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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 73 records · Page 4
All sourcesNASA NTRSDOE OSTI
DOE OSTI2019

Evaluating the role of Burkholderia pseudomallei K96243 toxins BPSS0390, BPSS0395, and BPSS1584 in persistent infection

Burkholderia pseudomallei is the causative agent of melioidosis, a disease with a mortality rate of up to 40% even with treatment. Despite the ability of certain antibiotics to control initial infection, relapse occurs in treated patients. The inability of antibiotics to clear this bacterial infection is in part due to persistence, an evasion mechanism against antibiotics and the effect of host defenses. Evaluation of antibiotic efficacy against B. pseudomallei revealed that up to 48% of in vitro grown populations can survive in a persister state. Toxin–antitoxin (TA) systems have been previously implicated in modulating bacterial persistence. Here, we generated three isogenic TA mutants and found that loss of each toxin gene did not alter antibiotic persistence or macrophage survival. In response to macrophage–induced persistence, all three toxin mutants demonstrated increased intracellular susceptibility to levofloxacin which in part was due to the inability of the mutants to induce persistence after nitric oxide or nutrient starvation. In an inhalational model of murine melioidosis, both ΔBPSS0395 and ΔBPSS1584 strains were attenuated, and treatment with levofloxacin led to significant reduction in lung colonisation and reduced splenic colonisation by ΔBPSS0395. Based on our findings, these toxins deserve additional evaluation as putative therapeutic targets.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Climatic controls on soil and saprock nitrogen distribution and persistence in the Sierra Nevada

Nitrogen (N) is an essential nutrient in soil that regulates plant growth, terrestrial sequestration of atmospheric carbon dioxide, and persistence of organic compounds. However, major knowledge gaps remain about how climate change may impact N accumulation and persistence, especially in deep soil and saprock (friable weakly weathered bedrock). Our objective was to understand how climate impacts the accumulation of N in soil and saprock and how climate impacts soil N distribution, persistence, and mechanisms of N persistence. We investigated N concentration in bulk soil and density fractions. We estimated N persistence along a bio-climatic sequence—sites range from a low-elevation oak savannah, mid-elevation pine-oak/mixed-conifer forest, to a high-elevation subalpine forest—in the southern Sierra Nevada in California. A combination of radiocarbon and elemental composition measurements along with a first-order kinetic model was used. The N concentration in the bulk soil and density fractions declined with depth, and there was a relatively greater mineral-associated heavy fraction (HF) N in deeper samples. The cooler/wetter mixed conifer site held 37% of profile N in saprock, which was greater than that of the entire soil profile at the drier/hotter oak savannah. The majority of N in soil, which was in the HF, was not influenced by climate proxies tested. However, both unprotected and occluded fractions of N were strongly influenced by climate. Soil N mean residence time (MRT) showed that drier/hotter climates have a shorter MRT, compared to mid-elevation sites with cooler/wetter climates. The effect of climate on deep saprock N storage might be indirect, primarily through climatic influence on the thickness of saprock. Overall, our findings suggest the mineral-associated HF N pool will not be vulnerable to changes in climate and will continue to contribute to the persistent soil N pool. The amount of topsoil and subsoil unprotected and occluded N can be explained by gross primary productivity and mean annual precipitation indicating that changes in climate can influence N partitioning. N stored in deep soil and saprock may be less vulnerable to climate than N stored in drier/hotter climates with less deeply stored N. It is critical to dig deeper to understand terrestrial ecosystems’ response to climate.

58 GEOSCIENCES↗
DOE OSTI2026

Persistence and potential of soil organic carbon in nature‐based climate solutions: A review of managed disturbances

