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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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DOE OSTI2019

Authentication Protocol for ICS without Encryption

Industrial control systems (ICS) describes the different types of control systems and associated instrumentation, which includes the devices, systems, networks, and controls used to operate and/or automate industrial processes. Depending on the industry, each ICS functions differently and are built to electronically manage tasks efficiently. Historically, industrial plants have included networking, and changes have been made over time without consideration for security. Many ICS devices currently have inadequate security features. Adding encryption in ICS is undesirable because many of the new detection method involves deep packet inspection. Therefore, we propose to develop a method of providing authentication between devices without encrypting the data. This testbed design will allow rapid development and experimentation with Cyber Physical Systems. Modbus connects to a supervisory computer with a Remote Terminal Unit (RTU) in Supervisory Control and Data Acquisition (SCADA) systems. Our project seeks to enhance security in the ICS environment by adding device authentication to the lower levels of the plant floor. This approach was selected as it allows verification of the sender of data from level 1/level 0 devices up to supervisory systems. This addition is desirable as it adds enhanced verification to the integrity of system data without obscuring (via encryption) the data being transmitted across the network. This is important because many ICS systems are real time critical (decryption adds to latency) and many other good security options require deep packet inspection (which encryption completely defeats). To accomplish this, a proof of concept of adding an authentication scheme was designed and will be tested with a common ICS protocol. The setup includes a single serial cable connecting the serial ports on two devices, a Master and a Minion. Authentication will occur in the following methods: - Data layer involving Transport Layer Security/Secure Socket Layer (TLS/SSL); - TCP/IP route implementation; - Key exchange algorithm; - Raspberry Pi programming for authentication. A portion of the setup includes adding Raspberry Pi into the system as the device is handling the authentication for the network traffic. Modbus is the chosen ICS protocol. It is used to transmit signals from instrumentation and control devices back to a main controller or data gathering system. Typically, the device identity is assumed but not verified. For verifying device identity, we constructed a digital signature architecture with TLS. A novel adaptation of this is to use only the digital signature that is provided and not the encryption capability. This allows ICS traffic to flow unobscured while still providing verification for the integrity of the data. Verification of this process will involve adding additional I/O level network devices with spoofed IP addresses and detecting the authenticated versus unauthenticated traffic. Our TLS implementation will have encryption disabled but should still allow for digital signing of data. This will enable our system to distinguish between real end devices and spoofed end devices. This experiment is presently building the test setup. It is focusing on a small setting to identify authenticated and unauthenticated devices on the network. This should allow for scaling to a larger network size after the initial proof of concept. One concern with this scheme is a certificate deployment has a large scale key management. Network size will thus increase the key management task for security. In addition, we believe that further research should be done on exploring the use of this method to defeat man-in-the-middle attacks.

42 ENGINEERING↗
DOE OSTI2023

Leveraging visible and near-infrared spectroelectrochemistry to calibrate a robust model for Vanadium(IV/V) in varying nitric acid and temperature levels

Spectroelectrochemistry and optimal design of experiments can be used to rapidly build accurate models for species quantification and enable a greater level of process awareness. Optical spectroscopy can provide vital elemental and molecular information, but several hurdles must be overcome before it can become a widely adopted analytical method for remote analysis in the nuclear field. Analytes with varying oxidation state, acid concentration, and fluctuating temperature must be efficiently accounted for to minimize time and resources in restrictive hot cell environments. The classic one-factor-at-a-time approach is not suitable for frequent calibration/maintenance operations in this setting. Therefore, a novel alternative was developed to characterize a system containing vanadium(IV/V) (0.01–0.1 M), nitric acid (0.1–4 M), and varying temperatures (20–45 °C). Here, spectroelectrochemistry methods were used to acquire a sample set selected by optimal design of experiments. This new approach allows for the accurate analysis of vanadium and HNO 3 concentration by leveraging UV–Vis–NIR absorption spectroscopy with robust and accurate chemometric models. The top model's root mean squared error of prediction percent values were 3.47%, 4.06%, 3.40%, and 10.9% for V(IV), V(V), HNO 3 , and temperature, respectively. These models, efficiently developed using the designed approach, exhibited strong predictive accuracy for vanadium and acid with varying oxidation states and temperature using only spectrophotometry, which advances current technology for real-world hot cell applications. Additionally, Nernstian analysis of the V(IV/V) standard potential was performed using traditional absorbance methods and multivariate curve resolution (MCR). The successful tests demonstrated that MCR Nernst tests may be valuable in highly convoluted spectral systems to better understand the redox processes' behavior.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2025

