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Special Issue of Selected Papers from Visualization and Data Analysis 2011

This special issue features the best papers that were selected from the 18th SPIE Conference on Visualization and Data Analysis (VDA 2011). This annual conference is a major international forum for researchers and practitioners interested in data visualization and analytics research, development, and applications. VDA 2011 received 42 high-quality submissions from around the world. Twenty-four papers were selected for full conference papers. The top five papers have been expanded and reviewed for this special issue.

Kao, David L.

VISAGE Visualization for Integrated Satellite, Airborne and Ground-Based Data Exploration

The primary goal of the VISAGE project is to facilitate more efficient Earth Science investigations via a tool that can provide visualization and analytic capabilities for diverse coincident datasets. This proof-of-concept project will be centered around the GPM Ground Validation program, which provides a valuable source of intensive, coincident observations of atmospheric phenomena. The data are from a wide variety of ground-based, airborne and satellite instruments, with a wide diversity in spatial and temporal scales, variables, and formats, which makes these data difficult to use together. VISAGE will focus on "golden cases" where most ground instruments were in operation and multiple research aircraft sampled a significant weather event, ideally while the GPM Core Observatory passed overhead. The resulting tools will support physical process studies as well as satellite and model validation.

Data fusion

EnDEVR: An Environment for Data Engineering in VR

Organizations within the public and private sectors are looking to improve their data science operations for research, development, and operational purposes. As this interest in data science grows, so too does interest in tools and programs that facilitating such operations. This paper presents EnDEVR, the Environment for Data Engineering in Virtual Reality, a user-extensible system that allows for the execution of custom data science functions. We describe the user-centered design process for the EnDEVR system, based on the needs of subject matter experts within the aerospace and aviation industries. Fundamental to this design is a method for users to integrate their existing analysis code (that may leverage third-party vendors) as usable objects in the virtual environment; this allows organizations to operate without the price tag and lifetime obligations associated with commercial data science toolkits, a concept known as “vendor lock-in”. We then present our system design with iterative implementations, and conclude with lessons learned. The presented work may provide insight into future user-centered design processes for VR applications, particularly for digital transformation stakeholders to circumvent vendor lock-in.

Human-centered computing

GeneLab: Current and Future Omics Data Integration Between Space Biology and HRP

For the past five years, the Biological and Physical Sciences Division has pioneered Open Science in Space Biology by funding the NASA GeneLab project. Along with the Ames Life Sciences Data Archive, GeneLab has quickly become the world leader in archiving and scientifically curating spaceflight and spaceflight relevant multi-omics data. Specifically, the GeneLab Data System has become a full enterprise solution providing advanced mining capabilities, several application programming interfaces for data federation and machine learning approaches, and delivering to the world an analytical and visualization platform which has enabled collaboration within the scientific community. Over the past three years, large meta-analysis and modeling studies have been published by the GeneLab Analysis Working Groups (AWGs), which are comprised of ~200 volunteer scientists. One natural extension of GeneLab data reuse has recently turned towards linking animal data with human data, which is the next necessary step to further validate animal models for inferring biological risks to humans conducting LEO, lunar or Martian missions. As such, data from the Human Research Program are an essential component of GeneLab and ALSDA. At the moment, simulated space radiation experiments conducted at Brookhaven National Laboratory make the most of HRP GeneLab data, and the scientific community has been eager to also link their animal spaceflight results to actual Astronaut data and human analog data. We will discuss further the current status of knowledge and future approaches to accelerate our basics understanding of the impact of space stressors on humans using latest omics technology.

omics

Exploring Carbon Mineral Systems: Recent Advances in C Mineral Evolution, Mineral Ecology, and Network Analysis

Large and growing data resources on the spatial and temporal diversity and distribution of the more than 400 carbon-bearing mineral species reveal patterns of mineral evolution and ecology. Recent advances in analytical and visualization techniques leverage these data and are propelling mineralogy from a largely descriptive field into one of prediction within complex, integrated, multidimensional systems. These discoveries include: (1) systematic changes in the character of carbon minerals and their networks of coexisting species through deep time; (2) improved statistical predictions of the number and types of carbon minerals that occur on Earth but are yet to be discovered and described; and (3) a range of proposed and ongoing studies related to the quantification of network structures and trends, relation of mineral “natural kinds” to their genetic environments, prediction of the location of mineral species across the globe, examination of the tectonic drivers of mineralization through deep time, quantification of preservational and sampling bias in the mineralogical record, and characterization of feedback relationships between minerals and geochemical environments with microbial populations. These aspects of Earth’s carbon mineralogy underscore the complex coevolution of the geosphere and biosphere and highlight the possibility for scientific discovery in Earth and planetary systems.

