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At least 73 records · Page 4

Carbon Storage Technical Viability Approach (CS TVA): An Integrated Approach for Feasibility and Data Resource Assessment

There is currently a poor understanding and lack of workflow to understand the technical viability of carbon storage spatially. To address this gap, the multi-faceted Carbon Storage Technical Viability Approach (CS TVA) is being developed to incorporate CO2 storage resources, environmental and socio-economic justice (EJ/SJ) factors to enable more comprehensive assessments. The CS TVA includes a (1) matrix framework, (2) an integrated and labeled database, (3) a data availability assessment workflow, and (4) spatial data availability assessment results. This approach leverages spatial and data science analytics to communicate data density, uncertainty, and gaps. The workflow can be applied in whole or in part, based on user needs.

Rodriguez, Neyda Cordero↗

Filling in the GAPS: evaluating completeness and coverage of open-access biodiversity databases in the United States

Primary biodiversity data constitute observations of particular species at given points in time and space. Open-access electronic databases provide unprecedented access to these data, but their usefulness in characterizing species distributions and patterns in biodiversity depend on how complete species inventories are at a given survey location and how uniformly distributed survey locations are along dimensions of time, space, and environment. Our aim was to compare completeness and coverage among three open-access databases representing ten taxonomic groups (amphibians, birds, freshwater bivalves, crayfish, freshwater fish, fungi, insects, mammals, plants, and reptiles) in the contiguous United States. We compiled occurrence records from the Global Biodiversity Information Facility (GBIF), the North American Breeding Bird Survey (BBS), and federally administered fish surveys (FFS). In this study, we aggregated occurrence records by 0.1° × 0.1° grid cells and computed three completeness metrics to classify each grid cell as well-surveyed or not. Next, we compared frequency distributions of surveyed grid cells to background environmental conditions in a GIS and performed Kolmogorov–Smirnov tests to quantify coverage through time, along two spatial gradients, and along eight environmental gradients. The three databases contributed >13.6 million reliable occurrence records distributed among >190,000 grid cells. The percent of well-surveyed grid cells was substantially lower for GBIF (5.2%) than for systematic surveys (BBS and FFS; 82.5%). Still, the large number of GBIF occurrence records produced at least 250 well-surveyed grid cells for six of nine taxonomic groups. Coverages of systematic surveys were less biased across spatial and environmental dimensions but were more biased in temporal coverage compared to GBIF data. GBIF coverages also varied among taxonomic groups, consistent with commonly recognized geographic, environmental, and institutional sampling biases. Lastly, this comprehensive assessment of biodiversity data across the contiguous United States provides a prioritization scheme to fill in the gaps by contributing existing occurrence records to the public domain and planning future surveys.

59 BASIC BIOLOGICAL SCIENCES↗

Rapid Automated Annotation and Analysis of N-Glycan Mass Spectrometry Imaging Data Sets Using NGlycDB in METASPACE

Imaging N-glycan spatial distribution in tissues using mass spectrometry imaging (MSI) is emerging as a promising tool in biological and clinical applications. However, there is currently no high throughput tool for visualization and molecular annotation of N-glycans in MSI data, which significantly slows down data processing and hampers the applicability of this approach. In this work, we present how METASPACE, an open-source cloud engine for molecular annotation of MSI data, can be used to automatically annotate, visualize, analyze, and interpret high-resolution mass spectrometry-based spatial N-glycomics data. METASPACE is an emerging tool in spatial metabolomics, but the lack of compatible glycan databases has limited its application for comprehensive N-glycan annotations from MSI datasets. We created NGlycDB, a public database of N-glycans, by adapting available glycan databases. We demonstrate the applicability of NGlycDB in METASPACE by analyzing MALDI-MSI data from formalin-fixed paraffin-embedded (FFPE) human kidney and mouse lung tissue sections. We added NGlycDB to METASPACE for public use, thus facilitating applications of MSI in glycobiology.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

193 nm Ultraviolet Photodissociation for the Characterization of Singly Charged Proteoforms Generated by MALDI

