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At least 721 records · Page 40

A Pervasive Parallel Processing Framework for Data Visualization and Analysis at Extreme Scale

Most of today’s visualization libraries and applications are based off of what is known today as the visualization pipeline. In the visualization pipeline model, algorithms are encapsulated as “filtering” components with inputs and outputs. These components can be combined by connecting the outputs of one filter to the inputs of another filter. The visualization pipeline model is popular because it provides a convenient abstraction that allows users to combine algorithms in powerful ways. Unfortunately, the visualization pipeline cannot run effectively on exascale computers. Experts agree that the exascale machine will comprise processors that contain many cores. Furthermore, physical limitations will prevent data movement in and out of the chip (that is, between main memory and the processing cores) from keeping pace with improvements in overall compute performance. To use these processors to their fullest capability, it is essential to carefully consider memory access. This is where the visualization pipeline fails. Each filtering component in the visualization library is expected to take a data set in its entirety, perform some computation across all of the elements, and output the complete results. The process of iterating over all elements must be repeated in each filter, which is one of the worst possible ways to traverse memory when trying to maximize the number of executions per memory access. This project investigates a new type of visualization framework that exhibits a pervasive parallelism necessary to run on exascale machines. Our framework achieves this by defining algorithms in terms of functors, which are localized, stateless operations. Functors can be composited in much the same way as filters in the visualization pipeline. But, functors’ design allows them to be concurrently running on massive amounts of lightweight threads. Only with such fine-grained parallelism can we hope to fill the billions of threads we expect will be necessary for efficient computation on an exascale computer. This project concludes with a functional prototype containing pervasively parallel algorithms that perform demonstratively well on many-core processors. These algorithms are fundamental for performing data analysis and visualization at extreme scale.

97 MATHEMATICS AND COMPUTING↗

Online data analysis and reduction: An important co-design motif for extreme-scale computers

A growing disparity between supercomputer computation speeds and I/O rates means that it is rapidly becoming infeasible to analyze supercomputer application output only after that output has been written to a file system. Instead, data-generating applications must run concurrently with data reduction and/or analysis operations, with which they exchange information via high-speed methods such as interprocess communications. The resulting parallel computing motif, online data analysis and reduction (ODAR), has important implications for both application and HPC systems design. Here we introduce the ODAR motif and its co-design concerns, describe a co-design process for identifying and addressing those concerns, present tools that assist in the co-design process, and present case studies to illustrate the use of the process and tools in practical settings.

Data Analysis↗

Evaluation of In-Situ Analysis Strategies at Scale for Power Efficiency and Scalability

The increasing gap between available compute power and I/O capabilities is resulting in simulation pipelines running on leadership computing facilities being reformulated. In particular, in-situ processing is complementing conventional post-process analysis, however, it can be performed by using the same compute resources as the simulation or using secondary dedicated resources. In this paper, we focus on three different in-situ analysis strategies, which use the same compute resources as the ongoing simulation but different data movement strategies. We evaluate the costs incurred by these strategies in terms of run time, scalability and power/energy consumption. Furthermore, we extrapolate power behavior to peta-scale and investigate different design choices through projections. Experimental evaluation at full machine scale on Titan supports that using fewer cores per node for in-situ analysis is the optimum choice in terms of scalability. Hence, further research effort should be devoted towards developing in-situ analysis techniques following this strategy in future high-end systems.

97 MATHEMATICS AND COMPUTING↗

The Ultra-scale Visualization Climate Data Analysis Tools (UV-CDAT): Data Analysis and Visualization for Geoscience Data

To support interactive visualization and analysis of complex, large-scale climate data sets, UV-CDAT integrates a powerful set of scientific computing libraries and applications to foster more efficient knowledge discovery. Connected through a provenance framework, the UV-CDAT components can be loosely coupled for fast integration or tightly coupled for greater functionality and communication with other components. This framework addresses many challenges in the interactive visual analysis of distributed large-scale data for the climate community.