Societal Impact Statement Implementing nature-based climate solutions is important for mitigating climate change, which is a global issue, but requires local adjustments in management practices. Using the association between soil carbon and minerals as a proxy for carbon persistence, we evaluated the effect of different management regimes on soil carbon sequestration and loss. We identified areas where management practices that increase carbon inputs should be prioritized and areas where management should focus on avoiding severe disturbances. Using this storage-potential-and-persistence framework to identify how to increase or maintain soil organic carbon storage locally will increase the effectiveness of nature-based climate solutions globally. Summary Increasing soil organic carbon storage could reduce the pace of climate change, but the longevity of this nature-based climate solution depends on the persistence of carbon in soils, not just the input rates into soils. We apply a framework for considering how soil carbon persistence—namely, via the association with minerals—sheds light on soil carbon sequestration. We review how management of disturbances, such as prescribed burning, forestry, and grazing, can change soil carbon storage, persistence, and potential. Past work demonstrated that management of disturbances can sequester soil carbon, but it remains unclear how the potential stabilization of that accrual and vulnerability to loss varies across disturbance types and geographies. We found that there is substantial geographical heterogeneity in the overlap among estimates of carbon accrual, disturbance occurrence, and potential stabilization: Fire-prone grasslands and intensively grazed rangelands occur in areas estimated to have high potential to store mineral-associated organic carbon, and studies also find that adjusted fire and grazing can promote mineral-associated organic carbon. Plantation forestry and burned area span large regions where particulate organic matter is the dominant form, and studies find that particulate organic carbon is disproportionately lost following intense wildfires and forest harvests. Thus, areas with high mineral-associated organic carbon deficits should be prioritized for practices that increase carbon inputs; whereas areas with high proportions of particulate organic carbon should be prioritized for practices that help to avoid severe disturbances. Taken together, the distribution of and changes in persistence mechanisms shed light on the durability of nature-based climate solutions.

fire↗
DOE OSTI2013

Persistent luminescence in Ba{sub 5}(PO{sub 4}){sub 3}Cl:Eu{sup 2+},R{sup 3+} (R = Y, La, Ce, Gd, Tb and Lu)

Graphical abstract: - Highlights: • The persistent luminescence in Ba{sub 5}(PO{sub 4}){sub 3}Cl:Eu{sup 2+},R{sup 3+} was reported. • The influences of auxiliary codopants was discussed. • The concentration quenching of persistent luminescence was discussed. - Abstract: We investigated the persistent luminescence in europium-doped barium chloroapatite upon codoping with auxiliary rare earth ions. Luminescence properties of the phosphors, including photoluminescence, luminescence decay, and thermoluminescence are systematically studied. We formulated a model of persistent luminescence on the basis of the experimental results. In our model, some Eu{sup 2+} ions are oxidized to Eu{sup 3+} under short UV excitation, and the released electrons are trapped at the positive defect. The persistent luminescence arises from the recombination of these trapped electrons with the photo-ionized Eu{sup 3+} ions. The influence of auxiliary codopants was discussed in terms of ionic potential and ionic radius. Eventually, the concentration quenching of persistent luminescence was reported and discussed.

36 MATERIALS SCIENCE↗
DOE OSTI2022

Microscale spatial distribution and soil organic matter persistence in top and subsoil

The spatial distribution of organic substrates and microscale soil heterogeneity significantly influence organic matter (OM) persistence as constraints on OM accessibility to microorganisms. However, it is unclear how changes in OM spatial heterogeneity driven by factors such as soil depth affect the relative importance of substrate spatial distribution on OM persistence. This work evaluated the decomposition and persistence of 13 C and 15 N labeled water-extractable OM inputs over 50 days as either hotspot (i.e., pelleted in 1–2 mm-size pieces) or distributed (i.e., added as OM < 0.07 μm suspended in water) forms in topsoil (0–0.2 m) and subsoil (0.8–0.9 m) samples of an Andisol. We observed greater persistence of added C in the subsoil with distributed OM inputs relative to hotspot OM, indicated by a 17% reduction in cumulative mineralization of the added C and a 10% higher conversion to mineral-associated OM. A lower substrate availability potentially reduced mineralization due to OM dispersion throughout the soil. NanoSIMS (nanoscale secondary ion mass spectrometry) analysis identified organo-mineral associations on cross-sectioned aggregate interiors in the subsoil. On the other hand, in the topsoil, we did not observe significant differences in the persistence of OM, suggesting that the large amounts of particulate OM already present in the soil outweighed the influence of added OM spatial distribution. Here, we demonstrated under laboratory conditions that the spatial distribution of fresh OM input alone significantly affected the decomposition and persistence of OM inputs in the subsoil. On the other hand, spatial distribution seems to play a lower role in topsoils rich in particulate OM. The divergence in the influence of OM spatial distribution between the top and subsoil is likely driven by differences in soil mineralogy and OM composition.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2018

A Physics-based Smart Persistence model for Intra-hour forecasting of solar radiation (PSPI) using GHI measurements and a cloud retrieval technique