MALDI imaging allows for the near-cellular profiling of proteoforms directly from microbial, plant, and mammalian samples. Despite detecting hundreds of proteoforms, identification of unknowns with only intact mass information remains a distinct challenge, even with high mass resolving power and mass accuracy. To this end, many supplementary methods have been used to create experimental databases for accurate mass matching, including bulk or spatially resolved bottom-up and/or top-down proteomics. Herein, we describe the application of 193 nm ultraviolet photodissociation (UVPD) for fragmentation of quadrupole isolated singly charged ubiquitin (m/z 8565) by MALDI-UVPD on a UHMR HF Orbitrap. This platform permitted the high-resolution accurate mass measurement of not just terminal fragments but also large internal fragments. Finally, the outlined workflow demonstrates the feasibility of top-down analyses of isolated MALDI protein ions and the potential toward more comprehensive characterization of proteoforms in MALDI imaging applications.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Convergence in simulating global soil organic carbon by structurally different models after data assimilation

Abstract Current biogeochemical models produce carbon–climate feedback projections with large uncertainties, often attributed to their structural differences when simulating soil organic carbon (SOC) dynamics worldwide. However, choices of model parameter values that quantify the strength and represent properties of different soil carbon cycle processes could also contribute to model simulation uncertainties. Here, we demonstrate the critical role of using common observational data in reducing model uncertainty in estimates of global SOC storage. Two structurally different models featuring distinctive carbon pools, decomposition kinetics, and carbon transfer pathways simulate opposite global SOC distributions with their customary parameter values yet converge to similar results after being informed by the same global SOC database using a data assimilation approach. The converged spatial SOC simulations result from similar simulations in key model components such as carbon transfer efficiency, baseline decomposition rate, and environmental effects on carbon fluxes by these two models after data assimilation. Moreover, data assimilation results suggest equally effective simulations of SOC using models following either first‐order or Michaelis–Menten kinetics at the global scale. Nevertheless, a wider range of data with high‐quality control and assurance are needed to further constrain SOC dynamics simulations and reduce unconstrained parameters. New sets of data, such as microbial genomics‐function relationships, may also suggest novel structures to account for in future model development. Overall, our results highlight the importance of observational data in informing model development and constraining model predictions.

54 ENVIRONMENTAL SCIENCES↗

Data-Model Needs for Belowground Ecology. A Summary Report from the Terrestrial Ecosystem Science (TES) Mini-Workshop, May 8, 2014

Terrestrial life on Earth depends on belowground cycling and storage of a significant portion of the planet’s biologically-active carbon. The interplay among organic inputs by primary producers, soil organic matter stabilization, and assimilation and mineralization by soil organisms drives belowground ecology. Understanding belowground carbon dynamics, including the stability and vulnerability of soil organic carbon stocks, is necessary to project the responses and feedbacks of terrestrial ecosystems to a changing climate. Although conceptually understood, belowground hydrobiogeochemical systems are not well characterized with quantitative and mechanistic representations of critical functions. As a result, these systems are inadequately represented in modeling efforts, limiting our ability to understand and project terrestrial carbon source/sink relationships at various temporal and spatial scales. The belowground science community lacks robust databases and data libraries against which model sensitivities and performance can be tested and enhanced. Improved understanding of belowground ecosystems, including biotic and abiotic interactions, is needed to ensure that model structures include and provide adequate representations of critical belowground processes, functions, and dynamics. A one-day workshop brought together experimental and modeling representatives from the four Department of Energy (DOE) National Laboratories where the Office of Biological and Environmental Research (BER) Terrestrial Ecosystem Science (TES) program has investments in belowground ecology. The group focused on identifying and characterizing (1) critical experimental and observational datasets for testing and developing existing and future belowground-process models and land models; (2) the limitations and needs for modeling belowground processes within ecosystem models; and (3) key areas for leveraging current research activities across the National Laboratories and BER-funded projects. Discussion results are organized in this report as: (I) over-arching data requirements for advancing understanding of belowground ecosystems; (II) efforts that could rapidly improve understanding and model representations of belowground components of terrestrial ecosystems; and (III) longer-term research needs that would benefit from greater and more sustained support.