97 MATHEMATICS AND COMPUTING↗

Analysis of the 2H-evaporator scale samples (HTF-17-56, -57)

Savannah River National Laboratory analyzed scale samples from both the wall and cone sections of the 242-16H Evaporator prior to chemical cleaning. The samples were analyzed for uranium and plutonium isotopes required for a Nuclear Criticality Safety Assessment of the scale removal process. The analysis of the scale samples found the material to contain crystalline nitrated cancrinite and clarkeite. Samples from both the wall and cone contain depleted uranium. Uranium concentrations of 16.8 wt% 4.76 wt% were measured in the wall and cone samples, respectively. The ratio of plutonium isotopes in both samples is ~85% Pu-239 and ~15% Pu-238 by mass and shows approximately the same 3.5 times higher concentration in the wall sample versus the cone sample as observed in the uranium concentrations. The mercury concentrations measured in the scale samples were higher than previously reported values. The wall sample contains 19.4 wt% mercury and the cone scale sample 11.4 wt% mercury. The results from the current scales samples show reasonable agreement with previous 242-16H Evaporator scale sample analysis; however, the uranium concentration in the current wall sample is substantially higher than previous measurements.

2H evaporator system↗

Performance Analysis, Modeling and Scaling of HPC Applications and Tools

E cient use of supercomputers at DOE centers is vital for maximizing system throughput, mini- mizing energy costs and enabling science breakthroughs faster. This requires complementary e orts along several directions to optimize the performance of scienti c simulation codes and the under- lying runtimes and software stacks. This in turn requires providing scalable performance analysis tools and modeling techniques that can provide feedback to physicists and computer scientists developing the simulation codes and runtimes respectively. The PAMS project is using time allocations on supercomputers at ALCF, NERSC and OLCF to further the goals described above by performing research along the following fronts: 1. Scaling Study of HPC applications; 2. Evaluation of Programming Models; 3. Hardening of Performance Tools; 4. Performance Modeling of Irregular Codes; and 5. Statistical Analysis of Historical Performance Data. We are a team of computer and computational scientists funded by both DOE/NNSA and DOE/ ASCR programs such as ECRP, XStack (Traleika Glacier, PIPER), ExaOSR (ARGO), SDMAV II (MONA) and PSAAP II (XPACC). This allocation will enable us to study big data issues when analyzing performance on leadership computing class systems and to assist the HPC community in making the most e ective use of these resources.

97 MATHEMATICS AND COMPUTING↗

The spatial variation of vegetation changes at very coarse scales

Previous analysis (Townshend and Justice 1988) is extended to examine the spatial variations in images of the normalized difference vegetation index (NDVI) of seven areas. These images were derived by subtracting corresponding pixel values from pairs of registered MSS images. The changes depicted by these derived images were analyzed by scale variance analysis for pixel sizes between 4 km and 64 km. It is shown that for some areas substantial changes are detectable at these very coarse scales, although there is less contrast between the areas than at finer spatial resolutions below 1 km. In all the areas the total spatial variability of the images is contributed at a wide variety of spatial scales.

Townshend, John R. G.↗

Platform for efficient large-scale storage and analysis of multi-omics data in plant and microbial systems (Final Technical Report)