Short-term solar forecasting models based solely on global horizontal irradiance (GHI) measurements are often unable to discriminate the forecasting of the factors affecting GHI from those that can be precisely computed by atmospheric models. Here, we introduce a Physics-based Smart Persistence model for Intra-hour forecasting of solar radiation (PSPI) that decomposes the forecasting of GHI into the computation of extraterrestrial solar radiation and solar zenith angle and the forecasting of cloud albedo and cloud fraction. The extraterrestrial solar radiation and solar zenith angle are accurately computed by the Solar Position Algorithm (SPA) developed at the National Renewable Energy Laboratory (NREL). A cloud retrieval technique is used to estimate cloud albedo and cloud fraction from surface-based observations of GHI. With the assumption of persistent cloud structures, the cloud albedo and cloud fraction are predicted for future time steps using a two-stream approximation and a 5-min exponential weighted moving average, respectively. Our model evaluation using the long-term observations of GHI at NREL's Solar Radiation Research Laboratory (SRRL) shows that the PSPI has a better performance than the persistence and smart persistence models in all forecast time horizons between 5 and 60 min, which is more significant in cloudy-sky conditions. Finally, compared to the persistence and smart persistence models, the PSPI does not require additional observations of various atmospheric parameters but is customizable in that additional observations, if available, can be ingested to further improve the GHI forecast. An advanced technology of cloud forecast is also expected to improve the future performance of the PSPI.

14 SOLAR ENERGY↗
DOE OSTI2016

Persister formation in Staphylococcus aureus is associated with ATP depletion

Persisters are dormant phenotypic variants of bacterial cells that are tolerant to killing by antibiotics1. Persisters are associated with chronic bacterial infection and antibiotic treatment failure. In Escherichia coli, toxin/antitoxin (TA) modules are responsible for persister formation. The mechanism of persister formation in Gram positive bacteria is unknown. Staphylococcus aureus is a major human pathogen, responsible for a variety of chronic and relapsing infections such as osteomyelitis, endocarditis and infections of implanted devices. Deleting TA modules in S. aureus did not affect the level of persisters. Here we show that S. aureus persisters are produced due to a stochastic entrance to stationary phase accompanied by a drop in intracellular ATP. Cells expressing stationary state markers are present throughout the growth phase, increasing in frequency with cell density. Cell sorting revealed that expression of stationary markers was associated with a 100-1000 fold increased likelihood of survival to antibiotic challenge. We find that the antibiotic tolerance of these cells is due to a drop in intracellular ATP. The ATP level of the cell is predictive of bactericidal antibiotic efficacy and explains bacterial tolerance to antibiotic treatment.

Conlon, Brian P. (ORCID:0000000221558375)↗
DOE OSTI2018

Increased mortality in mice following immunoprophylaxis therapy with high dosage of nicotinamide in Burkholderia persistent infections

Bacterial persistence, known as non-inherited antibacterial resistance, is a contributing factor to the establishment of long-lasting chronic bacterial infections. In this study, we examined the ability of nicotinamide (NA) to potentiate different classes of antibiotics against Burkholderia thailandensis persister cells. Here we demonstrate that addition of NA in in vitro models of B. thailandensis infection resulted in a significant depletion of the persister population in response to various classes of antibiotics. We applied microfluidic bioreactors with a continuous media flow to study the effect of supplementation with a NA gradient on the recovery of B. thailandensis persister populations. A co-culture of human neutrophils pre-activated with 50 µM NA and B. thailandensis resulted in the most efficient reduction in the persister population. Applying single cell RNA FISH analysis and quantitative PCR, we found that NA inhibited gene expression of the stringent response regulator relA , implicated in the regulation of the persister metabolic state. In conclusion, we also demonstrate that a therapeutic dose of NA (250mg/kg), previously applied as immunoprophylaxis against antibiotic-resistant bacterial species, produced adverse effects in an in vivo murine infection model of the highly pathogenic Burkholderia pseudomallei , indicating that therapeutic dose and metabolite effects have to be carefully evaluated and tailored for every case of potential clinical application.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2017

Increased Quasi Stationarity and Persistence of Winter Ural Blocking and Eurasian Extreme Cold Events in Response to Arctic Warming. Part I: Insights from Observational Analyses