Cheaper and more noise-resilient quantum state preparation using eigenvector continuation

Subspace methods are powerful, noise-resilient methods that can effectively prepare ground states on quantum computers. The challenge is to get a subspace with a small condition number that spans the states of interest using minimal quantum resources. In this work, we will use eigenvector continuation to build a subspace from the low-lying states of a set of Hamiltonians. The basis vectors are prepared using truncated versions of standard state preparation methods such as imaginary-time evolution (ITE), adiabatic state preparation (ASP), and variational quantum eigensolver. By using these truncated methods combined with eigenvector continuation, we can directly improve upon them, obtaining more accurate ground-state energies at a reduced cost. We use several spin systems to demonstrate convergence even when methods like ITE and ASP fail, such as ASP in the presence of level crossings and ITE with vanishing energy gaps. We also showcase the noise resilience of this approach beyond the gains already made by having shallower quantum circuits. Furthermore, our findings suggest that eigenvector continuation can be used to improve existing state preparation methods in the near term.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2024

How Accurate Are Simulations and Experiments for the Lattice Energies of Molecular Crystals?

Molecular crystals play a central role in a wide range of scientific fields, including pharmaceuticals and organic semiconductor devices. However, they are challenging systems to model accurately with computational approaches because of a delicate interplay of intermolecular interactions such as hydrogen bonding and Van der Waals dispersion forces. Here, by exploiting recent algorithmic developments, we report the first set of diffusion Monte Carlo lattice energies for all 23 molecular crystals in the popular and widely used X23 dataset. Comparisons with previous state-of-the-art lattice energy predictions (on a subset of the dataset) and a careful analysis of experimental sublimation enthalpies reveals that high-accuracy computational methods are now at least as reliable as (computationally derived) experiments for the lattice energies of molecular crystals. Overall, this work demonstrates the feasibility of high-level explicitly correlated electronic structure methods for broad benchmarking studies in complex condensed phase systems, and signposts a route towards closer agreement between experiment and simulation. Published by the American Physical Society 2024

Physics↗
DOE OSTI2023

Using High-Resolution NSRDB Data to Evaluate Cloud Mask Forecast from WRF-Solar EPS

Validating spatiotemporal distributions of cloud forecasts using numerical weather prediction (NWP) models is difficult as this requires high-quality cloud-property at significantly high spatial and temporal resolution over extended periods of time. Observations of cloud properties, such as cloud mask, cloud optical thickness, and cloud type, are vital for assessing the capability of NWP models to forecast various types of clouds. Using the National Solar Radiation Database (NSRDB), this research evaluates ensemble cloud-mask predictions from the WRF-Solar ensemble prediction system (WRF-Solar EPS). From the WRF-Solar EPS, day-ahead solar forecasts for the contiguous United States (CONUS) for 2018 are simulated. Given the NSRDB data is accessible at a resolution of 2 km, we can calculate the cloud fraction across the 9-km grid of WRF-Solar EPS. This allows us to spatially assess the cloud-mask forecasts using two methods against the high-resolution NSRDB: (a) considering all 2-km NSRDB clouds in the forecast domain (EMAll), and (b) using a minimum cloud fraction threshold of 50% to designate a pixel as cloudy (EMP50). The low-resolution cloud masks from WRF-Solar EPS are evaluated directly against the cloud-resolving scale gridded observations from NSRDB using EMAll. With EMP50, we presume that scenes with less than 50% cloud cover from the 2-km NSRDB are clear. Thus, this assessment approach allows for a fair comparison with WRF-Solar EPS resolved to a 9-km grid. A method of point-by-point verification is used to evaluate dichotomous (yes/no) cloud mask predictions against the NSRDB. For each pixel of model extent, cloud frequency and traditional metrics (e.g., probability of detection, false alarm rate, and hit rate, etc.) are computed and compared with satellite-derived data sets. Mismatched cloud frequency (MCF) is computed to measure the present capability of WRF-Solar EPS in representing various types of clouds, which are categorized using three levels of cloud top height (CTH) and cloud optical depth (COD) across entire CONUS. Preliminary results show that the WRF-Solar EPS provides MCF values ranging from 9% to 46%, 16% to 33%, and 8% to 27% for low-level, middle-level, and high-level clouds, respectively, for three CTHs. The model produces MCFs ranging from 27% to 46%, 13% to 34%, and 8% to 19% for thin, medium-thickness, and thick clouds, respectively, for three CODs. The presentation will include a detailed description of the current outcomes as well as potential future extensions. The evaluation approach established in this study is readily extensible to the evaluation of cloud predictions from different ensemble NWP models. In addition, the findings of the suggested evaluation technique aid in identifying model weaknesses and will ultimately lead to advances in WRF-Solar EPS's skill in predicting clouds and solar irradiance.

