State Space Reconstruction from Partial Observables in Structural Dynamic Systems for Data-Driven Methods.
Abstract not provided.
Najera-Flores, David↗
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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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Significantly Improved Cyclability of Conversion-Type Transition Metal Oxyfluoride Cathodes by Homologous Passivation Layer Reconstruction
Electrode stabilization by surface passivation has been explored as the most crucial step to develop long-cycle lithium-ion batteries (LIBs). In this work, functionally graded materials consisting of “conversion-type” iron-doped nickel oxyfluoride (NiFeOF) cathode covered with a homologous passivation layer (HPL) are rationally designed for long-cycle LIBs. The compact and fluorine-rich HPL plays dual roles in suppressing the volume change of NiFeOF porous cathode and minimizing the dissolution of transition metals during LIBs cycling by forming a structure/composition gradient. The structure and composition of HPL reconstructs during lithiation/delithiation, buffering the volume change and trapping the dissolved transition metals. As a result, a high capacity of 175 mAh g -1 (equal to an outstanding volumetric capacity of 936 Ah L -1 ) with a greatly reduced capacity decay rate of 0.012% per cycle for 1000 cycles is achieved, which is superior to the NiFeOF porous film without HPL and commercially available NiF 2 -FeF 3 powders. Finally, the proposed chemical and structure reconstruction mechanism of HPL opens a new avenue for the novel materials development for long-cycle LIBs.
25 ENERGY STORAGE↗
LoTToR: An Algorithm for Missing-Wedge Correction of the Low-Tilt Tomographic 3D Reconstruction of a Single-Molecule Structure
A single-molecule three-dimensional (3D) structure is essential for understanding the thermal vibrations and dynamics as well as the conformational changes during the chemical reaction of macromolecules. Individual-particle electron tomography (IPET) is an approach for obtaining a snap-shot 3D structure of an individual macromolecule particle by aligning the tilt series of electron tomographic (ET) images of a targeted particle through a focused iterative 3D reconstruction method. The method can reduce the influence on the 3D reconstruction from large-scale image distortion and deformation. Due to the mechanical tilt limitation, 3D reconstruction often contains missing-wedge artifacts, presented as elongation and an anisotropic resolution. Here, we report a post-processing method to correct the missing-wedge artifact. This low-tilt tomographic reconstruction (LoTToR) method contains a model-free iteration process under a set of constraints in real and reciprocal spaces. A proof of concept is conducted by using the LoTToR on a phantom, i.e., a simulated 3D reconstruction from a low-tilt series of images, including that within a tilt range of ±15°. The method is validated by using both negative-staining (NS) and cryo-electron tomography (cryo-ET) experimental data. A significantly reduced missing-wedge artifact verifies the capability of LoTToR, suggesting a new tool to support the future study of macromolecular dynamics, fluctuation and chemical activity from the viewpoint of single-molecule 3D structure determination.
97 MATHEMATICS AND COMPUTING↗
Capturing thin structures in VOF simulations with two-plane reconstruction
A novel interface reconstruction strategy for volume of fluid (VOF) methods is introduced that represents the liquid-gas interface as two planes that co-exist within a single computational cell. In comparison to the piecewise linear interface calculation (PLIC), this new algorithm greatly improves the accuracy of the reconstruction, in particular when dealing with thin structures such as films. The placement of the two planes requires the solution of a non-linear optimization problem in six dimensions, which has the potential to be overly expensive. Further, an efficient solution to this optimization problem is presented here that exploits two key ideas: an algorithm for extracting multiple plane orientations from transported surface data, and an efficient and mass-conserving distance-finding algorithm that accounts for two planes with arbitrary orientation. Additionally, a simple and robust strategy is presented to accurately represent the surface tension forces produced at the interface of subgrid-thickness films. The performance of this new VOF reconstruction is demonstrated on several test cases that illustrate the capability to handle arbitrarily thin films.