54 ENVIRONMENTAL SCIENCES↗

Parametrization of textural patterns in {sup 123}I-ioflupane imaging for the automatic detection of Parkinsonism

Purpose: A novel approach to a computer aided diagnosis system for the Parkinson's disease is proposed. This tool is intended as a supporting tool for physicians, based on fully automated methods that lead to the classification of{sup 123}I-ioflupane SPECT images. Methods: {sup 123}I-ioflupane images from three different databases are used to train the system. The images are intensity and spatially normalized, then subimages are extracted and a 3D gray-level co-occurrence matrix is computed over these subimages, allowing the characterization of the texture using Haralick texture features. Finally, different discrimination estimation methods are used to select a feature vector that can be used to train and test the classifier. Results: Using the leave-one-out cross-validation technique over these three databases, the system achieves results up to a 97.4% of accuracy, and 99.1% of sensitivity, with positive likelihood ratios over 27. Conclusions: The system presents a robust feature extraction method that helps physicians in the diagnosis task by providing objective, operator-independent textural information about{sup 123}I-ioflupane images, commonly used in the diagnosis of the Parkinson's disease. Textural features computation has been optimized by using a subimage selection algorithm, and the discrimination estimation methods used here makes the system feature-independent, allowing us to extend it to other databases and diseases.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Interannual and intra-annual variability of rainfall in Haiti (1905–2005)

The interannual variability of annual and monthly rainfall in Haiti is examined from a database of 78 rain gauges in 1905–2005. The spatial coherence of annual rainfall is rather low, which is partly due to Haiti’s rugged landscape, complex shoreline, and surrounding warm waters (mean sea surface temperatures >27 °C from May to December). The interannual variation of monthly rainfall is mostly shaped by the intensity of the low-level winds across the Caribbean Sea, leading to a drier- (or wetter-) than-average rainy season associated with easterly (or westerly) anomalies, increasing (or decreasing) winds. The varying speed of low-level easterlies across the Caribbean basin may reflect at least four different processes during the year: (1) an anomalous trough/ridge over the western edge of the Azores high from December to February, peaking in January; (2) a zonal pressure gradient between Eastern Pacific and the tropical Northern Atlantic from May/June to September, with a peak in August (i.e. lower-than-average rainfall in Haiti is associated with positive sea level pressure anomalies over the tropical North Atlantic and negative sea level pressure anomalies over the Eastern Pacific); (3) a local ocean–atmosphere coupling between the speed of the Caribbean Low Level Jet and the meridional sea surface temperature (SST) gradient across the Caribbean basin (i.e. colder-than-average SST in the southern Caribbean sea is associated with increased easterlies and below-average rainfall in Haiti). This coupling is triggered when the warmest Caribbean waters move northward toward the Gulf of Mexico; (4) in October/November, a drier- (or wetter-) than-usual rainy season is related to an almost closed anticyclonic (or cyclonic) anomaly located ENE of Haiti on the SW edge of the Azores high. This suggests a main control of the interannual variations of rainfall by intensity, track and/or recurrence of tropical depressions traveling northeast of Haiti. In conclusion, during this period, the teleconnection of Haitian rainfall with synchronous Atlantic and Eastern Pacific SST is at a minimum.

54 ENVIRONMENTAL SCIENCES↗

HiRes deconvolved Spitzer images of 89 protostellar jets and outflows: New data on the evolution of the outflow morphology

To study the role of protosellar jets and outflows in the time evolution of the parent cores and the protostars, the astronomical community needs a large enough database of infrared images of protostars at the highest spatial resolution possible to reveal the details of their morphology. Spitzer provides unprecedented sensitivity in the infrared to study both the jet and outflow features, however, its spatial resolution is limited by its 0.85 m mirror. Here, we use a high-resolution deconvolution algorithm, 'HiRes,' to improve the visualization of spatial morphology by enhancing resolution (to subarcsecond levels in the IRAC bands) and removing the contaminating side lobes from bright sources in a sample of 89 protostellar objects. These reprocessed images are useful for detecting (1) wide-angle outflows seen in scattered light, (2) morphological details of H{sub 2} emission in jets and bow shocks, and (3) compact features in MIPS 24 μm images as protostar/disk and atomic/ionic line emission associated with the jets. The HiRes FITS image data of such a large homogeneous sample presented here will be useful to the community in studying these protostellar objects. To illustrate the utility of this HiRes sample, we show how the opening angle of the wide-angle outflows in 31 sources, all observed in the HiRes-processed Spitzer images, correlates with age. Our data suggest a power-law fit to opening angle versus age with an exponent of ∼0.32 and 0.02, respectively, for ages ≤8000 yr and ≥8000 yr.