cloud mask forecast↗
DOE OSTI2017

Considerations on the Use of Custom Accelerators for Big Data Analytics

Accelerators, including Graphic Processing Units (GPUs) for gen- eral purpose computation, many-core designs with wide vector units (e.g., Intel Phi), have become a common component of many high performance clusters. The appearance of more stable and reliable tools tools that can automatically convert code written in high-level specifications with annotations (such as C or C++) to hardware de- scription languages (High-Level Synthesis - HLS), is also setting the stage for a broader use of reconfigurable devices (e.g., Field Pro- grammable Gate Arrays - FPGAs) in high performance system for the implementation of custom accelerators, helped by the fact that new processors include advanced cache-coherent interconnects for these components. In this chapter, we briefly survey the status of the use of accelerators in high performance systems targeted at big data analytics applications. We argue that, although the progress in the use of accelerators for this class of applications has been sig- nificant, differently from scientific simulations there still are gaps to close. This is particularly true for the ”irregular” behaviors exhibited by no-SQL, graph databases. We focus our attention on the limits of HLS tools for data analytics and graph methods, and discuss a new architectural template that better fits the requirement of this class of applications. We validate the new architectural templates by mod- ifying the Graph Engine for Multithreaded System (GEMS) frame- work to support accelerators generated with such a methodology, and testing with queries coming from the Lehigh University Benchmark (LUBM). The architectural template enables better supporting the task and memory level parallelism present in graph methods by sup- porting a new control model and a enhanced memory interface. We show that out solution allows generating parallel accelerators, pro- viding speed ups with respect to conventional HLS flows. We finally draw conclusions and present a perspective on the use of reconfig- urable devices and Design Automation tools for data analytics.

Data Analytics↗
DOE OSTI2022

Resilience Design Patterns: A Structured Approach to Resilience at Extreme Scale (V.2.0)

Reliability is a serious concern for future extreme-scale high-performance computing (HPC) systems. Projections based on the current generation of HPC systems and technology roadmaps suggest the prevalence of very high fault rates in future systems. The errors resulting from these faults will propagate and generate various kinds of failures, which may result in outcomes ranging from result corruptions to catastrophic application crashes. Therefore, the resilience challenge for extreme-scale HPC systems requires coordination between various hardware and software technologies that are capable of handling a broad set of fault models at accelerated fault rates. Also, due to practical limits on power consumption in future HPC systems, they are likely to embrace innovative architectures, increasing the levels of hardware and software complexities. Therefore, the techniques that seek to improve resilience must navigate the complex trade-off space between resilience and the overheads to power consumption and performance. While the HPC community has developed various resilience solutions, application-level techniques as well as system-based solutions, the solution space of HPC resilience techniques remains fragmented. There are no formal methods to integrate the various HPC resilience techniques into composite solutions, nor are there methods to holistically evaluate the adequacy and efficacy of such solutions in terms of their protection coverage, and their performance & power efficiency characteristics. Additionally, few implementations of current resilience solutions are portable to newer architectures and software environments that will be deployed on future systems. We developed a new structured approach to the management of HPC resilience using the concept of resilience-based design patterns. In general, a design pattern is a repeatable solution to a commonly occurring problem. We identified the well-known solutions that are commonly used to deal with faults, errors and failures in HPC systems. In the initial design patterns specification (version 1.0), we described the various solutions, which address specific problems in the design of resilient HPC environments, in the form of patterns. Each pattern describes a problem caused by a fault, error or failure event in an HPC environment, and then describes the core of the solution of the problem in such a way that this solution may be adapted to different systems and implemented at different layers of the system stack. The catalog of these resilience design patterns provides designers with a collection of design elements. To construct complete resilience solutions using combinations of various patterns, we defined a framework that enhances HPC designers' understanding of the important constraints and the opportunities for the design patterns to be implemented and deployed at various layers of the system stack. The design framework is also useful for establishing interfaces and mechanisms to coordinate flexible fault management across hardware and software components, as well as to consider the trade-off between performance, resilience, and power consumption when constructing a solution. The resilience design patterns specification version 1.1 included more detailed explanations of the pattern solutions, the context in which the patterns are applicable, and the implications for hardware or software design. It also provided several additional examples and detailed case studies to demonstrate the use of patterns to build realistic solutions. In version 1.2 of the specification document, we have improved the pattern descriptions, including graphical representations of the pattern components. These improvements are largely based on critical comments, feedback and suggestions received from pattern experts and readers of the previous versions of the specification. The pattern classification has been modified to further clarify the relationships between pattern categories. This version of the specification also introduces a pattern language for resilience design patterns. The pattern language presents the patterns in the catalog as a network, revealing the relations among the resilience patterns. The language provides designers with the means to explore alternative techniques for handling a specific fault model that may have different efficiency and complexity characteristics. Using the pattern language also enables the design and implementation of comprehensive resilience solutions as a set of interconnected resilience patterns that can be instantiated across layers of the system stack. The overall goal of this work is to provide hardware and software designers, as well as the users and operators of HPC systems, a systematic methodology for the design and evaluation of resilience technologies in HPC systems that keep scientific applications running to a correct solution in a timely and cost-efficient manner despite frequent faults, errors, and failures of various types. Version 2.0 expands the resilience design pattern classification and catalog to include self-stabilization patterns and reliability, availability and performance models for each structural pattern.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2018

