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DOE OSTI2024

Reliability, stability during long-term storage, and intra-individual variation of circulating levels of osteopontin, osteoprotegerin, vascular endothelial growth factor-A, and interleukin-17A

Background: Studies in many populations have reported associations between circulating cytokine levels and various physiological or pathological conditions. However, the reliability of cytokine measurements in population studies, which measure cytokines in multiple assays over a prolonged period, has not been adequately examined; nor has stability during sample storage or intra-individual variation been assessed. Methods: We assessed (1) analytical reliability in short- and long-term repeated measurements; (2) stability and analytical reliability during long-term sample storage, and (3) variability within individuals over seasons, of four cytokines—osteopontin (OPN), osteoprotegerin (OPG), vascular endothelial growth factor-A (VEGF-A), and interleukin-17A (IL-17A). Measurements in plasma or serum samples were made with commercial kits according to standard procedures. Estimation was performed by fitting a random or mixed effects linear model on the log scale. Results: In repeated assays over a short period, OPN, OPG, and VEGF-A had acceptable reliability, with intra- and inter-assay coefficients of variation (CV) less than 0.11. Reliability of IL-17A was poor, with inter- and intra-assay CV 0.85 and 0.43, respectively. During long-term storage, OPG significantly decayed (-33% per year; 95% confidence interval [-54, -3.7]), but not OPN or VEGF-A (-0.3% or -6.3% per year, respectively). Intra- and inter-assay CV over a long period were comparable to that in a short period except for a slight increase in inter-assay CV of VEGF-A. Within-individual variation was small for OPN and VEGF-A, with intra-class correlations (ICC) 0.68 and 0.83, respectively, but large for OPG (ICC 0.11). Conclusions: We conclude that OPN and VEGF-A can be reliably measured in a large population, that IL-17A is suitable only for small experiments, and that OPG should be assessed with caution due to degradation during storage and intra-individual variation. The overall results of our study illustrate the need for validation under relevant conditions when measuring circulating cytokines in population studies.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2025

Hadronic vacuum polarization for the muon 𝑔 − 2 from lattice QCD: Complete short and intermediate windows

We present complete results for the hadronic vacuum polarization (HVP) contribution to the muon anomalous magnetic moment 𝑎 𝜇 in the short- and intermediate-distance window regions, which account for roughly 10% and 35% of the total HVP contribution to 𝑎 𝜇 , respectively. In particular, we perform lattice-QCD calculations for the isospin-symmetric connected and disconnected contributions, as well as corrections due to strong-isospin breaking. For the short-distance window observables, we investigate the so-called log-enhancement effects as well as the significant oscillations associated with staggered quarks in this region. For the dominant, isospin-symmetric light-quark-connected contribution, we obtain 𝑎$^{𝑙⁢𝑙,SD}_{𝜇⁡}$(conn) = 48.139⁢(11) stat ⁢(91) syst ⁢[92] total × 10 −10 and 𝑎$^{𝑙⁢𝑙,W}_{𝜇}$⁡(conn) = 206.90⁢(14) stat ⁢(61) syst ⁢[63] total × 10 −10 . We use Bayesian model averaging to fully estimate the covariance matrix between the individual contributions. Our determinations of the complete window contributions are 𝑎$^{SD}_{𝜇}$ = 69.05⁢(1) stat⁢ (21) syst ⁢[21] total × 10 −10 and 𝑎$^{W}_{𝜇}$ = 236.45⁢(17) stat⁢ (83) syst ⁢[85] total × 10 −10 . This work is part of our ongoing effort to compute all contributions to HVP with an overall uncertainty at the few-permille level.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

NASA NTRS2006

Lab-Scale Study of the Calcium Carbonate Dissolution and Deposition by Marine Cyanobacterium Phormidium subcapitatum