Abstract Part I of this study examines the relationship among winter cold anomalies over Eurasia, Ural blocking (UB), and the background conditions associated with Arctic warming over the Barents and Kara Seas (BKS) using reanalysis data. It is found that the intensity, persistence, and occurrence region of UB-related Eurasian cold anomalies depend strongly on the strength and vertical shear (VS) of the mean westerly wind (MWW) over mid–high-latitude Eurasia related to BKS warming. Observational analysis reveals that during 1951–2015 UB days are 64% (54%) more frequent during weak MWW (VS) winters, with 26.9 (28.4) days per winter, than during strong MWW (VS) winters. During weak MWW or VS winters, as frequently observed during 2000–15, persistent and large UB-related warming is seen over the BKS together with large and widespread midlatitude Eurasian cold anomalies resulting from increased quasi stationarity and persistence of the UB. By contrast, when the MWW or VS is strong as frequently observed during 1979–99, the cold anomaly is less intense and persistent and confined to a narrow region of Europe because of a rapid westward movement of the strong UB. For this case, the BKS warming is relatively weak and less persistent. The midlatitude cold anomalies are maintained primarily by reduced downward infrared radiation (IR), while the surface heat fluxes, IR, and advection all contribute to the BKS warming. Thus, the large BKS warming since 2000 weakens the meridional temperature gradient, MWW, and VS, which increases quasi stationarity and persistence of the UB (rather than its amplitude) and then leads to more widespread Eurasian cold events and further enhances the BKS warming.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2017

Increased Quasi Stationarity and Persistence of Winter Ural Blocking and Eurasian Extreme Cold Events in Response to Arctic Warming. Part II: A Theoretical Explanation

In Part I of this study, it was shown that the Eurasian cold anomalies related to Arctic warming depend strongly on the quasi stationarity and persistence of the Ural blocking (UB). The analysis here revealed that under weak mean westerly wind (MWW) and vertical shear (VS) (quasi barotropic) conditions with weak synoptic-scale eddies and a large planetary wave anomaly, the growth of UB is slow and its amplitude is small. For this case, a quasi-stationary and persistent UB is seen. However, under strong MWW and VS (quasi baroclinic) conditions, synoptic-scale eddies are stronger and the growth of UB is rapid; the resulting UB is less persistent and has large amplitude. In this case, a marked retrogression of the UB is observed. The dynamical mechanism behind the dependence of the movement and persistence of UB upon the background conditions is further examined using a nonlinear multiscale model. The results show that when the blocking has large amplitude under quasi-baroclinic conditions, the blocking-induced westward displacement greatly exceeds the strong mean zonal-wind-induced eastward movement and hence generates a marked retrogression of the blocking. By contrast, under quasi-barotropic conditions because the UB amplitude is relatively small the blocking-induced westward movement is less distinct, giving rise to a quasi-stationary and persistent blocking. It is further shown that the strong mid–high-latitude North Atlantic mean zonal wind is the quasi-barotropic condition that suppresses UB’s retrogression and thus is conducive to the quasi stationarity and persistence of the UB. The model results show that the blocking duration is longer when the mean zonal wind in the blocking region or eddy strength is weaker.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Microbial colonization and persistence in deep fractured shales is guided by metabolic exchanges and viral predation

Background: Microbial colonization of subsurface shales following hydraulic fracturing offers the opportunity to study coupled biotic and abiotic factors that impact microbial persistence in engineered deep subsurface ecosystems. Shale formations underly much of the continental USA and display geographically distinct gradients in temperature and salinity. Complementing studies performed in eastern USA shales that contain brine-like fluids, here we coupled metagenomic and metabolomic approaches to develop the first genome-level insights into ecosystem colonization and microbial community interactions in a lower-salinity, but high-temperature western USA shale formation. Results: We collected materials used during the hydraulic fracturing process (i.e., chemicals, drill muds) paired with temporal sampling of water produced from three different hydraulically fractured wells in the STACK (Sooner Trend Anadarko Basin, Canadian and Kingfisher) shale play in OK, USA. Relative to other shale formations, our metagenomic and metabolomic analyses revealed an expanded taxonomic and metabolic diversity of microorganisms that colonize and persist in fractured shales. Importantly, temporal sampling across all three hydraulic fracturing wells traced the degradation of complex polymers from the hydraulic fracturing process to the production and consumption of organic acids that support sulfate- and thiosulfate-reducing bacteria. Furthermore, we identified 5587 viral genomes and linked many of these to the dominant, colonizing microorganisms, demonstrating the key role that viral predation plays in community dynamics within this closed, engineered system. Lastly, top-side audit sampling of different source materials enabled genome-resolved source tracking, revealing the likely sources of many key colonizing and persisting taxa in these ecosystems. Conclusions: These findings highlight the importance of resource utilization and resistance to viral predation as key traits that enable specific microbial taxa to persist across fractured shale ecosystems. We also demonstrate the importance of materials used in the hydraulic fracturing process as both a source of persisting shale microorganisms and organic substrates that likely aid in sustaining the microbial community. Moreover, we showed that different physicochemical conditions (i.e., salinity, temperature) can influence the composition and functional potential of persisting microbial communities in shale ecosystems. Together, these results expand our knowledge of microbial life in deep subsurface shales and have important ramifications for management and treatment of microbial biomass in hydraulically fractured wells.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2016