Effect of occupant behavior and air-conditioner controls on humidity in typical and high-efficiency homes

Increasing insulation levels and improved windows are reducing sensible cooling loads in high-efficiency homes. This trend raises concerns that the resulting shift in the balance of sensible and latent cooling loads may result in higher indoor humidity, occupant discomfort, and stunted adoption of high-efficiency homes. This study utilizes established moisture-buffering and air-conditioner latent degradation models in conjunction with an approach to stochastically model internal gains. Building loads and indoor humidity levels are compared for simulations of typical new construction homes and high-efficiency homes in 10 US cities. The sensitivity of indoor humidity to changes in cooling set point, air-conditioner capacity, and blower control parameters are evaluated. The results show that high-efficiency homes in humid climates have cooling loads with a higher fraction of latent loads than the typical new construction home, resulting in higher indoor humidity. Reducing the cooling set point is the easiest method to reduce indoor humidity, but it is not energy efficient, and overcooling may lead to occupant discomfort. Eliminating the blower operation at the end of cooling cycles and reducing the cooling airflow rate also reduce indoor humidity and with a smaller impact on energy use and comfort.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
DOE OSTI2019

Toward Fast and Reliable Potential Energy Surfaces for Metallic Pt Clusters by Hierarchical Delta Neural Networks

Data-driven machine learning force fields (MLF) are more and more popular in atomistic simulations, and exploit machine learning methods to predict energies and forces for unknown structures based on the knowledge learned from an existing reference database. The latter usually comes from density functional theory calculations. One main drawback of MLFs is that physical laws are not incorporated in the machine learning models and instead, MLFs are designed to be very flexible to simulate complex quantum chemistry potential energy surface (PES). In general, MLFs have poor transferability, and hence a very large trainset is required to span all the target feature space to get a reliable MLF. This procedure becomes more troublesome when the PES is complicated, with a large number of degrees of freedom, in which building a large database is inevitable and very expensive, especially when accurate but costly exchange-correlation functionals have to be used. In this manuscript, we exploit a high dimensional neural network potential (HDNNP) on Pt clusters of size 6 to 20 as one example. Furthermore, our standard level of energy calculation is DFT GGA (PBE) using a plane wave basis set. We introduce an approximate but fast level with the PBE functional and a minimal atomic orbital basis set, then a more accurate but expensive level, using a hybrid functional or non-local vdw functional and a plane wave basis set, is reliably predicted by learning the difference with HDNNP. Findings show that such a differential approach (named ΔHDNNP) can deliver very accurate predictions (error < 10 meV/atom) in reference to converged basis set energies as well as more accurate but expensive xc functional. The overall speedup can be as large as 900 for 20 atom Pt cluster. More importantly, ΔHDNNP shows much better transferability due to the intrinsic smoothness of delta potential energy surface, and accordingly one can use much smaller trainset data to obtain better accuracy than the conventional HDNNP. A multi-layer ΔHDNNP is thus proposed to obtain very accurate predictions versus expensive non-local vdW functional calculations in which the required trainset is further reduced. The approach can be easily generalized to any other machine learning methods and opens a path to study the structure and dynamics of Pt clusters and nanoparticles.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2023