Carbon

Frameworks, Algorithms, and Scalable Technologies for Mathematics (FASTMath) SciDAC Institute

As computational models scale to larger computers, the rate at which they produce data has far outstripped the same computers ability to write that data and further the file systems ability to store that data. Almost all of the SciDAC applications, but especially those related to fusion solve very large scale PDEs whose scientific output his impacted by this problem. To gain access to dynamics in an exascale simulation that are not identifiable a priori and to make that dynamical data available to machine learning requires fundamental research in the area of in situ data data analytics. Here data analytics includes compression, visualization, uncertainty quantification, and machine learning. This in situ data analytics will enable on-the-fly spatial and temporal compression of solution dynamics, expose that space-time compressed field to machine learning algorithms that have been specialized to work with dynamically evolving data (existing machine learning algorithms treat data sets as static), greatly improving the opportunity for machine learning to provide feedback to the compression, all within an ongoing simulation, without the need to write data to files. The same concepts are also being applied to uncertainty quantification and multi-fidelity modeling which have similar needs for spatial and temporal compression of the ongoing exascale simulation to perform either without the typical, unacceptable writing of data to files.

97 MATHEMATICS AND COMPUTING

The Matsu Wheel: A Cloud-Based Framework for Efficient Analysis and Reanalysis of Earth Satellite Imagery

Project Matsu is a collaboration between the Open Commons Consortium and NASA focused on developing open source technology for cloud-based processing of Earth satellite imagery with practical applications to aid in natural disaster detection and relief. Project Matsu has developed an open source cloud-based infrastructure to process, analyze, and reanalyze large collections of hyperspectral satellite image data using OpenStack, Hadoop, MapReduce and related technologies. We describe a framework for efficient analysis of large amounts of data called the Matsu "Wheel." The Matsu Wheel is currently used to process incoming hyperspectral satellite data produced daily by NASA's Earth Observing-1 (EO-1) satellite. The framework allows batches of analytics, scanning for new data, to be applied to data as it flows in. In the Matsu Wheel, the data only need to be accessed and preprocessed once, regardless of the number or types of analytics, which can easily be slotted into the existing framework. The Matsu Wheel system provides a significantly more efficient use of computational resources over alternative methods when the data are large, have high-volume throughput, may require heavy preprocessing, and are typically used for many types of analysis. We also describe our preliminary Wheel analytics, including an anomaly detector for rare spectral signatures or thermal anomalies in hyperspectral data and a land cover classifier that can be used for water and flood detection. Each of these analytics can generate visual reports accessible via the web for the public and interested decision makers. The result products of the analytics are also made accessible through an Open Geospatial Compliant (OGC)-compliant Web Map Service (WMS) for further distribution. The Matsu Wheel allows many shared data services to be performed together to efficiently use resources for processing hyperspectral satellite image data and other, e.g., large environmental datasets that may be analyzed for many purposes.

Analytical comparison of transient and steady state visual evoked cortical potentials

To better describe the linear-dynamic properties of the human visual-cortical response system, transient and steady state Visual Evoked Response Potentials (VERP) were observed. The stimulus presentation device provided both the evoking stimulus (flickering or pulsing lights) and a video task display. The steady state stimulus was modulated by a complex, ten frequency, sum-of-sines, wave. The transient VERP was the time-locked average of the EEG to a series of narrow light pulses (pulse width of 10 msec). The Fourier transform of the averaged pulses had properties that approximate band limited white noise, i.e., a flat spectrum over the frequency region spanned by the 10 summed sines. The Fourier transform of both the steady state and the transient evoked potentials resulted in transfer that are equivalent and therefore comparable. To investigate the effects of task loading on evoked potentials, a grammatical reasoning task was provided. Results support the relevancy of continued application of a systems engineering approach for describing neurosensory functioning.

Junker, A. M.