Genomic variation at the sequence level fundamentally affects the phenotypic state of all organisms at all stages of development, while dynamic processes such as changes in the epigenome (e.g. DNA methylation state) and transcriptome regulate the specific phenotype expressed at any given state of development based upon that genomic variation. In plants, DNA methylation is a particularly important mechanism for both regulating transcriptomic expression and for management of genomic variations that could be deleterious to the organism due to the presence of active retrotransposons in plant genomes. While DNA methylation is heritable, it is also dynamic through a given plant’s development and life cycle, particularly during the development from seed to mature specimen suggesting variations in DNA methylation could be critical regulators of biologically and commercially important phenotypes such as time to flowering; in addition, plant DNA methylation is more complex than that of animals, with methylation of CHG and CHH trinucleotides evident in addition to the better-known CG methylation. The complexity of plant DNA methylation and its interplay with genomic sequence variation, transcriptomics and other epigenomic factors demand a storage and analysis framework that can cope with the complexity both within a single specimen and with analyses that span many individuals and even many species, such as attempts to extend models from model organisms to commercially relevant species. In addition to complexity, the rapid development and proliferation of sequencing technology has led to an explosion of data volume that conventional storage and analysis solutions will likely be unable to cope with in the long run. We proposed to study these with suitable distributed storage and computation and therefore for the application of cloud computing to biological analyses; integrate with existing data sources and compatible with virtually any interface use case, from fully automated shell scripts to notebooks and do all these at scale in this STTR grant.

60 APPLIED LIFE SCIENCES↗

Evaluation of PERSIANN-CDR Constructed Using GPCP V2.2 and V2.3 and A Comparison with TRMM 3B42 V7 and CPC Unified Gauge-Based Analysis in Global Scale

Providing reliable long-term global precipitation records at high spatial and temporal resolutions is crucial for climatological studies. Satellite-based precipitation estimations are a promising alternative to rain gauges for providing homogeneous precipitation information. Most satellite-based precipitation products suffer from short-term data records, which make them unsuitable for various climatological and hydrological applications. However, Precipitation Estimation from Remotely Sensed Information using Artificial Neural Networks-Climate Data Record (PERSIANN-CDR) provides more than 35 years of precipitation records at 0.25° × 0.25° spatial and daily temporal resolutions. The PERSIANN-CDR algorithm uses monthly Global Precipitation Climatology Project (GPCP) data, which has been recently updated to version 2.3, for reducing the biases in the output of the PERSIANN model. In this study, we constructed PERSIANN-CDR using the newest version of GPCP (V2.3). We compared the PERSIANN-CDR dataset that is constructed using GPCP V2.3 (from here on referred to as PERSIANN-CDR V2.3) with the PERSIANN-CDR constructed using GPCP V2.2 (from here on PERSIANN-CDR V2.2), at monthly and daily scales for the period from 2009 to 2013. First, we discuss the changes between PERSIANN-CDR V2.3 and V2.2 over the land and ocean. Second, we evaluate the improvements in PERSIANN-CDR V2.3 with respect to the Climate Prediction Center (CPC) unified gauge-based analysis, a gauged-based reference, and Tropical Rainfall Measuring Mission (TRMM 3B42 V7), a commonly used satellite reference, at monthly and daily scales. The results show noticeable differences between PERSIANN-CDR V2.3 and V2.2 over oceans between 40° and 60° latitude in both the northern and southern hemispheres. Monthly and daily scale comparisons of the two bias-adjusted versions of PERSIANN-CDR with the above-mentioned references emphasize that PERSIANN-CDR V2.3 has improved mostly over the global land area, especially over the CONUS and Australia. The updated PERSIANN-CDR V2.3 data has replaced V2.2 data for the 2009–2013 period on CHRS data portal and NOAA National Centers for Environmental Information (NCEI) Program.

54 ENVIRONMENTAL SCIENCES↗

Component Cost Analysis of Large Scale Systems

The ideas of cost decomposition is summarized to aid in the determination of the relative cost (or 'price') of each component of a linear dynamic system using quadratic performance criteria. In addition to the insights into system behavior that are afforded by such a component cost analysis CCA, these CCA ideas naturally lead to a theory for cost-equivalent realizations.