A novel method for quantifying irradiation damage in nuclear graphite using Raman spectroscopy

Raman spectroscopy has long been used in studying irradiation damage in carbon/graphite materials. It is however unclear if the measurements from different types of materials are directly comparable. Further, decoupling the contribution from irradiation temperature and fluence to the total damage in nuclear graphite possessing irradiation damage gradient is currently not readily feasible as it requires a complete set of test reactor irradiation experiments over the relevant temperature and fluence range. A novel methodology has therefore been proposed and developed to quantify total irradiation damage evolution at crystal level based on graphite Raman G-band position shift. Specifically, G-band positions derived from a large number of spectra collected from the fractured surface of microfine-grained POCO ZXF-5Q graphite possessing proton irradiation damage gradient were plotted with open literature Raman data on HOPG, BEPO (AXGP graphite), PCEA and IG-110 graphite as a function of dpa. The total damage level within 2σ beam radius in this POCO graphite was estimated to be equivalent to ~2–5 dpa at ~350–370 °C. Derived G-band positions were then mapped to the three-stage amorphization trajectory model indicating beam centre area has entered the second stage, i.e., transitioning from nanocrystalline graphite into amorphous carbon. G-band position relative shift (ΔG) curve with a ‘turn-around’ peak as a function of total damage can be used for in-service lifetime prediction. Importantly, the developed methodology has the potential to ‘unify’ total damage levels across different grades of nuclear graphite caused by ion, neutron and proton irradiation at different temperatures.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2021

Fuel Property Effects on Knock Propensity and Thermal Efficiency in a Direct-Injection Spark-Ignition Engine

Engine knock remains one of the major barriers to further improvement in thermal efficiency of Direct-Injection Spark-Ignition (DISI) engines. While Research Octane Number and Motor Octane Number are often used as standard rating methods for knock resistance of fuels, the impacts of other fuel properties on knock propensity in modern engines such as heat of vaporization (HoV) and laminar flame speed (LFS) require better understanding in order to co-optimize fuels and engine designs to achieve higher thermal efficiency and lower CO2 emission. In the present study, computational fluid dynamics (CFD) is used to model a boosted DISI engine with a focus on knock prediction and fuel property effects. A level-set G-equation model is employed to capture turbulent premixed combustion, and is coupled with a transported Livengood-Wu (L-W) integral approach to predict autoignition in the unburnt region. A criterion associated with the L-W integral is developed to accurately predict knock onset and knock-limited spark-advance. This model is then applied to a sensitivity analysis of HoV and LFS on knock tendency and thermal efficiency. The pressure-temperature trajectory framework is applied and extended to study the fuel effects on auto-ignition process in the engine. An existing efficiency-based merit function, which is derived from experiments for boosted SI engines, is evaluated and improved based on the current CFD results.

DISI↗
DOE OSTI2026

Identifying Differential Equations in Fourier Domain (FourierIdent)

We investigate identifying differential equations in the frequency domain. Fourier analysis is an important tool in theoretical analysis and numerical solvers of differential equations, yet there is limited work in exploring this connection in the identification of differential equations. This paper aims to identify the underlying differential equation in the frequency domain, from a given single realization of the differential equation perturbed by noise. Such setting imposes difficulties which are different from other identification methods where computation is carried out in the physical domain. We propose several ways to mitigate the challenges arising from noise in data and large differences in the magnitudes of frequency responses. The main takeaways are that identifying differential equations solely in the frequency domain is challenging, the method we propose is based on a form of domain partitions in the frequency domain, and this method shows benefits for complex data even with high level of noise. We introduce a Fourier feature denoising, and define the meaningful data region and the core regions of features to reduce the effect of noise in the frequency domain and to enhance the accuracy in coefficient identification. The proposed method is tested on various differential equations with linear, nonlinear, and high-order derivative feature terms, and shows advantages on complex data with many frequency modes, even under high level of noise.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2021

Using a Coarse-Grained Modeling Framework to Identify Oligomeric Motifs with Tunable Secondary Structure