79 ASTRONOMY AND ASTROPHYSICS↗

Bag of Lines (BoL) for Improved Aerial Scene Representation

Feature representation is a key step in automated visual content interpretation. In this letter, we present a robust feature representation technique, referred to as bag of lines (BoL), for high-resolution aerial scenes. The proposed technique involves extracting and compactly representing low-level line primitives from the scene. The compact scene representation is generated by counting the different types of lines representing various linear structures in the scene. Through extensive experiments, we show that the proposed scene representation is invariant to scale changes and scene conditions and can discriminate urban scene categories accurately. We compare the BoL representation with the popular scale invariant feature transform (SIFT) and Gabor wavelets for their classification and clustering performance on an aerial scene database consisting of images acquired by sensors with different spatial resolutions. The proposed BoL representation outperforms the SIFT- and Gabor-based representations.

97 MATHEMATICS AND COMPUTING↗

DIATOM (Data Initialization and Modification) Library Version 7.0

DIATOM is a library that provides numerical simulation software with a computational geometry front end that can be used to build up complex problem geometries from collections of simpler shapes. The library provides a parser which allows for application-independent geometry descriptions to be embedded in simulation software input decks. Descriptions take the form of collections of primitive shapes and/or CAD input files and material properties that can be used to describe complex spatial and temporal distributions of numerical quantities (often called “database variables” or “fields”) to help define starting conditions for numerical simulations. The capability is designed to be general purpose, robust and computationally efficient. By using a combination of computational geometry and recursive divide-and-conquer approximation techniques, a wide range of primitive shapes are supported to arbitrary degrees of fidelity, controllable through user input and limited only by machine resources. Through the use of call-back functions, numerical simulation software can request the value of a field at any time or location in the problem domain. Typically, this is used only for defining initial conditions, but the capability is not limited to just that use. The most recent version of DIATOM provides the ability to import the solution field from one numerical solution as input for another.

Crawford, David A.↗

Machine-Learning-Based Mapping and Modeling of Solar Energy with Ultra-High Spatiotemporal Granularity

Despite the rapid growth of solar energy, we still lack a dynamic, high-fidelity database that tracks the spatiotemporal variations of solar PVs and their associated infrastructures across different places at a spatially resolved scale. The absence of such data presents a barrier to various applications such as solar PV growth projection, solar energy integration, solar incentive design, and climate risk assessment. In this project, we aim to bridge this gap by developing AI-based algorithms to extract granular information about solar PV installations and their associated infrastructures (i.e., distribution grids) from widely available unstructured data like remote sensing images and street views. As a result, we have built the Solar Energy Atlas, a fine-grained, large-scale geospatial overlay of distributed solar PVs and distribution grids. On top of it, we have advanced the understanding of solar adoption and distribution grid vulnerability to climate-induced extremes. Our major contributions can be summarized as follow: (1) By developing new AI algorithms, we have built the most comprehensive solar PV spatiotemporal database covering the entire US. This is the first time we obtained the exact GPS locations, size, subtype, and installation year information for rooftop solar PVs across the US. This database can be used for solar PV growth projection, solar energy integration, solar energy policy analysis and design, and spatially-resolved climate risk assessment. (2) Leveraging this database, we have uncovered the socioeconomic driving factors that are correlated with earlier onset of solar adoption and higher saturated adoption levels. We have identified the heterogeneity in the effects of different types of financial incentives on solar adoption and provided implications for tailoring incentive design based on local income levels to promote equitable solar adoption. (3) We have developed a distribution grid GIS mapping algorithm which can obtain granular geospatial and topology information about distribution grids using multi-modal open data, reducing the dependency on hard-to-obtain smart meter data of conventional approaches. It shows effectiveness in both the U.S. and Sub-Saharan Africa. Using this algorithm, we have uncovered the non-uniform vulnerability of distribution grids to wildfires in California in the aspects of undergrounding protection and Distributed Energy Resources (DER) preparedness. This has provided important implications for improving the affordability and equity of grid adaptation approaches. (3) We have made our produced database publicly available and provided user-friendly interface to enable various stakeholders and the general public to interact with the data. We have also integrated the produced data into the Data Commons platform to enable the public to access the data and correlate it with other location-specific characteristics simply using natural language as queries. The impact of our project is three-fold: (1) New algorithms for mapping solar PVs and distribution grids across space and time, which are open source to facilitate researchers and industry; (2) New databases of solar PVs and distribution grids that have been made publicly available for engineering, social, and policy applications; (3) New understandings and actionable insights on the potential approaches to promoting solar adoption and reducing energy infrastructure vulnerabilities. In this report, we start by discussing the project background and motivation (section 5), followed by the overview of project objectives (section 6). Results and discussion for each task are presented in section 7. Significant accomplishments are summarized in section 8. This report will be concluded by discussing the paths forwards (section 9), products (section 10), and team roles (section 11).