Skelton, R. E.↗

Simulation of Wind Turbine Performance and Loading Patterns using a Coupled Meso-scale/Micro-scale Flow Analysis Model

HELIOS simulations were conducted for the WPS-30 turbine from the Sexbierum experimental site. The MMCI module was used to include the effects of the atmospheric boundary layer using the strategy described in the methodology section. In Figure 1 , the thrust and power variation for the WRF/Helios (Meso-scale/micro-scale simulation) is compared with measured power and stand-alone Helios computations (uniform inflow). The unsteady variations in power and thrust caused by the turbulent inflow conditions is clearly evident from these figures. Note that the mean hub height velocity could not be exactly matched to the uniform inflow values of 8 m/s because of constraints in adjusting the geostrophic wind and roughness length in Meso-scale WRF simulations. The offset in mean power and thrust notable in the figures are because of the small difference in the mean wind speed. Nonetheless, these results provide proof-of-concept of the integrated Meso-scale/Micro-scale simulation capability developed as part of this work. To further substantiate the effects of turbulent inflow, flow visualizations (iso-surfaces of vorticity overlaid on contours of velocity magnitude) are shown in Figure 2 . Meandering of the vortex wake and eventual breakdown are observed in the flow visualizations. Vortex breakdown is observed to occur between 1.5 and 2.5 diameter distance from the turbine. In uniform inflow (not shown here), the vortex wake persists to much longer distance of about 5 diameters before beginning to breakdown. It is expected that the vortex breakdown will be strongly correlated with the turbulence intensity of the inflow. The capability developed herein provides enabling technology for analyzing and characterizing such effects.

17 WIND ENERGY↗

Timing of Formal Phase Safety Reviews for Large-Scale Integrated Hazard Analysis

Integrated hazard analysis (IHA) is a process used to identify and control unacceptable risk. As such, it does not occur in a vacuum. IHA approaches must be tailored to fit the system being analyzed. Physical, resource, organizational and temporal constraints on large-scale integrated systems impose additional direct or derived requirements on the IHA. The timing and interaction between engineering and safety organizations can provide either benefits or hindrances to the overall end product. The traditional approach for formal phase safety review timing and content, which generally works well for small- to moderate-scale systems, does not work well for very large-scale integrated systems. This paper proposes a modified approach to timing and content of formal phase safety reviews for IHA. Details of the tailoring process for IHA will describe how to avoid temporary disconnects in major milestone reviews and how to maintain a cohesive end-to-end integration story particularly for systems where the integrator inherently has little to no insight into lower level systems. The proposal has the advantage of allowing the hazard analysis development process to occur as technical data normally matures.

Massie, Michael J.↗

Full-scale testing and analysis of fuselage structure

This paper presents recent results from a program in the Boeing Commercial Airplane Group to study the behavior of cracks in fuselage structures. The goal of this program is to improve methods for analyzing crack growth and residual strength in pressurized fuselages, thus improving new airplane designs and optimizing the required structural inspections for current models. The program consists of full-scale experimental testing of pressurized fuselage panels in both wide-body and narrow-body fixtures and finite element analyses to predict the results. The finite element analyses are geometrically nonlinear with material and fastener nonlinearity included on a case-by-case basis. The analysis results are compared with the strain gage, crack growth, and residual strength data from the experimental program. Most of the studies reported in this paper concern the behavior of single or multiple cracks in the lap joints of narrow-body airplanes (such as 727 and 737 commercial jets). The phenomenon where the crack trajectory is curved creating a 'flap' and resulting in a controlled decompression is discussed.

Miller, M.↗

Automated Detection of Microaneurysms Using Scale-Adapted Blob Analysis and Semi-Supervised Learning

Despite several attempts, automated detection of microaneurysm (MA) from digital fundus images still remains to be an open issue. This is due to the subtle nature of MAs against the surrounding tissues. In this paper, the microaneurysm detection problem is modeled as finding interest regions or blobs from an image and an automatic local-scale selection technique is presented. Several scale-adapted region descriptors are then introduced to characterize these blob regions. A semi-supervised based learning approach, which requires few manually annotated learning examples, is also proposed to train a classifier to detect true MAs. The developed system is built using only few manually labeled and a large number of unlabeled retinal color fundus images. The performance of the overall system is evaluated on Retinopathy Online Challenge (ROC) competition database. A competition performance measure (CPM) of 0.364 shows the competitiveness of the proposed system against state-of-the art techniques as well as the applicability of the proposed features to analyze fundus images.