Coarse-grained modeling can be used to explore general theories that are independent of specific chemical detail. In this paper, we present cg_openmm, a Python-based simulation framework for modeling coarse-grained hetero-oligomers and screening them for structural and thermodynamic characteristics of cooperative secondary structures. cg_openmm facilitates the building of coarse-grained topology and random starting configurations, setup of GPU-accelerated replica exchange molecular dynamics simulations with the OpenMM software package, and features a suite of postprocessing thermodynamic and structural analysis tools. In particular, native contact analysis, heat capacity calculations, and free energy of folding calculations are used to identify and characterize cooperative folding transitions and stable secondary structures. In this work, we demonstrate the capabilities of cg_openmm on a simple 1–1 Lennard-Jones coarse-grained model, in which each residue contains 1 backbone and 1 side-chain bead. By scanning both nonbonded and bonded force-field parameter spaces at the coarse-grained level, we identify and characterize sets of parameters which result in the formation of stable helices through cooperative folding transitions. Furthermore, we show that the geometries and stabilities of these helices can be tuned by manipulating the force-field parameters.

36 MATERIALS SCIENCE↗
DOE OSTI2017

Projected Commutator DIIS Method for Accelerating Hybrid Functional Electronic Structure Calculations

The commutator direct inversion of the iterative subspace (commutator DIIS or C-DIIS) method developed by Pulay is an efficient and the most widely used scheme in quantum chemistry to accelerate the convergence of self-consistent field (SCF) iterations in Hartree–Fock theory and Kohn–Sham density functional theory. The C-DIIS method requires the explicit storage of the density matrix, the Fock matrix, and the commutator matrix. Hence, the method can only be used for systems with a relatively small basis set, such as the Gaussian basis set. We develop a new method that enables the C-DIIS method to be efficiently employed in electronic structure calculations with a large basis set such as planewaves for the first time. The key ingredient is the projection of both the density matrix and the commutator matrix to an auxiliary matrix called the gauge-fixing matrix. The resulting projected commutator-DIIS method (PC-DIIS) only operates on matrices of the same dimension as that consists of Kohn–Sham orbitals. The cost of the method is comparable to that of standard charge mixing schemes used in large basis set calculations. The PC-DIIS method is gauge-invariant, which guarantees that its performance is invariant with respect to any unitary transformation of the Kohn–Sham orbitals. We demonstrate that the PC-DIIS method can be viewed as an extension of an iterative eigensolver for nonlinear problems. We use the PC-DIIS method for accelerating Kohn–Sham density functional theory calculations with hybrid exchange–correlation functionals, and demonstrate its superior performance compared to the commonly used nested two-level SCF iteration procedure. Furthermore, we demonstrate that in the context of ab initio molecular dynamics (MD) simulation with hybrid functionals one can extrapolate the gauge-fixing matrix to achieve the goal of extrapolating the entire density matrix implicitly along the MD trajectory. Here, numerical results indicate that the new method significantly reduces the number of SCF iterations per MD step, compared to the commonly used strategy of extrapolating the electron density.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2018

First-Principles Integrated Adsorption Modeling for Selective Capture of Uranium from Seawater by Polyamidoxime Sorbent Materials

Nuclear power is a relatively carbon-free energy source that has the capacity to be utilized today in an effort to stem the tides of global warming. The growing demand for nuclear energy, however, could put significant strain on our uranium ore resources, and the mining activities utilized to extract that ore can leave behind long-term environmental damage. A potential solution to enhance the supply of uranium fuel is to recover uranium from seawater using amidoximated adsorbent fibers. This technology has been studied for decades but is currently plagued by the material’s relatively poor selectivity of uranium over its main competitor vanadium. In this work, we investigate the binding schemes between uranium, vanadium, and the amidoxime functional groups on the adsorbent surface. Using quantum chemical methods, binding strengths are approximated for a set of complexation reactions between uranium and vanadium with amidoxime functionalities. Those approximations are then coupled with a comprehensive aqueous adsorption model developed in this work to simulate the adsorption of uranium and vanadium under laboratory conditions. Experimental adsorption studies with uranium and vanadium over a wide pH range are performed, and the data collected are compared against simulation results to validate the model. It was found that coupling ab initio calculations with process level adsorption modeling provides accurate predictions of the adsorption capacity and selectivity of the sorbent materials. Furthermore, this work demonstrates that this multiscale modeling paradigm could be utilized to aid in the selection of superior ligands or ligand compositions for the selective capture of metal ions. Furthermore, this first-principles integrated modeling approach opens the door to the in silico design of next-generation adsorbents with potentially superior efficiency and selectivity for uranium over vanadium in seawater.