71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
Eulerian and Lagrangian second-order statistics of superfluid 4 He grid turbulence
Here, we use particle-tracking velocimetry to study Eulerian and Lagrangian second-order statistics of superfluid 4 He grid turbulence. The Eulerian energy spectra at scales larger than the mean distance between quantum vortex lines behave classically with close to Kolmogorov-1941 scaling and are almost isotropic. The Lagrangian second-order structure functions and frequency power spectra, measured at scales comparable with the intervortex distance, demonstrate a sharp transition from nearly classical behavior to a regime dominated by the motion of quantum vortex lines. Employing the homogeneity of the flow, we verify a set of relations that connect various second-order statistical objects that stress different aspects of turbulent behavior, allowing a multifaceted analysis. We use the two-way bridge relations between Eulerian energy spectra and second-order structure functions to reconstruct the energy spectrum from the known second-order velocity structure function and vice versa. The Lagrangian frequency spectrum reconstructed from the measured Eulerian spectrum using the Eulerian-Lagrangian bridge differs from the measured Lagrangian spectrum in the quasiclassical range, which calls for further investigation.
75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
Reconstructing cosmological initial conditions from late-time structure with convolutional neural networks
ABSTRACT We present a method to reconstruct the initial linear-regime matter density field from the late-time non-linearly evolved density field in which we channel the output of standard first-order reconstruction to a convolutional neural network (CNN). Our method shows dramatic improvement over the reconstruction of either component alone. We show why CNNs are not well-suited for reconstructing the initial density directly from the late-time density: CNNs are local models, but the relationship between initial and late-time density is not local. Our method leverages standard reconstruction as a preprocessing step, which inverts bulk gravitational flows sourced over very large scales, transforming the residual reconstruction problem from long-range to local and making it ideally suited for a CNN. We develop additional techniques to account for redshift distortions, which warp the density fields measured by galaxy surveys. Our method improves the range of scales of high-fidelity reconstruction by a factor of 2 in wavenumber above standard reconstruction, corresponding to a factor of 8 increase in the number of well-reconstructed modes. In addition, our method almost completely eliminates the anisotropy caused by redshift distortions. As galaxy surveys continue to map the Universe in increasingly greater detail, our results demonstrate the opportunity offered by CNNs to untangle the non-linear clustering at intermediate scales more accurately than ever before.
Astronomy & Astrophysics↗
TomoGAN: low-dose synchrotron x-ray tomography with generative adversarial networks: discussion
Synchrotron-based x-ray tomography is a noninvasive imaging technique that allows for reconstructing the internal structure of materials at high spatial resolutions from tens of micrometers to a few nanometers. In order to resolve sample features at smaller length scales, however, a higher radiation dose is required. Therefore, the limitation on the achievable resolution is set primarily by noise at these length scales. We present TomoGAN, a denoising technique based on generative adversarial networks, for improving the quality of reconstructed images for low-dose imaging conditions. We evaluate our approach in two photon-budget-limited experimental conditions: (1) sufficient number of low-dose projections (based on Nyquist sampling), and (2) insufficient or limited number of high-dose projections. In both cases, the angular sampling is assumed to be isotropic, and the photon budget throughout the experiment is fixed based on the maximum allowable radiation dose on the sample. Evaluation with both simulated and experimental datasets shows that our approach can significantly reduce noise in reconstructed images, improving the structural similarity score of simulation and experimental data from 0.18 to 0.9 and from 0.18 to 0.41, respectively. Furthermore, the quality of the reconstructed images with filtered back projection followed by our denoising approach exceeds that of reconstructions with the simultaneous iterative reconstruction technique, showing the computational superiority of our approach.