A SIMPLE EVOLUTIONAL MODEL OF THE UV HABITABLE ZONE AND THE POSSIBILITY OF PERSISTENT LIFE EXISTENCE: THE EFFECTS OF MASS AND METALLICITY

In addition to the habitable zone (HZ), the UV habitable zone (UV-HZ) is important when considering the existence of persistent life in the universe. The UV-HZ is defined as the area where the UV radiation field from a host star is moderate for persistent life existence. This is because UV is necessary for the synthesis of biochemical compounds. The UV-HZ must overlap the HZ when life appears and evolves. In this paper, following our previous study of the HZ, we examine the UV-HZ in cases with a stellar mass range from 0.08 to 4.00 M {sub ☉} with various metallicities during the main sequence phase. This mass range was chosen because we are interested in an environment similar to that of Earth. The effect of metallicity is reflected in the spectrum of the host stars, and we reexamine it in the context of the UV-HZ. The present work shows the effect of metallicity when that in the UV-HZ is less than that in the HZ. Furthermore, we find that the chance of persistent life existence declines as the metallicity decreases, as long as the UV radiation is not protected and/or boosted by any mechanisms. This is because the overlapped region of a persistent HZ and UV-HZ decreases. We find that the most appropriate stellar mass for the persistence of life existence is from 1.0 to 1.5 M {sub ☉} with metallicity Z = 0.02, and only about 1.2 M {sub ☉} with Z = 0.002. When Z = 0.0002, the chance of persistent life existence is very low, assuming that the ocean does not protect the life from UV radiation.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2017

Distributed metadata servers for cluster file systems using shared low latency persistent key-value metadata store

A cluster file system is provided having a plurality of distributed metadata servers with shared access to one or more shared low latency persistent key-value metadata stores. A metadata server comprises an abstract storage interface comprising a software interface module that communicates with at least one shared persistent key-value metadata store providing a key-value interface for persistent storage of key-value metadata. The software interface module provides the key-value metadata to the at least one shared persistent key-value metadata store in a key-value format. The shared persistent key-value metadata store is accessed by a plurality of metadata servers. A metadata request can be processed by a given metadata server independently of other metadata servers in the cluster file system. A distributed metadata storage environment is also disclosed that comprises a plurality of metadata servers having an abstract storage interface to at least one shared persistent key-value metadata store.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2017

The Computational Complexity of Multidimensional Persistence

We present findings on the computational complexity of computing multidimensional persistent homology. We first show that the worst-case computational complexity of multidimensional persistence is exponential. We then present an algorithm for computing multidimensional persistence which extends the algorithm given by Zomorodian and Carlsson for computing one-dimensional persistence. The computational complexity of our algorithm is polynomial in the size of the persistence module and exponential in the persistence dimension.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2019

Persistent Supercooled Drizzle at Temperatures Below -25 °C Observed at McMurdo Station, Antarctica

The rarity of reports in the literature of brief and spatially limited observations of drizzle at temperatures below -20 degrees C suggest that riming and other temperature-dependent cloud microphysical processes such as heterogeneous ice nucleation and ice crystal depositional growth prevent drizzle persistence in cold environments. In this study, we report on a persistent drizzle event observed by ground-based remote sensing measurements at McMurdo Station, Antarctica. The temperatures in the drizzle-producing cloud were below -25 degrees C and the drizzle persisted for a period exceeding 7.5 hr. Using ground-based, satellite, and reanalysis data, we conclude that drizzle was likely present in parts of a widespread cloud field, which stretched more than similar to 1,000 km along the Ross Ice Shelf coast. Parameter space sensitivity tests using two-moment bulk microphysics in large eddy simulations constrained by the observations suggest that activated ice freezing nuclei and accumulation-mode aerosol number concentrations aloft during this persistent drizzle period were likely on the order of 0.2 L-1 and 20 cm -3 , respectively. In such constrained simulations, the drizzle moisture flux through cloud base exceeds that of ice. The simulations also indicate that drizzle can lead to the formation of multiple peaks in cloud water content profiles. This study suggests that persistent drizzle at these low temperatures may be common at the low aerosol concentrations typical of the Antarctic and Southern Ocean atmospheres.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

