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At least 73 records · Page 4
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

Protoplast-Based Transient Expression and Gene Editing in Shrub Willow ( Salix purpurea L .)

Shrub willows (Salix section Vetrix) are grown as a bioenergy crop in multiple countries and as ornamentals across the northern hemisphere. To facilitate the breeding and genetic advancement of shrub willow, there is a strong interest in the characterization and functional validation of genes involved in plant growth and biomass production. While protocols for shoot regeneration in tissue culture and production of stably transformed lines have greatly advanced this research in the closely related genus Populus, a lack of efficient methods for regeneration and transformation has stymied similar advancements in willow functional genomics. Moreover, transient expression assays in willow have been limited to callus tissue and hairy root systems. Here we report an efficient method for protoplast isolation from S. purpurea leaf tissue, along with transient overexpression and CRISPR-Cas9 mediated mutations. This is the first such report of transient gene expression in Salix protoplasts as well as the first application of CRISPR technology in this genus. These new capabilities pave the way for future functional genomics studies in this important bioenergy and ornamental crop.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Topographical Controls on Hillslope-Scale Hydrology Drive Shrub Distributions on the Seward Peninsula, Alaska: Modeling Archive

The dataset is a model output used in a study that examined the role topography plays in determining shrub expansion by applying a coupled transect version of a mechanistic ecosystem model (ecosys) in a tundra hillslope site in the Seward Peninsula, Alaska. The study highlights the importance of mechanistically representing hillslope-scale coupled surface and sub-surface hydrology to accurately predict current plant distributions and future trajectories in Arctic ecosystems. The dataset contain ecosys model outputs used in a study: Article Title - Topographical Controls on Hillslope-Scale Hydrology Drive Shrub Distributions on the Seward Peninsula, Alaska. It includes the data files (ten *.csv files) used in creating figures in the publication and three *.pdf files (user guide and two Supplementary Information documents).The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS1970

Identification and measurement of shrub type vegetation on large scale aerial photography

Important range-shrub species were identified at acceptable levels of accuracy on large-scale 70 mm color and color infrared aerial photographs. Identification of individual shrubs was significantly higher, however, on color infrared. Photoscales smaller than 1:2400 had limited value except for mature individuals of relatively tall species, and then only if crown margins did not overlap and sharp contrast was evident between the species and background. Larger scale photos were required for low-growing species in dense stands. The crown cover for individual species was estimated from the aerial photos either with a measuring magnifier or a projected-scale micrometer. These crown cover measurements provide techniques for earth-resource analyses when used in conjunction with space and high-altitude remotely procured photos.

Driscoll, R. S.↗
DOE OSTI2023

De Novo Assembly and Annotation of 11 Diverse Shrub Willow (Salix) Genomes Reveals Novel Gene Organization in Sex-Linked Regions

Poplar and willow species in the Salicaceae are dioecious, yet have been shown to use different sex determination systems located on different chromosomes. Willows in the subgenus Vetrix are interesting for comparative studies of sex determination systems, yet genomic resources for these species are still quite limited. Only a few annotated reference genome assemblies are available, despite many species in use in breeding programs. Here we present de novo assemblies and annotations of 11 shrub willow genomes from six species. Copy number variation of candidate sex determination genes within each genome was characterized and revealed remarkable differences in putative master regulator gene duplication and deletion. We also analyzed copy number and expression of candidate genes involved in floral secondary metabolism, and identified substantial variation across genotypes, which can be used for parental selection in breeding programs. Lastly, we report on a genotype that produces only female descendants and identified gene presence/absence variation in the mitochondrial genome that may be responsible for this unusual inheritance.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Impact of landscape design on the greenhouse gas emissions of shrub willow bioenergy buffers in a US Midwest corn-production landscape

Previous studies have evaluated the economics and ecosystem services of perennial bioenergy crops when replacing grain crops on marginal (environmentally critical and/or underproductive) lands. This study used life-cycle analysis (LCA) to investigate the greenhouse gas (GHG) emissions of perennial crops when grown in targeted landscape positions and their impact in reducing nitrogen leaching. Specifically, LCA was performed to evaluate the GHG emissions of growing shrub willow on marginal lands in the Indian Creek watershed in Illinois to assess the sustainability of strategically planted willow buffer strips. Willow was grown as a short-rotation woody crop with a 21-year rotation under three scenarios including a business-as-usual (BAU) field-scale production with nitrogen fertilizer application and two unfertilized subfield buffer scenarios – landscape single subfield (LSSF) or landscape multiple subfields (LMSF) – grown alongside cornfields to reduce nitrate leaching. Each scenario also considers three field sizes, 2.0, 10.1, and 40.5 ha. The average annual GHG emissions from willow production and depot transportation were 0.32–0.77 Mg-CO 2 e ha-1 with the lowest emissions for the LSSF scenario and highest for the BAU. The GHG emissions for the LSSF and BAU scenarios are independent of field size, whereas LMSF emissions increase with increasing field size, 0.41 Mg-CO 2 e ha-1 at 2.0 ha and 0.76 Mg-CO 2 e ha-1 at 40.5 ha. Emission results were most sensitive to the willow yield, followed by fertilizer application rate (BAU only), harvest fuel consumption, and transportation distance.