Suggestions that calcification in marine organisms changes in response to global variations in seawater chemistry continue to be advanced (Wilkinson, 1979; Degens et al. 1985; Kazmierczak et al. 1986; R. Riding 1992). However, the effect of [Na+] on calcification in marine cyanobacteria has not been discussed in detail although [Na+] fluctuations reflect both temperature and sea-level fluctuations. The goal of these lab-scale studies therefore was to study the effect of environmental pH and [Na+] on CaCO3 deposition and dissolution by marine cyanobacterium Phormidium subcapitatum. Marine cyanobacterium P. subcapitatum has been cultivated in ASN-III medium. [Ca2+] fluctuations were monitored with Ca(2+) probe. Na(+) concentrations were determined by the initial solution chemistry. It was found that the balance between CaCO3 dissolution and precipitation induced by P. subcapitatum grown in neutral ASN III medium is very close to zero. No CaCO3 precipitation induced by cyanobacterial growth occurred. Growth of P. subcapitatum in alkaline ASN III medium, however, was accompanied by significant oscillations in free Ca(2+) concentration within a Na(+) concentration range of 50-400 mM. Calcium carbonate precipitation occurred during the log phase of P. subcapitatum growth while carbonate dissolution was typical for the stationary phase of P. subcapitatum growth. The highest CaCO3 deposition was observed in the range of Na(+) concentrations between 200-400 mM. Alkaline pH also induced the clamping of P. subcapitatum filaments, which appeared to have a strong affinity to envelop particles of chemically deposited CaCO3 followed by enlargement of those particles size. EDS analysis revealed the presence of Mg-rich carbonate (or magnesium calcite) in the solution containing 10-100 mM Na(+); calcite in the solution containing 200 mM Na(+); and aragonite in the solution containing with 400 mM Na(+). Typical present-day seawater contains xxmM Na(+). Early (Archean) seawater was likely less saline. The division of marine cyanobacterium P. subcapitatum is associated with periodic deposition and dissolution of CaCO3, the rhythms and intensity of which are dependent on concentrations of both OH(-) and Na(+). Thus, the role of present-day marine cyanobacteria in the global carbonate cycle might be reduced to aggregation and recrystallization of available CaCO3 particles in marine water rather than long-term precipitation and accumulation of CaCO3 deposits. For lower Na(+) concentrations, precipitation of carbonates by cyanobacteria would be even less significant. These results suggest that the lack of calcified cyanobacteria in stromatalite-bearing Precambrian sequences can be explained not only by high dissolved inorganic carbon concentrations but also by lower salinity, as well as possible lower pH compared to present-day oceans.

Karakis, S. G.↗

DOE OSTI2025

Hadronic vacuum polarization for the muon g - 2 from lattice QCD: Complete short and intermediate windows

We present complete results for the hadronic vacuum polarization (HVP) contribution to the muon anomalous magnetic moment a μ in the short- and intermediate-distance window regions, which account for roughly 10% and 35% of the total HVP contribution to a μ , respectively. In particular, we perform lattice-QCD calculations for the isospin-symmetric connected and disconnected contributions, as well as corrections due to strong-isospin breaking. For the short-distance window observables, we investigate the so-called log-enhancement effects as well as the significant oscillations associated with staggered quarks in this region. For the dominant, isospin-symmetric light-quark-connected contribution, we obtain a μ l l , SD ( conn ) = 48.139 ( 11 ) stat ( 91 ) syst [ 92 ] total × 10 - 10 and a μ l l , W ( conn ) = 206.90 ( 14 ) stat ( 61 ) syst [ 63 ] total × 10 - 10 . We use Bayesian model averaging to fully estimate the covariance matrix between the individual contributions. Our determinations of the complete window contributions are a μ SD = 69.05 ( 1 ) stat ( 21 ) syst [ 21 ] total × 10 - 10 and a μ W = 236.45 ( 17 ) stat ( 83 ) syst [ 85 ] total × 10 - 10 . This work is part of our ongoing effort to compute all contributions to HVP with an overall uncertainty at the few-permille level.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2025

Upland tidal brackish marsh specific conductivity and salinity measurements, PIE LTER, Plum Island Sound, MA, 2023