Bonded composite to metal scarf joint performance in an aircraft landing gear drag strut

The structural performance of a boron-epoxy reinforced titanium drag strut, which contains a bonded scarf joint and was designed to the criteria of the Boeing 747 transport, was evaluated. An experimental and analytical investigation was conducted. The strut was exposed to two lifetimes of spectrum loading and was statically loaded to the tensile and compressive design ultimate loads. Throughout the test program no evidence of any damage in the drag strut was detected by strain gage measurements, ultrasonic inspection, or visual observation. An analytical study of the bonded joint was made using the NASA structural analysis computer program NASTRAN. A comparison of the strains predicted by the NASTRAN computer program with the experimentally determined values shows excellent agreement. The NASTRAN computer program is a viable tool for studying, in detail, the stresses and strains induced in a bonded joint.

Howell, W. E.

A Performance Model of In-Situ Techniques

The computational capacity of High-Performance Computing (HPC) systems increases continuously with the rapid development of central processing units (CPUs) and graphic processing units (GPUs), while the in-/output (IO) subsystem develops relatively slowly and storage capacity is also limited. Data-intensive applications, which are designed to leverage the high computational capacity of HPC resources, typically generate a considerable amount of data for post-processing visualizations and data analytics. The limited IO speed and storage space could lead to constraints in the actual performance of these applications and, therefore, scientific discovery. In-situ techniques, where data is visualized/analysed while still in memory rather than through disk, can contribute to alleviating these problems as they can reduce or even fully avoid data writing/reading through the IO subsystem to/from storage. However, the overall efficiency of insitu techniques crucially depends on the characteristics of both the in-situ tasks and the applications, and the resource distribution among them. Therefore, choosing the right in-situ approach (synchronous, asynchronous, or hybrid) and resource allocation is essential to minimize overhead and maximize the benefits of concurrent execution. In this paper, we present a performance model of in-situ techniques to find the most beneficial in-situ approach and the preferred resource configuration. We verify the high accuracy of our approach with over 6800 measurements and provide use cases with different applications.

Ju, Yi [Max Planck Computing and Data Facility, Ga

Geobotanical discrimination of ultramafic parent materials An evaluation of remote sensing techniques

Color and color infrared aerial photography and imagery acquired from a Daedalus DEI-1260 multispectral airborne scanner were employed in an investigation to discriminate ultramafic rock types in a test site in southwest Oregon. An analysis of the relationships between vegetation characteristics and parent materials was performed using a vegetation classification and map developed for the project, lithologic information derived from published geologic maps of the region, and terrain information gathered in the field. Several analytical methods, including visual image analysis, band ratioing, principal components analysis, and contrast enhancement and subsequent color composite generation were used in the investigation. There was a close correspondence between vegetation types and major rock types. These were readily discriminated by the remote sensing techniques. It was found that ultramafic rock types were separable from non-ultramafic rock types and serpentine was distinguishable from non-serpentinized peridotite. Further investigations involving spectroradiometric and digital classification techniques are being performed to further identify rock types and to discriminate chromium and nickel-bearing rock types.

Mouat, D. A.

Numerical simulations of an oblique detonation wave engine

An account is given of the numerical methods employed in a code for the simulation of supersonic combustion, which is then applied to the simulation of attached detonations and flames associated with the oblique-detonation wave supersonic combustor concept. The addition of heat by a detonation wave results in a shorter combustor than can be obtained in more conventional scramjet designs. Pure oblique detonations have been produced in a stoichiometric, uniformly mixed hydrogen/air stream; the wave rotates upstream with energy release, according to simple analytical arguments. Flow visualization maps for Mach number and temperature are presented.

Cambier, Jean-Luc

Multitemporal and Multiscaled Fractal Analysis of Landsat Satellite Data Using the Image Characterization and Modeling System (ICAMS)