36 MATERIALS SCIENCE↗
DOE OSTI2026

EC-Bench: A Benchmark for Enzyme Commission Number Prediction

Enzymes are proteins that catalyze specific biochemical reactions in cells. Enzyme Commission (EC) numbers are used to annotate enzymes in a four-level hierarchy that classifies enzymes based on the specific chemical reactions they catalyze. Accurate EC number prediction is essential for understanding enzyme functions. Despite the availability of numerous methods for predicting EC numbers from protein sequences, there is no unified framework for evaluating and studying such methods systematically. This gap limits the ability of the community to identify the most effective approaches for enzyme annotation. We introduce EC-Bench, a benchmark for EC number prediction, consisting of 1) an initial representative set of existing methods (including homology-based, deep learning, contrastive learning, and language model methods), 2) existing and novel accuracy and efficiency performance metrics, and 3) selected datasets to allow for comprehensive comparative study. EC-Bench is open-source and provides a framework for researchers to not only compare among existing methods objectively under uniform conditions, but also to introduce and effectively evaluate performance of new methods in a comparative framework. To demonstrate the utility of EC-Bench, we perform extensive experimentation to compare the existing EC number prediction methods and establish their advantages and disadvantages in a variety of prediction tasks, namely “exact EC number prediction”, “EC number completion” and (partial or additional) “EC number recommendation”. We find wide variation in the performance of different methods, but also subtle but potentially useful differences in the performance of different methods across tasks and for different parts of the EC hierarchy.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2017

A Radio Emission Analysis of Classical Nova V351 Pup (1991)

Previously, Nova Puppis 1991 (V351 Pup) was measured to host one of the most massive ejections claimed in the literature. Multi-frequency radio detections from one epoch were published for this nova in the 1990's; and yet, the remaining data collected by the Karl G. Jansky Very Large Array (VLA) have remained unpublished. In this paper, we analyze the remaining unpublished data sets for V351 Pup at frequencies of 4.9, 8.4, 14.9, and 22.5 GHz. We fit the resulting light curve to a model of expanding thermal ejecta, under the assumption that the radio emission is dominated by free–free radiation and accounting for high levels of clumping in the ejecta. Images of V351 Pup in both the radio (from the VLA) and Hα+[N ii] (from Hubble Space Telescope) exhibit no aspherical structure, strengthening our assumption of spherical symmetry. From expansion parallax methods, we estimate the distance to V351 Pup to be 5.0 ± 1.5 kpc. Our light-curve fit yields a value of log{sub 10}(M{sub ej})=−5.2±0.7 M{sub ⊙} for the ejecta mass, implying that V351 Pup is on the low end of expectations for ejecta mass from classical novae. A comparison between our derived ejecta mass and theoretical models gives evidence for a very massive (1.25 M{sub ⊙}) white dwarf, which is consistent with spectroscopic evidence for an oxygen–neon white dwarf.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2017

New Suns in the Cosmos. IV. The Multifractal Nature of Stellar Magnetic Activity in Kepler Cool Stars

In the present study, we investigate the multifractal nature of a long-cadence time series observed by the Kepler mission for a sample of 34 M dwarf stars and the Sun in its active phase. Using the Multifractal Detrending Moving Average algorithm, which enables the detection of multifractality in nonstationary time series, we define a set of multifractal indices based on the multifractal spectrum profile as a measure of the level of stellar magnetic activity. This set of indices is given by the (A, Δα, C, H)-quartet, where A, Δα, and C are related to geometric features from the multifractal spectrum and the global Hurst exponent H describes the global structure and memorability of time series dynamics. As a test, we measure these indices and compare them with a magnetic index defined as S {sub ph} and verify the degree of correlation among them. First, we apply the Poincaré plot method and find a strong correlation between the 〈S{sub ph}〉 index and one of the descriptors that emerges from this method. As a result, we find that this index is strongly correlated with long-term features of the signal. From the multifractal perspective, the 〈S{sub ph}〉 index is also strongly linked to the geometric properties of the multifractal spectrum except for the H index. Furthermore, our results emphasize that the rotation period of stars is scaled by the H index, which is consistent with Skumanich’s relationship. Finally, our approach suggests that the H index may be related to the evolution of stellar angular momentum and a star’s magnetic properties.

79 ASTRONOMY AND ASTROPHYSICS↗