This dataset includes raw and corrected specific conductivity, temperature, and calculated salinity measurements collected at 10 cm depth in a Typha angustifolia-dominated tidal brackish wetland at the upper estuary of Plum Island Sound in Newbury, Massachusetts (MA) within the Plum Island Ecosystems Long Term Ecological Research (PIE LTER) site. Measurements were taken to evaluate temporal variation in porewater salinity (a proxy for porewater sulfate concentration) in high frequency to assess soil and plant responses to changes in salinity. Measurements were collected using an Onset HOBO U24-002 Saltwater Conductivity/Salinity data logger deployed in a well. Specific conductivity was corrected using non-linear temperature compensation, and salinity was calculated using the Practical Salinity Scale 1978 via Onset's HOBOware software. Reference conductivity measurements to correct for sensor drift were taken at the start and end of each deployment using a HACH HQ14D Portable Conductivity Meter. Data were then filtered in MATLAB to remove values logged while the sensor was out of the well or during post-deployment equilibration. Detailed metadata, including variable descriptions, sampling methods, QA/QC procedures, and site information, are provided in the files: Typha_ctd_salinity_dd.csv and Typha_MI_ctd_salinity_2023_flmd.csv.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Upland tidal brackish marsh specific conductivity and salinity measurements, PIE LTER, Plum Island Sound, MA, May-December 2022

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS1993

Spectroscopic observations of the detached binary PG 1413 + 015

We present improved estimates of the stellar parameters of the eclipsing, precataclysmic binary system PG 1413 + 015 (GH Vir), which has an orbital period of only 8h16m. Model atmosphere fits a Balmer line profiles yield T(eff) = 48,800 +/- 1200 K and log g = 7.70 +/- 0.11 for the DAO white dwarf primary star, from which a mass of 0.51 +/- 0.04 solar mass is inferred using evolutionary models. An ultraviolet spectrum obtained with the IUE Observatory has a slope consistent with this temperature and the assumption of no interstellar extinction. A red CCD spectrum of the secondary star during the 12-minute total eclipse indicates a spectral type of M3 V-M5 V. Reanalysis of the eclipse light curve leads to an inferred radius of 0.15 solar radius and a mass of 0.10 solar mass for the secondary, the latter being marginally consistent with the spectral type. Reprocessing on the facing side of the secondary produces phase-dependent Balmer line emission and detectable variations in the continuum from 6500-9000 A. The observed levels of reprocessing are consistent with expectations based on the above stellar parameters.

Fulbright, Michael S.↗

DOE OSTI2012

CO AND H{sub 2} ABSORPTION IN THE AA TAURI CIRCUMSTELLAR DISK

The direct study of molecular gas in inner protoplanetary disks is complicated by uncertainties in the spatial distribution of the gas, the time variability of the source, and the comparison of observations across a wide range of wavelengths. Some of these challenges can be mitigated with far-ultraviolet spectroscopy. Using new observations obtained with the Hubble Space Telescope Cosmic Origins Spectrograph, we measure column densities and rovibrational temperatures for CO and H{sub 2} observed on the line of sight through the AA Tauri circumstellar disk. CO A - X absorption bands are observed against the far-UV continuum. The CO absorption is characterized by log{sub 10}(N({sup 12}CO)) = 17.5 {+-} 0.5 cm{sup -2} and T{sub rot}(CO) = 500{sup +500}{sub -200} K, although this rotational temperature may underestimate the local kinetic temperature of the CO-bearing gas. We also detect {sup 13}CO in absorption with an isotopic ratio of {approx}20. We do not observe H{sub 2} absorption against the continuum; however, hot H{sub 2} (v > 0) is detected in absorption against the Ly{alpha} emission line. We measure the column densities in eight individual rovibrational states, determining a total log{sub 10}(N(H{sub 2})) = 17.9{sup +0.6}{sub -0.3} cm{sup -2} with a thermal temperature of T(H{sub 2}) = 2500{sup +800}{sub -700} K. The high temperature of the molecules, the relatively small H{sub 2} column density, and the high inclination of the AA Tauri disk suggest that the absorbing gas resides in an inner disk atmosphere. If the H{sub 2} and CO are cospatial within a molecular layer {approx}0.6 AU thick, this region is characterized by {approx} 10{sup 5} cm{sup -3} with an observed (CO/H{sub 2}) ratio of {approx}0.4. We also find evidence for a departure from a purely thermal H{sub 2} distribution, suggesting that excitation by continuum photons and H{sub 2} formation may be altering the level populations in the molecular gas.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2020