09 BIOMASS FUELS↗
DOE OSTI2020

Natural selection maintains species despite frequent hybridization in the desert shrub Encelia

Natural selection is an important driver of genetic and phenotypic differentiation between species. For species in which potential gene flow is high but realized gene flow is low, adaptation via natural selection may be a particularly important force maintaining species. For a recent radiation of New World desert shrubs ( Encelia : Asteraceae), we use fine-scale geographic sampling and population genomics to determine patterns of gene flow across two hybrid zones formed between two independent pairs of species with parapatric distributions. After finding evidence for extremely strong selection at both hybrid zones, we use a combination of field experiments, high-resolution imaging, and physiological measurements to determine the ecological basis for selection at one of the hybrid zones. Our results identify multiple ecological mechanisms of selection (drought, salinity, herbivory, and burial) that together are sufficient to maintain species boundaries despite high rates of hybridization. Given that multiple pairs of Encelia species hybridize at ecologically divergent parapatric boundaries, such mechanisms may maintain species boundaries throughout Encelia .

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Topography and Functional Traits Control the Distribution of Key Shrub Plant Functional Types in Low-Arctic Tundra: Supporting Data

High-resolution classification maps derived from occupied aerial systems (UASs). The UAS data were collected in August 2021 using a Skydio 2+ drone equipped with a 4K resolution red-green-blue (RGB) camera (2024 Skydio Inc) and a 3DR SOLO Quadcopter carried a Parrot Sequoia+ Multispectral Sensor (2023 Parrot Drone SAS). This package includes vegetation classification maps at four locations around Next Generation Ecosystem Experiment Arctic (NGEE Arctic) Council watershed study site on the Seward Peninsula, Alaska. The classification maps were generated using a combination of RGB and canopy height information. The map data and metadata are provided as ENVI image (.dat) and text (.txt, *hdr) formats. Additional map quicklooks are provided as GIS *.kml files. These datasets are provided in support of Yang et al., (In review), “Topography and Functional Traits Control the Distribution of Key Shrub Plant Functional Types in Low-Arctic Tundra”.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a 15-year research effort (2012-2027) to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2026

SPRUCE Bud Cold Hardiness of Trees and Shrubs in Experimental Plots, Marcell Experimental Forest, Minnesota, 2021-2025

This dataset contains bud cold hardiness measurements from the Spruce and Peatland Responses Under Changing Environments (SPRUCE) experimental site (Hanson et al, 2017) within the Marcell Experimental Forest in northern Minnesota, USA. Cold hardiness was quantified as the temperature at which low temperature exotherms (LTEs) were identified (i.e., the temperature at which supercooled water within a bud freezes) measured by differential thermal analysis (DTA). Buds were sampled at semi-regular intervals from September 2021 through May 2025 (2021-09-25 to 2025-05-21) across four seasons (2021-2022 through 2024-2025) for four co-occurring boreal peatland tree and shrub species: Picea mariana (PIMA), Larix laricina (LALA), Rhododendron groenlandicum (RHGR), and Chamaedaphne calyculata (CHCA). Samples were collected across the experiment's warming gradient (ambient to +9 degrees Celsius (C)) and pooled by species within each enclosure. These data were used to assess the species- and season-specific effects of experimental warming on cold hardiness and cold damage risk in boreal peatland vegetation (Campos-Arguedas et al, accepted). This dataset contains one data file in comma-separate values (*.csv) format. Additional metadata are provided: a data dictionary and a file-level metadata file in comma-separate values (*.csv) format and a user guide in PDF (*.pdf) format.

Chamaedaphne calyculata↗
DOE OSTI2025

SPRUCE: Shrub-Layer Vegetation Biomass Collection Metadata, Marcell Experimental Forest, Minnesota, August 2025

This data set contains metadata associated with shrub-layer vegetation samples collected from the Spruce and Peatland Responses Under Changing Environments (SPRUCE) experiment in August 2025. This sample metadata contains no analytical results and is a reference for analytical datasets. To ensure accessibility and discoverability, each sample was assigned an International Generic Sample Number (IGSN), a persistent identifier, using System for Earth and Extraterrestrial Sample Registration (SESAR). These samples were used for downstream analysis by multiple teams of researchers the results of which will be reported separately. This dataset contains one data file in comma separate (.csv) format. Additional metadata are provided: one data dictionary and a file-level metadata file in comma separate (.csv) format and a user guide in PDF (*.pdf) format. An aliquot of most samples is stored in the SPRUCE archive and may be available for further analysis by request. See below under 7 Sample Access. Access this collection event on SESAR https://doi.org/10.58052/IEJ9B069L. To inquire about obtaining archived samples for analysis, reach out using the Contact Sample Owner form located on the bottom of the landing page in SESAR.