14 SOLAR ENERGY↗

Climatic controls of decomposition drive the global biogeography of forest-tree symbioses

The identity of the dominant microbial symbionts in a forest determines the ability of trees to access limiting nutrients from atmospheric or soil pools, sequester carbon and withstand the impacts of climate change. Characterizing the global distribution of symbioses, and identifying the factors that control it, are thus integral to understanding present and future forest ecosystem functioning. In this work we generate the first spatially explicit global map of forest symbiotic status using a database of over 1.1 million forest inventory plots with over 28,000 tree species. Our analyses indicate that climatic variables, and in particular climatically-controlled variation in decomposition rate, are the primary drivers of the global distribution of major symbioses. We estimate that ectomycorrhizal (EM) trees, which represent only 2% of all plant species, constitute approximately 60% of tree stems on Earth. EM symbiosis dominates forests where seasonally cold and dry climates inhibit decomposition, and are the predominant symbiosis at high latitudes and elevation. On the other hand, arbuscular mycorrhizal (AM) trees dominate aseasonally warm tropical forests and occur with EM trees in temperate biomes where seasonally warm-and-wet climates enhance decomposition. Continental transitions between AM and EM dominated forests occur relatively abruptly along climate driven decomposition gradients, which is likely caused by positive plant-microbe feedbacks. Symbiotic N-fixers, which are insensitive to climatic controls on decomposition compared with mycorrhizal fungi, are most abundant in arid biomes with alkaline soils and high maximum temperatures. The climatically driven global symbiosis gradient we document represents the first spatially-explicit, quantitative understanding of microbial symbioses at the global scale and demonstrates the critical role of microbial mutualisms in shaping the distribution of plant species.

59 BASIC BIOLOGICAL SCIENCES↗

Geographic Information System Tools for Management of US DOE Sites - 13489

The DOE Office of Legacy Management (LM) uses a variety of GIS tools to support long-term surveillance and maintenance (LTS and M) activities at DOE closure sites. These geo-spatial applications provide access to data both for external public viewing and for internal analysis and decision making. LM uses a custom geo-spatial application called geo-spatial Environmental Mapping System (GEMS) that draws validated information from a database of 4.6 million analytical results and 232,000 water level measurements for 58 LTS and M sites. These data were collected from transferred sites over a period of 40 years. The database is used to capture and store historical environmental information such as analytical chemistry data, groundwater depths and elevations, well logs, well construction data, geo-referenced boundaries, site physical features, and sampling locations from LTS and M sites. Stakeholders, regulators, and project personnel can use this Web-based application and data to display information in several forms, such as a tabular report, a graph, and a geo-spatial display, or the data can be labeled or highlighted in a map view. Institutional controls, with their LTS and M requirements and documentation, have recently been incorporated into a prototype GEMS Web page for the Weldon Spring, Missouri, Site. LM uses multiple internal GIS viewers to help ensure the future protection of human health and the environment. For example, at the Rocky Flats, Colorado, Site, LM uses a GIS application to display real property interests on authoritative maps. Another project is used to facilitate discussions at stakeholder meetings for the Rocky Flats site's Original Landfill. The Uranium Leasing Program uses multiple interactive maps that assist in ongoing monitoring and the oversight of lease-holders' activities. (authors)

54 ENVIRONMENTAL SCIENCES↗

Global reconstructed daily surge levels from the 20th Century Reanalysis (1871–2010)