Completion design improvement using a deep convolutional network

Maximizing stimulated natural and hydraulic fracture network is one of the primary hydraulic fracturing concerns for economic production from a horizontal shale gas well. Geomechanical facies and preexisting fractures in each stage are identified based on similarities in formation characteristics to optimize the locations of perforation clusters. This often requires analyzing large volumes of drilling, Logging While Drilling (LWD) and Measurement While Drilling (MWD) data. In this paper, we develop a methodology that calculates the mechanical specific energy (MSE) using real-time drill string acceleration signals directly from its definition. High resolution vibration signals have been collected using a tri-axial accerlometer, which was an auxiliary tool included in acoustic borehole imager. This technique provides a cost-efficient solution for engineered completion design. Furthermore, we adopt deep Convolutional Neural Network (CNN) with signal processing to build a data pipeline that effectively extracts patterns from dynamic acceleration signals for rock lateral MSE classification. First, we apply discrete wavelet transform and Short-Time Fourier Transform (STFT) for signal denoising and pattern recognition. Then we construct an image dataset using multi-scale image fusion at pixel level from 3 sensor channels, including axial, lateral acceleration spectrograms and zero-padded revolutions per minute (RPM). The resulted RGB image dataset includes 4,000 images of 5 MSE ranges with various rock strength conditions. Our results demonstrate that the proposed deep learning model can achieve more than 90% classification accuracy. The deep learning results, as a reference source, were applied in selected Marcellus Shale Energy and Environmental Lab (MSEEL) wells engineered completion located in the Marcellus shale gas site.

03 NATURAL GAS↗

DOE OSTI2014

A cell-local finite difference discretization of the low-order quasidiffusion equations for neutral particle transport on unstructured quadrilateral meshes

We present a quasidiffusion (QD) method for solving neutral particle transport problems in Cartesian XY geometry on unstructured quadrilateral meshes, including local refinement capability. Neutral particle transport problems are central to many applications including nuclear reactor design, radiation safety, astrophysics, medical imaging, radiotherapy, nuclear fuel transport/storage, shielding design, and oil well-logging. The primary development is a new discretization of the low-order QD (LOQD) equations based on cell-local finite differences. The accuracy of the LOQD equations depends on proper calculation of special non-linear QD (Eddington) factors from a transport solution. In order to completely define the new QD method, a proper discretization of the transport problem is also presented. The transport equation is discretized by a conservative method of short characteristics with a novel linear approximation of the scattering source term and monotonic, parabolic representation of the angular flux on incoming faces. Analytic and numerical tests are used to test the accuracy and spatial convergence of the non-linear method. All tests exhibit O(h{sup 2}) convergence of the scalar flux on orthogonal, random, and multi-level meshes.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2016

TU-D-209-05: Automatic Calculation of Organ and Effective Dose for CBCT and Interventional Fluoroscopic Procedures