MOSIQS: Persistent Memory Object Storage With Metadata Indexing and Querying for Scientific Computing

Scientific applications often require high-bandwidth shared storage to perform joint simulations and collaborative data analytics. Shared memory pools provide a chance to satisfy such needs. Recently, a high-speed network such as Gen-Z utilizing persistent memory (PM) offers an opportunity to create a shared memory pool connected to compute nodes. However, there are several challenges to use scientific applications on the shared memory pool directly such as scalability, failure-atomicity, and lack of scientific metadata-based search and query. In this paper, we propose MOSIQS, a persistent memory object storage framework with metadata indexing and querying for scientific computing. We design MOSIQS based on the key idea that memory objects on PM pool can live beyond the application lifetime and can become the sharing currency for applications and scientists. MOSIQS provides an aggregate memory pool atop an array of persistent memory devices to store and access memory objects to accelerate scientific computing. MOSIQS uses a lightweight persistent memory key-value store to manage the metadata of memory objects, which enables memory object sharing. To facilitate metadata search and query over millions of memory objects resident on memory pool, we introduce Group Split and Merge (GSM), a novel persistent index data structure designed primarily for scientific datasets. GSM splits and merges dynamically to minimize the query search space and maintains low query processing time while overcoming the index storage overhead. MOSIQS is implemented on top of PMDK. We evaluate the proposed approach on many-core server with an array of real PM devices. Experimental results show that MOSIQS gains a 100% write performance improvement and executes multi-attribute queries efficiently with 2.7× less index storage overhead offering significant potential to speed up scientific computing applications.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2023

Malicious Cyber Activity Detection using Zigzag Persistence

In this study we synthesize zigzag persistence from topological data analysis with autoencoder-based approaches to detect malicious cyber activity, and derive analytic insights. Cybersecurity aims to safeguard computers, networks, and servers from various forms of malicious attacks, including network damage, data theft, and activity monitoring. We focus on the cybersecurity domain and investigate the detection of malicious activity using log data. We consider the dynamics of the log data and explore the changing topology of a hypergraph representation of this data to gain insights into the underlying activity. These hypergraphs capture complex interactions between processes, together with their temporal information. To study the changing topology we use zigzag persistence, which captures how topological features persist at multiple dimensions over time. We observe that this detects malicious activity in a cyber data set. To automate this detection we implement an autoencoder trained on a vectorization of the resulting zigzag persistence barcodes. Our experimental results demonstrate the effectiveness of the autoencoder in detecting malicious activity. Overall, this study highlights the potential of zigzag persistence and its combination with temporal hypergraphs for analyzing cybersecurity log data and detecting malicious behavior.

hypergraphs, temporal hypergraph, topological data↗
DOE OSTI2018

SmpB down-regulates proton-motive force for the persister tolerance to aminoglycosides in Aeromonas veronii

Highlights: • The smpB deletion exhibited a higher susceptibility to aminoglycosides in A. veronii. • The expression level of SmpB was enhanced by gentamicin challenge. • The effect of SmpB on persistence formation was eliminated by PMF inhibition. • The smpB deletion downregulated proton-motive force-related metabolic genes. Bacterial persisters comprise a small fraction of phenotypically heterogeneous variants with transient capability for survival when exposed to high concentrations of antibiotic. In aquatic pathogenic bacteria Aeromonas veronii, Small Protein B (SmpB), the core factor of trans-translation system, was identified as a new persistence-related gene. The SmpB deletion exhibited a higher susceptibility and lower persister cell formation under aminoglycosides antibiotics pressure compared with wild type. The transcriptional and translational activities of smpB gene were significantly enhanced by the gentamicin challenge in exponential phase, but not changed in stationary phase. The transcriptomic analysis revealed that the smpB deletion stimulated the production of proton-motive force (PMF). The cell survival induced by carbonyl cyanide m-chlorophenyl hydrazone (CCCP) further verified that SmpB variation affected the quantities of PMF. Taken together, these results uncovered a novel mechanism of persister formation mediated by SmpB under aminoglycosides treatments.

60 APPLIED LIFE SCIENCES↗