Birkebak, Joshua [ORNL] (ORCID:0009000955611494)↗
DOE OSTI2021

Invertebrate and Plant Community Diversity of an Illinois Corn–Soybean Field with Integrated Shrub Willow Bioenergy Buffers

Perennial bioenergy crop production within intensively managed agricultural landscapes has the potential to improve the sustainability, resiliency, and diversity of these landscapes. Perennial crops are ideal because of their high production potential on marginal lands relative to grain crops (e.g., corn and soybean) and their ability to provide additional ecosystem service benefits. When agricultural landscapes are designed to target specific services, determining the non-targeted services of perennial bioenergy crops can further promote their adoption. This 3-year study addresses this proposition by evaluating the canopy invertebrates and understory plant (non-target crop) communities using bee bowls and point measurement of ground coverage, respectively, within a grain field integrated with shrub willow buffer systems designed for nutrient loss reduction. Greater plant diversity and richness were observed under willow than under grain, resembling that of the surrounding riparian community with more perennial, native species. However, the same relationship did not hold true for invertebrates, with seasonality having a significant influence resulting in similar communities observed in willow and grain plots. The presence of unique plant and invertebrate species in both willow and grain crops as well as foraging pollinators on both crop and non-target crop species highlights the importance of habitat heterogeneity for supporting biodiversity and the potential benefits of buffer bioenergy landscape designs.

09 BIOMASS FUELS↗
DOE OSTI2022

Sources and Variability of Nitrate on an Alaskan Hillslope Dominated by Alder Shrubs, Kougarok, Alaska, 2017 and 2018

Data provided include results of analyses of soil pore-water, soil moisture, and leaf litter samples collected at a Kougarok Hillslope site dominated by alder shrubs (KG_MM64) in the Seward Peninsula, Alaska during July and September 2017 and 2018. Samples were from surface soils in close proximity to 5 alder patches, collected upslope, within, and downslope of the alder patches. Pore water was analyzed for a comprehensive set of anions, cations, elemental analyses, and oxygen and nitrogen isotopes. Soil samples were collected for soil moisture determination. Leaf litter extracts were analyzed for carbon and nitrogen content and carbon and nitrogen isotopes. This dataset contains 3 *.csv files and 1 *.pdf file. The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Shrub Seedling Experiment: Environmental Conditions, Vegetation Composition, and Seedling Recruitment, Seward Peninsula, Alaska, 2018-2019

In June 2018, a manipulative seed-addition experiment was established at the Council Mile Marker 71 (CN_MM71), Quartz Creek Burn Area (Kougarok Mile Marker 86), and Quartz Creek Unburned (Kougarok Mile Marker 80) sites on the Seward Peninsula, Alaska. At each site, 5 replicate blocks were established in disturbed and intact upland tussock tundra (a total of 40 plots). Disturbed plots at Council were located on thermo-erosional (thermokarst) slopes, while disturbed plots in Quartz Creek were in burned areas affected by the Mingvk Lake fire in 2015. Using a split-plot design, an additional manual disturbance treatment (scraping to remove the surface bryophyte layer) was implemented across all blocks in June 2018. Seeds of five erect, deciduous shrubs were broadcast seeded into each plot in June 2018, and seedlings were censused in August 2018 and August 2019. The dataset includes ancillary measurements of plot-level environmental conditions (soil temperature, moisture, chemistry, thaw depth, microtopography, substrate thickness) and vegetation composition (NDVI and estimated percent cover by species and plant functional type). Dataset contains 10 csv data files (five data files with corresponding data dictionaries and one file-level metadata file) and one pdf user guide. The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS1985

Preliminary Analysis of AIS Spectral Data Acquired from Semi-arid Shrub Communities in the Owens Valley, California

Spectral characteristics of semic-arid plant communities using 128 channel airborne imaging spectrometer (AIS) data acquired on October 30, 1984. Both field and AIS spectra of vegetation were relatively featureless and differed from substrate spectra primarily in albedo. Unvegetated sand dunes were examined to assess spectral variation resulting from topographic irregularity. Although shrub cover as low as 10% could be detected on relatively flat surfaces, such differences were obscured in more heterogeneous terrain. Sagebrush-covered fans which had been scarred by fire were studied to determine the effect of changes in plant density on reflectance. Despite noise in the atmospherically corrected spectra, these provide better resolution of differences in plant density than spectra which are solar-corrected only. A high negative correlation was found between reflectance and plant cover in areas which had uniform substrates and vegetation types. A lower correlation was found where vegetation and substrates were more diverse.