Purpose: To compare PCXMC and EGSnrc calculated organ and effective radiation doses from cone-beam computed tomography (CBCT) and interventional fluoroscopically-guided procedures using automatic exposure-event grouping. Methods: For CBCT, we used PCXMC20Rotation.exe to automatically calculate the doses and compared the results to those calculated using EGSnrc with the Zubal patient phantom. For interventional procedures, we use the dose tracking system (DTS) which we previously developed to produce a log file of all geometry and exposure parameters for every x-ray pulse during a procedure, and the data in the log file is input into PCXMC and EGSnrc for dose calculation. A MATLAB program reads data from the log files and groups similar exposures to reduce calculation time. The definition files are then automatically generated in the format used by PCXMC and EGSnrc. Processing is done at the end of the procedure after all exposures are completed. Results: For the Toshiba Infinix CBCT LCI-Middle-Abdominal protocol, most organ doses calculated with PCXMC20Rotation closely matched those calculated with EGSnrc. The effective doses were 33.77 mSv with PCXMC20Rotation and 32.46 mSv with EGSnrc. For a simulated interventional cardiac procedure, similar close agreement in organ dose was obtained between the two codes; the effective doses were 12.02 mSv with PCXMC and 11.35 mSv with EGSnrc. The calculations can be completed on a PC without manual intervention in less than 15 minutes with PCXMC and in about 10 hours with EGSnrc, depending on the level of data grouping and accuracy desired. Conclusion: Effective dose and most organ doses in CBCT and interventional radiology calculated by PCXMC closely match those calculated by EGSnrc. Data grouping, which can be done automatically, makes the calculation time with PCXMC on a standard PC acceptable. This capability expands the dose information that can be provided by the DTS. Partial support from NIH Grant R01-EB002873 and Toshiba Medical Systems Corp.

60 APPLIED LIFE SCIENCES↗

NASA NTRS1996

Short-Term Chromospheric Variability in alpha Tauri (K5 III): Results from IUE Time Series Observations

We evaluate time series observations of chromospheric lines (Mg II, Mg I, and C II) for the K giant alpha Tau obtained using the IUE LWP camera at high dispersion. These observations cover a time span of about 2 weeks in 1994 February-March and were designed to resolve variations occurring within hours, days, and weeks. We consider the observational results in relation to theoretical acoustic heating models, motivated by the fact that alpha Tau may exhibit a basal (i.e., minimum) level of chromospheric activity. The data reveal flux variations between the extremes of 8% in Mg II h+k and 15% in each emission component. These variations occur on timescales as short as 8 hr but not on timescales longer than approx.3 days. For the h and k components, flux variations occurring on a timescale as short as 1.5 hr are also found. These changes are often not correlated (and are sometimes even anticorrelated), leading to remarkable differences in the h/k ratios. We argue that these results are consistent with the presence of strong acoustic shocks, which can lead to variable Mg II line emission when only a small number of strong shocks are propagating through the atmosphere. We deduce the electron density in the C II lambda 2325 line formation region to be log(base e) of N. approx. equals 9.0, in agreement with previous studies. Our data provide evidence that the Mg II basal flux limit for K giants might be a factor of 4 higher than suggested by Rutten et al.

Cuntz, Manfred↗

NASA NTRS2004

NASA LCLUC Program: An Integrated Forest Monitoring System for Central Africa

Central Africa has the second largest unfragmented block of tropical rain forest in the world; it is also one of the largest carbon and biodiversity reservoirs. With nearly one-third of the forest currently allocated for logging, the region is poised to undergo extensive land-use change. Through the mapping of the forests, our Integrated Forest Monitoring System for Central Africa (INFORMS) project aims to monitor habitat alteration, support biodiversity conservation, and promote better land-use planning and forest management. Designed as an interdisciplinary project, its goal is to integrate data acquired from satellites with field observations from forest inventories, wildlife surveys, and socio-economic studies to map and monitor forest resources. This project also emphasizes on collaboration and coordination with international, regional, national, and local partners-including non-profit, governmental, and commercial sectors. This project has been focused on developing remote sensing products for the needs of forest conservation and management, insuring that research findings are incorporated in forest management plans at the national level. The societal impact of INFORMS can be also appreciated through the development of a regional remote sensing network in central Africa. With a regional office in Kinshasa, (www.OSFAC.org), the contribution to the development of forest management plans for 1.5 million hectares of forests in northern Republic of Congo (www.tt-timber.com), and the monitoring of park encroachments in the Albertine region (Uganda and DRC) (www.albertinerift.org).