42 ENGINEERING↗
Thermal tomography 3D imaging of additively manufactured metallic structures
Thermal tomography is a computational method for heat diffusion-based imaging of solids, which provides 3D visualization of data from flash thermography measurements. We investigate thermal tomography imaging and nondestructive evaluation of stainless steel and nickel super alloy metallic structures produced with the laser powder bed fusion (LPBF) additive manufacturing (AM) process. Metallic structures produced with LPBF contain defects, and there are limited capabilities to evaluate these structures non-destructively. Thermal tomography reconstruction of 3D apparent spatial effusivity provides information about AM structure geometry and internal material flaws. We study performance of thermal tomography in imaging of metallic structures through COMSOL computer simulations of transient heat transfer and through reconstruction of data obtained from experimental measurements. Thermal tomography reconstructions of structure shape and dimensions are shown for the Inconel 718 AM structure which has variations in the horizontal plane but is uniform along the depth dimension. Reconstruction of internal defects is investigated using a stainless steel 316L specimen with flat bottom hole (FBH) indentations, and the Inconel 718 plate is produced with the LPBF method, which contains imprinted hemispherical shape low density regions containing non-sintered metallic powder. The FBHs have the same sizes as the imprinted defects in the LPBF specimens but offer better imaging contrast. Thermal tomography reconstructions provide visualizations of internal defects and allow for estimation of their sizes and locations. Results of this study demonstrate that thermal tomography can be used for visualization and quality control in AM.
36 MATERIALS SCIENCE↗
Pair-Variational Autoencoders for Linking and Cross-Reconstruction of Characterization Data from Complementary Structural Characterization Techniques
Not Available
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Dynamic compressed sensing for real-time tomographic reconstruction
Electron tomography has achieved higher resolution and quality at reduced doses with recent advances in compressed sensing. Compressed sensing (CS) exploits the inherent sparse signal structure to efficiently reconstruct three-dimensional (3D) volumes at the nanoscale from undersampled measurements. However, the process bottlenecks 3D reconstruction with computation times that run from hours to days. Here we demonstrate a framework for dynamic compressed sensing that produces a 3D specimen structure that updates in real-time as new specimen projections are collected. Researchers can begin interpreting 3D specimens as data is collected to facilitate high-throughput and interactive analysis. Using scanning transmission electron microscopy (STEM), we show that dynamic compressed sensing accelerates the convergence speed by ~3-fold while also reducing its error by 27% for a Au/SrTiO 3 nanoparticle specimen. Before a tomography experiment is completed, the 3D tomogram has interpretable structure within ~33% of completion and fine details are visible as early as ~66%. Upon completion of an experiment, a high-fidelity 3D visualization is produced without further delay. Additionally, we report reconstruction parameters that tune data fidelity can be manipulated throughout the computation without re-running the entire process.
47 OTHER INSTRUMENTATION↗
CMB-S4: Iterative Internal Delensing and r Constraints
Abstract The tightest constraints on the tensor-to-scalar ratio r can only be obtained after removing a substantial fraction of the lensing B -mode sample variance. The planned Cosmic Microwave Background (CMB)-S4 experiment ( cmb-s4.org ) will remove the lensing B -mode signal internally by reconstructing the gravitational lenses from high-resolution observations. We document here a first lensing reconstruction pipeline able to achieve this optimally for arbitrary sky coverage. We make it part of a map-based framework to test CMB-S4 delensing performance and its constraining power on r , including inhomogeneous noise and two non-Gaussian Galactic polarized foreground models. The framework performs component separation of the high-resolution maps, followed by the construction of lensing B -mode templates, which are then included in a parametric small-aperture map cross-spectra-based likelihood for r . We find that the lensing reconstruction and framework achieve the expected performance, compatible with the target σ ( r ) ≃ 5 · 10 −4 in the absence of a tensor signal, after an effective removal of 92%–93% of the lensing B -mode variance, depending on the simulation set. The code for the lensing reconstruction can also be used for cross-correlation studies with large-scale structures, lensing spectrum reconstruction, cluster lensing, or other CMB lensing-related purposes. As part of our tests, we also demonstrate the joint optimal reconstruction of the lensing potential with the lensing curl potential mode at second order in the density fluctuations.