Studying the effect of global patterns of wind and pressure gradients on the sea level variation (storm surge) is a key issue in understanding the recent climate change effect on the dynamical state of the ocean. The analysis of the spatial and temporal variability of storm surges from observations is a difficult task to accomplish since observations are not homogeneous in time, scarce in space, and moreover, their temporal coverage is limited. A recent global surge database developed by AVISO (DAC, Dynamic Atmospheric Correction) fulfilled the lack of data in terms of spatial coverage, but not regarding time extent, since it only includes the last two decades (1992–2014). In this work, we use the 20th Century Reanalysis V2 (20CR), which spans the years 1871 to 2010, to statistically reconstruct daily maximum surge levels at a global scale. A multivariate linear regression model is fitted between daily mean ERA-interim sea level pressure fields and daily maximum surge levels from DAC. Following, the statistical model is used to reconstruct daily surges using mean sea level pressure fields from 20CR. The verification of the statistical model shows good agreements between DAC levels and the reconstructed surge levels from the 20CR. The validation of the reconstructed surge with tide gauges, distributed throughout the domain, shows good accuracy both in terms of high correlations and small errors. A time series comparison is also depicted at specific tide gauges for the beginning of the 20th century, showing a high concordance. Therefore, this work provides to the scientific community, a daily database of maximum surge levels; which correspond to an extension of the DAC database, from 1871 to 2010. This database can be used to improve the knowledge on historical storm surge conditions, allowing the study of their temporal and spatial variability.

Geology↗

Filling Terrorism Gaps: VEOs, Evaluating Databases, and Applying Risk Terrain Modeling to Terrorism

This paper aims to address three issues: the lack of literature differentiating terrorism and violent extremist organizations (VEOs), terrorism incident databases, and the applicability of Risk Terrain Modeling (RTM) to terrorism. Current open source literature and publicly available government sources do not differentiate between terrorism and VEOs; furthermore, they fail to define them. Addressing the lack of a comprehensive comparison of existing terrorism data sources, a matrix comparing a dozen terrorism databases is constructed, providing insight toward the array of data available. RTM, a method for spatial risk analysis at a micro level, has some applicability to terrorism research, particularly for studies looking at risk indicators of terrorism. Leveraging attack data from multiple databases, combined with RTM, offers one avenue for closing existing research gaps in terrorism literature.

99 GENERAL AND MISCELLANEOUS↗

Intercomparison of open-path trace gas measurements with two dual-frequency-comb spectrometers

Abstract. We present the first quantitative intercomparison between two open-path dual-comb spectroscopy (DCS) instruments which were operated across adjacent 2 km open-air paths over a 2-week period. We used DCS to measure the atmospheric absorption spectrum in the near infrared from 6023 to 6376 cm−1 (1568 to 1660 nm), corresponding to a 355 cm−1 bandwidth, at 0.0067 cm−1 sample spacing. The measured absorption spectra agree with each other to within 5 × 10−4 in absorbance without any external calibration of either instrument. The absorption spectra are fit to retrieve path-integrated concentrations for carbon dioxide (CO2), methane (CH4), water (H2O), and deuterated water (HDO). The retrieved dry mole fractions agree to 0.14 % (0.57 ppm) for CO2, 0.35 % (7 ppb) for CH4, and 0.40 % (36 ppm) for H2O at ∼ 30 s integration time over the 2-week measurement campaign, which included 24 °C outdoor temperature variations and periods of strong atmospheric turbulence. This agreement is at least an order of magnitude better than conventional active-source open-path instrument intercomparisons and is particularly relevant to future regional flux measurements as it allows accurate comparisons of open-path DCS data across locations and time. We additionally compare the open-path DCS retrievals to a World Meteorological Organization (WMO)-calibrated cavity ring-down point sensor located along the path with good agreement. Short-term and long-term differences between the open-path DCS and point sensor are attributed, respectively, to spatial sampling discrepancies and to inaccuracies in the current spectral database used to fit the DCS data. Finally, the 2-week measurement campaign yields diurnal cycles of CO2 and CH4 that are consistent with the presence of local sources of CO2 and absence of local sources of CH4.

Waxman, Eleanor M.↗