Laporte, Nadine↗

NASA NTRS2022

Chandra Observations of Six Peter Pan Disks: Diversity of X-Ray-driven Internal Photoevaporation Rates Does Not Explain Their Rare Longevity

We present Chandra X-ray observations of six previously identified Peter Pan objects, rare ∼40 Myr systems with evidence of primordial disk retention. We observe X-ray luminosities (0.8–3.0 keV) ranging from log Lx ∼ 27.7–29.1. We find that our Peter Pan sample exhibits X-ray properties similar to that of weak-lined T Tauri stars and do not exhibit evidence of stellar accretion induced X-ray suppression. Our observed Peter Pan X-ray luminosities are consistent with that measured for field dM stars of similar spectral type and age, implying their long primordial disk lifetimes are likely not a consequence of unusually faint X-ray host stars. Our derived X-ray photoevaporative mass-loss rates predict our systems have passed the point of rapid gas dispersal and call into question the impact of this internal mechanism for primordial disk dispersal around dM stars. Our qualitative assessment of the surrounding Peter Pan environments also does not predict unusually low levels of external photoevaporation relative to other respective moving group members. Overall, our results suggest Peter Pan disks may be a consequence of the low far-UV flux incident on the disk in low-mass dM stars given their relatively lower levels of accretion over the course of their pre-main-sequence evolution.

Stefan Laos↗

DOE OSTI2022

SDSS-IV MaNGA: Identification and multiwavelength properties of Type-1 AGN in the DR15 sample

ABSTRACT We present a method to identify type-1 active galactic nuclei (AGNs) in the central 3 arcsec integrated spectra of galaxies in the MaNGA DR15 sample. It is based on flux ratios estimates in spectral bands flanking the expected h α broad component h αBC. The high signal-to-noise ratio obtained (mean S/N = 84) permits the identification of h αBC without prior subtraction of the host galaxy (HG) stellar component. A final sample of 47 type-1 AGN is reported out of 4700 galaxies at z < 0.15. The results were compared with those from other methods based on the SDSS DR7 and MaNGA data. Detection of type-1 AGN in those works compared to our method goes from 26 per cent to 81 per cent. Spectral indexes were used to classify the type-1 AGN spectra according to different levels of AGN-HG contribution, finding 9 AGN-dominated, 14 intermediate, and 24 HG-dominated objects. Complementary data in NIR-MIR allowed us to identify type I AGN-dominated objects as blue and HG-dominated as red in the WISE colours. From NVSS and FIRST radio continuum data, we identify 5 HERGs (high-excitation radio galaxies) and 4 LERGs (low-excitation radio galaxies), three showing evidence of radio-jets in the FIRST maps. Additional X-ray data from ROSAT allowed us to build [O iii] and h αBC versus X-ray, NIR-MIR, and radio continuum diagrams, showing that L(h αBC) and L([O iii]) provide good correlations. The range in h αBC luminosity is wide 38 < logL(h αBC) < 44, with log FWHM(h αBC) ∼ 3–4, covering a range of Eddington ratios of −5.15 < log Lbol/LEdd < 0.70. Finally, we also identify and report ten possible changing-look AGN candidates.

Cortes-Suárez, Edgar↗

DOE OSTI2018

CO 2 -SCREEN tool: Application to the oriskany sandstone to estimate prospective CO 2 storage resource

Here, the ability to accurately predict the CO 2 storage resource in saline formations is important to make high-level, energy-related government policy and business decisions. CO 2 -SCREEN (Storage prospeCtive Resource Estimation Excel aNalysis) is a tool developed by the United States Department of Energy – National Energy Technology Laboratory (US-DOE-NETL) to screen saline formations for prospective CO 2 storage resources. CO 2 -SCREEN uses DOE methods and equations to serve as a consistent mechanism for calculating prospective CO 2 storage resources. CO 2 -SCREEN is comprised of two files: an Excel file used for inputs and outputs and a GoldSim Player file used to run Monte Carlo simulations. CO 2 -SCREEN requires input of physical geologic parameters (i.e. thickness, porosity) as well as efficiency factor ranges (i.e. net-to-gross thickness) to calculate a mass storage estimate. An application of CO 2 -SCREEN is demonstrated here using well log data from the Oriskany Sandstone portion in Pennsylvania. The Oriskany Sandstone is divided into 20 km x 20 km grid cells in which 151 cells contain well log data. CO 2 -SCREEN calculates prospective CO 2 storage resource for each grid cell based on the well log data and uses lithology and depositional environment information for efficiency factor ranges. The Oriskany Sandstone CO 2 storage resource estimate for Pennsylvania, calculated by CO 2 -SCREEN, ranges from 0.07 to 1.28 gigatons (Gt) with a P 50 value of 0.32 Gt. This resource assessment analysis is done to demonstrate the use of CO 2 -SCREEN and results are comparable to previous studies which encourages the application of CO 2 -SCREEN to other saline formations and warrants exploring the expansion of this tool to assess the CO 2 storage resource in other formations such as shale and depleted oil and gas reservoirs.

