ( t + , echem 0 ) and electrophoretic NMR ( t + , eNMR 0 ). The electrochemical approach requires combining measurements from multiple experiments; the equations used to determine the cation transference number and the thermodynamic factor are coupled, nonlinear algebraic equations. In the electrophoretic-NMR-based approach, however, the equations used to determine the cation transference number and the thermodynamic factor are decoupled. We find for a liquid electrolyte comprised of a lithium salt dissolved in tetraglyme, the values of the transference numbers obtained by these two methods are distinct. For example, at 30 °C, t + , echem 0 = −1.02 ± 1.11 and t + , eNMR 0 = 0.25 ± 0.04. The corresponding thermodynamic factors are also different. While the magnitude of the predicted concentration gradients based on the two sets of parameters are different, the predicted current-voltage relationships are similar.

Hickson, Darby T. (ORCID:0000000251339755)↗

Photonuclear Reaction Types Map to ENDF Reaction Type Numbers MT

In the ENDF format, photonuclear cross secCons are stored in File = 3 under the NSUB = 0 sub-library. The type of reacCon data and the products resulCng from that reacCon are idenCfied by an integer number from 1 to 999, called MT number. However, the ENDF manual is wriPen with a strong focus on neutron induced reacCons and the meaning of MT numbers in the context of photonuclear reacCons can be at Cmes confusing and the assessment of evaluated photonuclear data may require summing various MT numbers to obtain the desired cross secCons to compare with experimental data. An important step in assessing the quality of evaluated data for photonuclear cross secCons is therefore to clarify the mapping between MT numbers and the nomenclature used to describe photonuclear reacCons in the literature. The intent of this document is to provide such a map.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Measuring the Speed of Sound Using Cumulants of Baryon Number

Here, we show that the values of the first three cumulants of the baryon number distribution can be used to calculate the isothermal speed of sound and its logarithmic derivative with respect to the baryon-number density. We discuss applications of this result to heavy-ion collision experiments and address possible challenges, including effects due to baryon-number conservation, differences between proton and baryon cumulants, and the influence of finite-number statistics on fluctuation observables in both ex periment and hadronic transport simulations. In particular, we investigate the relation between quantities calculated in infinite, continuous matter, and observables obtained in simulations using a finite number of particles.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Calculation of machine precision second order derivatives using dual-complex numbers

It is well known that both complex and dual numbers can be employed to obtain machine precision first-order derivatives; however, neither, on their own, can compute machine precision 2nd order derivatives. To address this limitation, it is demonstrated in this paper that combined dual-complex numbers can be used to compute machine precision 1st and 2nd order derivatives. The dual-complex approach is simpler than utilizing multicomplex or hyper-dual numbers as existing dual libraries can be used as is or easily augmented to accept complex numbers, and the complexity of developing, integrating, and deploying multicomplex or hyper-dual libraries is avoided. The efficacy of this approach is demonstrated for both univariate and multivariate functions. Finally, source code examples using the Python, Julia, and Mathematica languages are provided as supplemental material.

97 MATHEMATICS AND COMPUTING↗

Searches for baryon number violation in neutrino experiments: a white paper

Abstract Baryon number conservation is not guaranteed by any fundamental symmetry within the standard model, and therefore has been a subject of experimental and theoretical scrutiny for decades. So far, no evidence for baryon number violation has been observed. Large underground detectors have long been used for both neutrino detection and searches for baryon number violating processes. The next generation of large neutrino detectors will seek to improve upon the limits set by past and current experiments and will cover a range of lifetimes predicted by several Grand Unified Theories. In this White Paper, we summarize theoretical motivations and experimental aspects of searches for baryon number violation in neutrino experiments.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Magnetic tunnel junction random number generators applied to dynamically tuned probability trees driven by spin orbit torque

Abstract Perpendicular magnetic tunnel junction (pMTJ)-based true-random number generators (RNGs) can consume orders of magnitude less energy per bit than CMOS pseudo-RNGs. Here, we numerically investigate with a macrospin Landau–Lifshitz-Gilbert equation solver the use of pMTJs driven by spin–orbit torque to directly sample numbers from arbitrary probability distributions with the help of a tunable probability tree. The tree operates by dynamically biasing sequences of pMTJ relaxation events, called ‘coinflips’, via an additional applied spin-transfer-torque current. Specifically, using a single, ideal pMTJ device we successfully draw integer samples on the interval [0, 255] from an exponential distribution based on p -value distribution analysis. In order to investigate device-to-device variations, the thermal stability of the pMTJs are varied based on manufactured device data. It is found that while repeatedly using a varied device inhibits ability to recover the probability distribution, the device variations average out when considering the entire set of devices as a ‘bucket’ to agnostically draw random numbers from. Further, it is noted that the device variations most significantly impact the highest level of the probability tree, with diminishing errors at lower levels. The devices are then used to draw both uniformly and exponentially distributed numbers for the Monte Carlo computation of a problem from particle transport, showing excellent data fit with the analytical solution. Finally, the devices are benchmarked against CMOS and memristor RNGs, showing faster bit generation and significantly lower energy use.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Search for Baryon Number Violation in Top Quark Production and Decay Using Proton-Proton Collisions at $\sqrt{𝑠}$ = 13 TeV