Ustin, S. L.↗
NASA NTRS1986

Identification of major backscattering sources in trees and shrubs at 10 GHz

A short-range very-fine-resolution FM-CW radar scatterometer has been used to identify the primary contributors to 10-GHz radar backscatter from pine, pin oak, American sycamore and sugar maple trees, and from creeping juniper shrubs. This system provided a range resolution of 11 cm and gave a 16-cm diameter illumination area at the target range of about 4 m. For a pine tree, the needles caused the strongest backscatter as well as the strongest attenuation in the radar signal. Cones, although insignificant contributors to the total backscatter, were more important for backscattering than for attenuation. For the rest of the trees, leaves were the strongest cause of backscattering and attenuation. However, in the absence of leaves, the petioles, small twigs, and branches gave relatively strong backscatter. For American sycamore and sugar maple trees, the fruits did not affect the total backscatter unless they were packed in clusters. For creeping juniper the backscattered energy and attenuation in the radar signal were mainly due to the top two layers of the evergreen scales. The contribution of the tree trunks was not determined.

Zoughi, R.↗
NASA NTRS1986

Analysis of substrate and plant spectral features of semi-arid shrub communities in the Owens Valley, California

Airborne Imaging Spectrometer (AIS) data were analyzed to deduce plant density and species composition in three semi-arid shrub-dominated communities of Owens Valley, CA, occurring on either a sand, granite alluvium, or basalt substrate. The high-spectral resolution AIS data were related to spectra obtained with field portable spectrometers, which in turn were related to plant and soil characteristics of the communities. Many of the dominant species have unique spectral features which permit their identification in AIS pixel images. The canopy-induced shadow may be a major factor influencing substrate spectral properties during fall and winter, because of low sun angles. Moreover, changes in spectral signatures following dormancy and leaf senescence tend to decrease contrasts between the plant community and the geologic substrate, also suggesting that fall and winter are a difficult time of year for spectral analyses.

Ustin, S. L.↗
NASA NTRS1986

AIS spectra of desert shrub canopies

Airborne Imaging Spectrometer (AIS) data were collected 30 August 1985 from a desert shrub community in central Oregon. Spectra from artificial targets placed on the test site and from bare soil, big sagebrush (Artemesia tridentata wyomingensis), silver sagebrush (Artemesia cana bolander), and exposed volcanic rocks were studied. Spectral data from grating position 3 (tree mode) were selected from 25 ground positions for analysis by Principal Factor Analysis (PFA). In this grating position, as many as six factors were identified as significant in contributing to spectral structure. Channels 74 through 84 (tree mode) best characterized between-class differences. Other channels were identified as nondiscriminating and as associated with such errors as excessive atmospheric absorption and grating positin changes. The test site was relatively simple with the two species (A. tridentata and A. cana) representing nearly 95% of biomass and with only two mineral backgrounds, a montmorillonitic soil and volcanic rocks. If, as in this study, six factors of spectral structure can be extracted from a single grating position from data acquired over a simple vegetation community, then AIS data must be considered rich in information-gathering potential.

Murray, R.↗
NASA NTRS1992

The application of a geometric optical canopy reflectance model to semiarid shrub vegetation

Estimates are obtained of the average plant size and density of shrub vegetation on the basis of SPOT High Resolution Visible Multispectral imagery from Chihuahuan desert areas, using the Li and Strahler (1985) model. The aggregated predictions for a number of stands within a class were accurate to within one or two standard errors of the observed average value. Accuracy was highest for those classes of vegetation where the nonrandom scrub pattern was characterized for the class on the basis of the average coefficient of the determination of density.

Franklin, Janet↗
NASA NTRS1994

On the use of radiative surface temperature to estimate sensible heat flux over sparse shrubs in Nevada

The accurate partitioning of available energy into sensible and latent heat flux is crucial to the understanding of surface atmosphere interactions. This issue is more complicated in arid and semi arid regions where the relative contribution to surface fluxes from the soil and vegetation may vary significantly throughout the day and throughout the season. A three component model to estimate sensible heat flux over heterogeneous surfaces is presented. The surface was represented with two adjacent compartments. The first compartment is made up of two components, shrubs and shaded soil, the second of open 'illuminated' soil. Data collected at two different sites in Nevada (U.S.) during the Summers of 1991 and 1992 were used to evaluate model performance. The results show that the present model is sufficiently general to yield satisfactory results for both sites.

Chehbouni, A.↗