03 NATURAL GAS↗

DOE OSTI2016

P and S wave responses of bacterial biopolymer formation in unconsolidated porous media

This study investigated the P and S wave responses and permeability reduction during bacterial biopolymer formation in unconsolidated porous media. Column experiments with fine sands, where the model bacteria Leuconostoc mesenteroides were stimulated to produce insoluble biopolymer, were conducted while monitoring changes in permeability and P and S wave responses. The bacterial biopolymer reduced the permeability by more than 1 order of magnitude, occupying ~10% pore volume after 38 days of growth. This substantial reduction was attributed to the bacterial biopolymer with complex internal structures accumulated at pore throats. S wave velocity (V S ) increased by more than ~50% during biopolymer accumulation; this indicated that the bacterial biopolymer caused a certain level of stiffening effect on shear modulus of the unconsolidated sediment matrix at low confining stress conditions. Whereas replacing pore water by insoluble biopolymer was observed to cause minimal changes in P wave velocity (VP) due to the low elastic moduli of insoluble biopolymer. The spectral ratio analyses revealed that the biopolymer formation caused a ~50-80% increase in P wave attenuation (1/Q P ) at the both ultrasonic and subultrasonic frequency ranges, at hundreds of kHz and tens of kHz, respectively, and a ~50-60% increase in S wave attenuation (1/Q S ) in the frequency band of several kHz. Our results reveal that in situ biopolymer formation and the resulting permeability reduction can be effectively monitored by using P and S wave attenuation in the ultrasonic and subultrasonic frequency ranges. Finally, this suggests that field monitoring using seismic logging techniques, including time-lapse dipole sonic logging, may be possible.

58 GEOSCIENCES↗

DOE OSTI2011

TRY - a global database of plant traits

Plant traits – the morphological, anatomical, physiological, biochemical and phenological characteristics of plants and their organs – determine how primary producers respond to environmental factors, affect other trophic levels, influence ecosystem processes and services and provide a link from species richness to ecosystem functional diversity. Trait data thus represent the raw material for a wide range of research from evolutionary biology, community and functional ecology to biogeography. Here we present the global database initiative named TRY, which has united a wide range of the plant trait research community worldwide and gained an unprecedented buy-in of trait data: so far 93 trait databases have been contributed. The data repository currently contains almost three million trait entries for 69,000 out of the world's 300,000 plant species, with a focus on 52 groups of traits characterizing the vegetative and regeneration stages of the plant life cycle, including growth, dispersal, establishment and persistence. A first data analysis shows that most plant traits are approximately log-normally distributed, with widely differing ranges of variation across traits. Most trait variation is between species (interspecific), but significant intraspecific variation is also documented, up to 40% of the overall variation. Plant functional types (PFTs), as commonly used in vegetation models, capture a substantial fraction of the observed variation – but for several traits most variation occurs within PFTs, up to 75% of the overall variation. In the context of vegetation models these traits would better be represented by state variables rather than fixed parameter values. The improved availability of plant trait data in the unified global database is expected to support a paradigm shift from species to trait-based ecology, offer new opportunities for synthetic plant trait research and enable a more realistic and empirically grounded representation of terrestrial vegetation in Earth system models.

54 ENVIRONMENTAL SCIENCES↗