Astronomy & Astrophysics↗
Characterizing crystalline defects in single nanoparticles from angular correlations of single-shot diffracted X-rays
Characterizing and controlling the uniformity of nanoparticles is crucial for their application in science and technology because crystalline defects in the nanoparticles strongly affect their unique properties. Recently, ultra-short and ultra-bright X-ray pulses provided by X-ray free-electron lasers (XFELs) opened up the possibility of structure determination of nanometre-scale matter with Å spatial resolution. However, it is often difficult to reconstruct the 3D structural information from single-shot X-ray diffraction patterns owing to the random orientation of the particles. This report proposes an analysis approach for characterizing defects in nanoparticles using wide-angle X-ray scattering (WAXS) data from free-flying single nanoparticles. The analysis method is based on the concept of correlated X-ray scattering, in which correlations of scattered X-ray are used to recover detailed structural information. WAXS experiments of xenon nanoparticles, or clusters, were conducted at an XFEL facility in Japan by using the SPring-8 Ångstrom compact free-electron laser (SACLA). Bragg spots in the recorded single-shot X-ray diffraction patterns showed clear angular correlations, which offered significant structural information on the nanoparticles. The experimental angular correlations were reproduced by numerical simulation in which kinematical theory of diffraction was combined with geometric calculations. We also explain the diffuse scattering intensity as being due to the stacking faults in the xenon clusters.
73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
Understanding the Effect of Curvature on the Magnetization Reversal of Three-Dimensional Nanohelices
Comprehending the interaction between geometry and magnetism in three-dimensional (3D) nanostructures is important to understand the fundamental physics of domain wall (DW) formation and pinning. Here, we use focused-electron-beam-induced deposition to fabricate magnetic nanohelices with increasing helical curvature with height. Using electron tomography and Lorentz transmission electron microscopy, we reconstruct the 3D structure and magnetization of the nanohelices. The surface curvature, helical curvature, and torsion of the nanohelices are then quantified from the tomographic reconstructions. Furthermore, by using the experimental 3D reconstructions as inputs for micromagnetic simulations, we can reveal the influence of surface and helical curvature on the magnetic reversal mechanism. Hence, we can directly correlate the magnetic behavior of a 3D nanohelix to its experimental structure. In conclusion, these results demonstrate how the control of geometry in nanohelices can be utilized in the stabilization of DWs and control of the response of the nanostructure to applied magnetic fields.
36 MATERIALS SCIENCE↗
Reconstruction of the BNB and NuMI Neutrino Bunch Structure with ICARUS
ICARUS serves as the Far Detector of the Short Baseline Neutrino (SBN) program at Fermilab, sitting on-axis on the Booster Neutrino Beam (BNB) and 6$^\circ$ off-axis from the Neutrinos at the Main Injector (NuMI) beam. Neutrinos from both beams inherit the timing sub-structure of their parent proton spills, which is in turn derived from either the Booster's or the Main Injector's synchrotron acceleration. Since neutrino propagation introduces only a constant offset, their timing structure is preserved as they travel. Identifying this structure in data represents a powerful tool for selecting neutrino events and searching for physics beyond the Standard Model (BSM). This poster presents the preliminary reconstruction of the BNB and NuMI neutrino bunch structure with ICARUS data, exploiting only the precise timing of ICARUS optical readout system to both locate and assign a time to each interaction.
43 PARTICLE ACCELERATORS↗
Reconstruction of the BNB and NuMI Neutrino Bunch Structure with ICARUS
ICARUS serves as the Far Detector of the Short Baseline Neutrino (SBN) program at Fermilab, sitting on-axis on the Booster Neutrino Beam (BNB) and 6$^\circ$ off-axis from the Neutrinos at the Main Injector (NuMI) beam. Neutrinos from both beams inherit the timing sub-structure of their parent proton spills, which is in turn derived from either the Booster's or the Main Injector's synchrotron acceleration. Since neutrino propagation introduces only a constant offset, their timing structure is preserved as they travel. Identifying this structure in data represents a powerful tool for selecting neutrino events and searching for physics beyond the Standard Model (BSM). This poster presents the preliminary reconstruction of the BNB and NuMI neutrino bunch structure with ICARUS data, exploiting only the precise timing of ICARUS optical readout system to both locate and assign a time to each interaction.