A search is presented for baryon number violating interactions in top quark production and decay. The analysis uses data from proton-proton collisions at a center-of-mass energy of 13 TeV, collected with the CMS detector at the LHC with an integrated luminosity of 138 fb −1 . Candidate events are selected by requiring two oppositely charged leptons (electrons or muons) and exactly one jet identified as originating from a bottom quark. Multivariate discriminants are used to separate the signal from the background. No significant deviation from the standard model prediction is observed. Upper limits are placed on the strength of baryon number violating couplings. For the first time the production of single top quarks via baryon number violating interactions is studied. This allows the search to set the most stringent constraints to date on the branching fraction of the top quark decay to a lepton, an up-type quark (𝑢 or 𝑐), and a down-type quark (𝑑, 𝑠, or 𝑏). The results improve the previous bounds by 3 to 6 orders of magnitude based on the fermion flavor combination of the baryon number violating interactions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Carrier-assisted One-pot Sample Preparation for Targeted Proteomics Analysis of Small Numbers of Human Cells

Protein analysis of small numbers of human cells is primarily achieved by targeted proteomics with antibody-based immunoassays, which have inherent limitations (e.g., low multiplex and unavailability of antibodies for new proteins). Mass spectrometry (MS)-based targeted proteomics has emerged as an alternative because it is antibody-free, high multiplex, and has high specificity and quantitation accuracy. Recent advances in MS instrumentation make MS-based targeted proteomics possible for multiplexed quantification of highly abundant proteins in single cells. However, there is a technical challenge for effective processing of single cells with minimal sample loss for MS analysis. To address this issue, we have recently developed a convenient protein carrier-assisted one-pot sample preparation coupled with liquid chromatography (LC) - selected reaction monitoring (SRM) termed cLC-SRM for targeted proteomics analysis of small numbers of human cells. This method capitalizes on using the combined excessive exogenous protein as a carrier and low-volume one-pot processing to greatly reduce surface adsorption losses as well as high-specificity LC-SRM to effectively address the increased dynamic concentration range due to the addition of exogeneous carrier protein. Its utility has been demonstrated by accurate quantification of most moderately abundant proteins in small numbers of cells (e.g., 10-100 cells) and highly abundant proteins in single cells. The easy-to-implement features and no need for specific devices make this method readily accessible to most proteomics laboratories. In this study, we have provided a detailed protocol for cLC-SRM analysis of small numbers of human cells including cell sorting, cell lysis and digestion, LC-SRM analysis, and data analysis. Further improvements in detection sensitivity and sample throughput are needed towards targeted single-cell proteomics analysis. We anticipate that cLC-SRM will be broadly applied to biomedical research and systems biology with the potential of facilitating precision medicine.

60 APPLIED LIFE SCIENCES↗

The Transference Number

The performance of rechargeable batteries and other electrochemical systems depends on the rate at which the working ion (often a cation) is transported from one electrode to the other. The cation transference number is an important transport parameter that affects this rate. The purpose of this perspective is to distinguish between approximate and rigorous methods used in the literature to measure the transference number. We emphasize the fact that this parameter is dependent on the reference frame used in the analysis; care must be taken when comparing values obtained from different sources to account for differences in reference frames. We present data obtained from a well‐characterized electrolyte. We compare rigorously determined transference numbers in two reference frames with values obtained by an approximate method. We conclude with a qualitative discussion of the relationship between the transference number and salt concentration gradients that are obtained when current is drawn through a battery.

Gao, Kevin W.↗

CFT correlators, $\mathcal{W}$-algebras and generalized Catalan numbers

In two spacetime dimensions the Virasoro heavy-heavy-light-light (HHLL) vacuum block in a certain limit is governed by the Catalan numbers. The equation for their generating function can be generalized to a differential equation which the logarithm of the block satisfies. We show that a similar story holds for the HHLL $\mathcal{W}_N$ vacuum blocks, where a suitable generalization of the Catalan numbers plays the main role. Moreover, the $\mathcal{W}_N$ blocks have the same form as the stress tensor sector of HHLL near lightcone conformal correlators in 2(N – 1) spacetime dimensions. In the latter case the Catalan numbers are generalized to the numbers of linear extensions of certain partially ordered sets.

1/N expansion↗

Indirect constraints on third generation baryon number violation

Abstract The non-observation of baryon number violation suggests that the scale of baryon-number violating interactions at zero temperature is comparable to the GUT scale. However, the pertinent measurements involve hadrons made of the first-generation quarks, such as protons and neutrons. One may therefore entertain the idea that new flavour physics breaks baryon number at a much lower scale, but only in the coupling to a third generation quark, leading to observable baryon-number violatingb-hadron decay rates. In this paper we show that indirect constraints on the new physics scale Λ BNV from the existing bounds on the proton lifetime do not allow for this possibility. For this purpose we consider the three dominant proton decay channelsp→$$ {\ell}^{+}{\nu}_{\ell}\overline{\nu} $$ ℓ + ν ℓ ν ¯ ,p→$$ {\pi}^{+}\overline{\nu} $$ π + ν ¯ andp→π 0 ℓ + mediated by a virtual bottom quark.