The Image Characterization And Modeling System (ICAMS) is a public domain software package that is designed to provide scientists with innovative spatial analytical tools to visualize, measure, and characterize landscape patterns so that environmental conditions or processes can be assessed and monitored more effectively. In this study ICAMS has been used to evaluate how changes in fractal dimension, as a landscape characterization index, and resolution, are related to differences in Landsat images collected at different dates for the same area. Landsat Thematic Mapper (TM) data obtained in May and August 1993 over a portion of the Great Basin Desert in eastern Nevada were used for analysis. These data represent contrasting periods of peak "green-up" and "dry-down" for the study area. The TM data sets were converted into Normalized Difference Vegetation Index (NDVI) images to expedite analysis of differences in fractal dimension between the two dates. These NDVI images were also resampled to resolutions of 60, 120, 240, 480, and 960 meters from the original 30 meter pixel size, to permit an assessment of how fractal dimension varies with spatial resolution. Tests of fractal dimension for two dates at various pixel resolutions show that the D values in the August image become increasingly more complex as pixel size increases to 480 meters. The D values in the May image show an even more complex relationship to pixel size than that expressed in the August image. Fractal dimension for a difference image computed for the May and August dates increase with pixel size up to a resolution of 120 meters, and then decline with increasing pixel size. This means that the greatest complexity in the difference images occur around a resolution of 120 meters, which is analogous to the operational domain of changes in vegetation and snow cover that constitute differences between the two dates.

Quattrochi, Dale A.

International Space Station Future Correlation Analysis Improvements

Ongoing modal analyses and model correlation are performed on different configurations of the International Space Station (ISS). These analyses utilize on-orbit dynamic measurements collected using four main ISS instrumentation systems: External Wireless Instrumentation System (EWIS), Internal Wireless Instrumentation System (IWIS), Space Acceleration Measurement System (SAMS), and Structural Dynamic Measurement System (SDMS). Remote Sensor Units (RSUs) are network relay stations that acquire flight data from sensors. Measured data is stored in the Remote Sensor Unit (RSU) until it receives a command to download data via RF to the Network Control Unit (NCU). Since each RSU has its own clock, it is necessary to synchronize measurements before analysis. Imprecise synchronization impacts analysis results. A study was performed to evaluate three different synchronization techniques: (i) measurements visually aligned to analytical time-response data using model comparison, (ii) Frequency Domain Decomposition (FDD), and (iii) lag from cross-correlation to align measurements. This paper presents the results of this study.

time synchronization

VISAGE - A Visualization and Exploration Framework for Environmental Data

Diverse airborne and ground-based environmental observations are important technologies for disaster assessment and response, as well as for the validation of environmental satellite observations and atmospheric models which can improve forecasts. The VISAGE (Visualization for Integrated Satellite, Airborne and Ground-based data Exploration) project is working to provide three-dimensional visualization and basic analytics capabilities for such datasets in an interactive user interface. The use of cloud-native, server less technologies for analysis optimized data storage will position VISAGE for integration with other technologies into a Data Analytic Center Framework.

Conover, Helen

Crop-CASMA - A Web GIS Tool for Cropland Soil Moisture Monitoring and Assessment Based on SMAP Data

Timely, frequent, and complete cropland soil moisture information acquired throughout the growing season is critical for agricultural policy, production, food security, and food prices. The NASA Soil Moisture Active and Passive (SMAP) mission provides a reliable data source for cropland soil moisture assessment. This paper presents Crop-CASMA- a web GIS application tool for cropland soil moisture monitoring and assessment based on SMAP data. This interactive Web service-based GIS application tool enables CONUS SMAP derived soil moisture data visualization, dissemination, and analytics. In this paper, we describe the Crop-CASMA application system architecture, the application implementation, and the data it serves. In addition, we also present a few snapshots of the Crop-CASMA data for cropland soil moisture monitoring. The release of Crop-CASMA greatly enhances the user experience and facilitates using soil moisture data products for crop condition monitoring and decision support.

Zhengwei Yang

Crop-CASMA - A Web GIS Tool for Cropland soil moisture Monitoring and Assessment Based on SMAP Data

Timely, frequent, and complete cropland soil moisture information acquired throughout the growing season is critical for agricultural policy, production, food security, and food prices. The NASA Soil Moisture Active and Passive (SMAP) mission provides a reliable data source for cropland soil moisture assessment. This paper presents Crop-CASMA - a web GIS application tool for cropland soil moisture monitoring and assessment based on SMAP data. This interactive Web service-based GIS application tool enables CONUS SMAP derived soil moisture data visualization, dissemination, and analytics. In this paper, we describe the Crop-CASMA application system architecture, the application implementation, and the data it serves. In addition, we also present a few snapshots of the Crop-CASMA data for cropland soil moisture monitoring. The release of Crop-CASMA greatly enhances the user experience and facilitates using soil moisture data products for crop condition monitoring and decision support.

Reichle, Rolf H.