43 PARTICLE ACCELERATORS↗
ODIN: Characterizing the Three-dimensional Structure of Two Protocluster Complexes at z = 3.1
We present a detailed study of the 3D morphology of two extended associations of multiple protoclusters at z = 3.1. These protocluster "complexes," designated COSMOS-z3.1-A and COSMOS-z3.1-C, are the most prominent overdensities of z = 3.1 Lyα emitters (LAEs) identified in the COSMOS field by the One-hundred-deg$^{2}$ DECam Imaging in Narrowbands survey. These protocluster complexes have been followed up with extensive spectroscopy from Keck, Gemini, and DESI. Using a probabilistic method that combines photometrically selected and spectroscopically confirmed LAEs, we reconstruct the 3D structure of these complexes on scales of ≈50 cMpc. We validate our reconstruction method using the IllustrisTNG300-1 cosmological hydrodynamical simulation and show that it consistently outperforms approaches relying solely on spectroscopic data. The resulting 3D maps reveal that both complexes are irregular and elongated along a single axis, emphasizing the impact of sightline on our perception of structure morphology. The complexes consist of multiple density peaks, 10 in COSMOS-z3.1-A and 4 in COSMOS-z3.1-C. The former is confirmed to be a proto-supercluster, similar to Hyperion at z = 2.4 but observed at an even earlier epoch. Multiple "tails" connected to the cores of the density peaks are seen, likely representing cosmic filaments feeding into these extremely overdense regions. The 3D reconstructions further provide strong evidence that Lyα blobs preferentially reside in the outskirts of the highest density regions. Descendant mass estimates of the density peaks suggest that COSMOS-z3.1-A and COSMOS-z3.1-C will evolve to become ultramassive structures by z = 0, with total masses log ( M / M ,⊙ ,) ≳ 15.3 , exceeding that of Coma.
Ramakrishnan, Vandana [Purdue U., West Lafayette] ↗
Toward an event-level analysis of hadron structure using differential programming
Reconstructing the internal properties of hadrons in terms of fundamental quark and gluon de- grees of freedom is a central goal in nuclear and particle physics. This effort lies at the core of major experimental programs, such as the Jefferson Lab 12 GeV program and the upcoming Electron-Ion Collider. A primary challenge is the inherent inverse problem: converting large-scale observational data from collision events into the fundamental QCD-defined densities that characterize the micro- scopic structure of hadronic systems. Recent advances in AI and machine learning have opened new avenues for addressing this challenge using deep learning techniques. A particularly promising direction is the integration of complex theoretical calculations and experimental simulations into a unified framework capable of reconstructing these densities directly from event-level information. In this document, we introduce a key algorithm called LOITS, which enables differentiable program- ming within such a framework, facilitating the use of AI/ML techniques to solve the inverse problem of QCF reconstruction at the event level.
Braga, Kevin [College of William and Mary, William↗
Two datasets are better than one: method of double moments for 3D reconstruction in cryo-EM
Cryo-electron microscopy is a powerful imaging technique for reconstructing three-dimensional molecular structures from noisy tomographic projection images of randomly oriented particles. We introduce a new data fusion framework, termed the method of double moments, which reconstructs molecular structures from two instances of the second-order moment of projection images obtained under distinct orientation distributions: one uniform, the other non-uniform and unknown. We prove that these moments generically uniquely determine the underlying structure, up to a global rotation and reflection, and we develop a convex-relaxation-based algorithm that achieves accurate recovery using only second-order statistics. Our results demonstrate the advantage of collecting and modeling multiple datasets under different experimental conditions, illustrating that leveraging dataset diversity can substantially enhance reconstruction quality in computational imaging tasks.
Kam’s method↗