Physics↗

Reynolds number dependence of Lagrangian dispersion in direct numerical simulations of anisotropic magnetohydrodynamic turbulence

Large-scale magnetic fields thread through the electrically conducting matter of the interplanetary and interstellar medium, stellar interiors and other astrophysical plasmas, producing anisotropic flows with regions of high-Reynolds-number turbulence. It is common to encounter turbulent flows structured by a magnetic field with a strength approximately equal to the root-mean-square magnetic fluctuations. In this work, direct numerical simulations of anisotropic magnetohydrodynamic (MHD) turbulence influenced by such a magnetic field are conducted for a series of cases that have identical resolution, and increasing grid sizes up to $2048^3$ . The result is a series of closely comparable simulations at Reynolds numbers ranging from 1400 up to 21 000. We investigate the influence of the Reynolds number from the Lagrangian viewpoint by tracking fluid particles and calculating single-particle and two-particle statistics. The influence of Alfvénic fluctuations and the fundamental anisotropy on the MHD turbulence in these statistics is discussed. Single-particle diffusion curves exhibit mildly superdiffusive behaviours that differ in the direction aligned with the magnetic field and the direction perpendicular to it. Competing alignment processes affect the dispersion of particle pairs, in particular at the beginning of the inertial subrange of time scales. Scalings for relative dispersion, which become clearer in the inertial subrange for a larger Reynolds number, can be observed that are steeper than indicated by the Richardson prediction.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Onsager Transport Coefficients and Transference Numbers in Polyelectrolyte Solutions and Polymerized Ionic Liquids

Electrolytes featuring negatively charged polymers, such as nonaqueous polyelectrolyte solutions and polymerized ionic liquids, are currently under investigation as potential high cation transference number (t+) electrolytes for lithium-ion batteries. Herein, we use coarse-grained molecular dynamics simulations to characterize the Onsager transport coefficients of polyelectrolyte solutions as a function of chain length and concentration. For all the systems studied, we find that the rigorously computed transference number is substantially lower than that approximated by the ideal solution (Nernst-Einstein) equations typically used to characterize these systems due to the presence of strong anion-anion and cation-anion correlations. None of the polyelectrolyte solutions achieve t+ greater than that of the conventional binary salt electrolyte, with some solutions having negative t+. Overall, this work demonstrates that the Nernst-Einstein assumption does not provide a physically meaningful estimate of the transference number in these solutions and calls into question the expectation of polyelectrolytes to exhibit a high cation transference number.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Polymer Architecture-Induced Trade-off between Conductivities and Transference Numbers in Salt-Doped Polymeric Ionic Liquids

Recent experiments have demonstrated that polymeric ionic liquids that share the same cation and anion but possess different architectures can exhibit markedly different conductivity and transference number characteristics when doped with lithium salt. In this study, we used atomistic molecular simulations on polymer chemistries inspired by the experiments to probe the mechanistic origins underlying the competition between conductivity and transference numbers. Our results indicate that the architecture of the polycationic ionic liquid plays a subtle but crucial role in modulating the anion–cation interactions, especially their dynamical coordination characteristics. Chemistries leading to longer-lived anion–cation coordinations relative to lithium–anion coordinations lead to lower conductivities and higher transference numbers. Furthermore, our results suggest that higher conductivities are accompanied by lower transference numbers and vice versa, revealing that alternative approaches may need to be considered to break this trade-off in salt-doped polyILs.

33 ADVANCED PROPULSION SYSTEMS↗

Nucleoporin downregulation modulates progenitor differentiation independent of nuclear pore numbers

Nucleoporins (NUPs) comprise nuclear pore complexes, gateways for nucleocytoplasmic transport. As primary human keratinocytes switch from the progenitor state towards differentiation, most NUPs are strongly downregulated, with NUP93 being the most downregulated NUP in this process. To determine if this NUP downregulation is accompanied by a reduction in nuclear pore numbers, we leveraged Stochastic Optical Reconstruction Microscopy. No significant changes in nuclear pore numbers were detected using three independent NUP antibodies; however, NUP reduction in other subcellular compartments such as the cytoplasm was identified. To investigate how NUP reduction influences keratinocyte differentiation, we knocked down NUP93 in keratinocytes in the progenitor-state culture condition. NUP93 knockdown diminished keratinocytes’ clonogenicity and epidermal regenerative capacity, without drastically affecting nuclear pore numbers or permeability. Using transcriptome profiling, we identified that NUP93 knockdown induces differentiation genes related to both mechanical and immune barrier functions, including the activation of known NF-κB target genes. Consistently, keratinocytes with NUP93 knockdown exhibited increased nuclear localization of the NF-κB p65/p50 transcription factors, and increased NF-κB reporter activity. Taken together, these findings highlight the gene regulatory roles contributed by differential NUP expression levels in keratinocyte differentiation, independent of nuclear pore numbers.

54 ENVIRONMENTAL SCIENCES↗