59 BASIC BIOLOGICAL SCIENCES↗

Improving representation of convective transport for scale‐aware parameterization: 2. Analysis of cloud‐resolving model simulations

Abstract Following Part I, in which 3‐D cloud‐resolving model (CRM) simulations of a squall line and mesoscale convective complex in the midlatitude continental and the tropical regions are conducted and evaluated, we examine the scale dependence of eddy transport of water vapor, evaluate different eddy transport formulations, and improve the representation of convective transport across all scales by proposing a new formulation that more accurately represents the CRM‐calculated eddy flux. CRM results show that there are strong grid‐spacing dependencies of updraft and downdraft fractions regardless of altitudes, cloud life stage, and geographical location. As for the eddy transport of water vapor, updraft eddy flux is a major contributor to total eddy flux in the lower and middle troposphere. However, downdraft eddy transport can be as large as updraft eddy transport in the lower atmosphere especially at the mature stage of midlatitude continental convection. We show that the single‐updraft approach significantly underestimates updraft eddy transport of water vapor because it fails to account for the large internal variability of updrafts, while a single downdraft represents the downdraft eddy transport of water vapor well. We find that using as few as three updrafts can account for the internal variability of updrafts well. Based on the evaluation with the CRM simulated data, we recommend a simplified eddy transport formulation that considers three updrafts and one downdraft. Such formulation is similar to the conventional one but much more accurately represents CRM‐simulated eddy flux across all grid scales.

Liu, Yi‐Chin↗

Sizing up the milky way: a bayesian mixture model meta-analysis of photometric scale length measurements

The exponential scale length (L {sub d}) of the Milky Way’s (MW’s) disk is a critical parameter for describing the global physical size of our Galaxy, important both for interpreting other Galactic measurements and helping us to understand how our Galaxy fits into extragalactic contexts. Unfortunately, current estimates span a wide range of values and are often statistically incompatible with one another. Here, we perform a Bayesian meta-analysis to determine an improved, aggregate estimate for L {sub d}, utilizing a mixture-model approach to account for the possibility that any one measurement has not properly accounted for all statistical or systematic errors. Within this machinery, we explore a variety of ways of modeling the nature of problematic measurements, and then employ a Bayesian model averaging technique to derive net posterior distributions that incorporate any model-selection uncertainty. Our meta-analysis combines 29 different (15 visible and 14 infrared) photometric measurements of L {sub d} available in the literature; these involve a broad assortment of observational data sets, MW models and assumptions, and methodologies, all tabulated herein. Analyzing the visible and infrared measurements separately yields estimates for L {sub d} of 2.71{sub −0.20}{sup +0.22} kpc and 2.51{sub −0.13}{sup +0.15} kpc, respectively, whereas considering them all combined yields 2.64 ± 0.13 kpc. The ratio between the visible and infrared scale lengths determined here is very similar to that measured in external spiral galaxies. We use these results to update the model of the Galactic disk from our previous work, constraining its stellar mass to be 4.8{sub −1.1}{sup +1.5}×10{sup 10} M {sub ⊙}, and the MW’s total stellar mass to be 5.7{sub −1.1}{sup +1.5}×10{sup 10} M {sub ⊙}.

79 ASTRONOMY AND ASTROPHYSICS↗

Full-Scale Test and Analysis Results of a PRSEUS Fuselage Panel to Assess Damage Containment Features

Integrally stitched composite technology is an area that shows promise in enhancing the structural integrity of aircraft and aerospace structures. The most recent generation of this technology is the Pultruded Rod Stitched Efficient Unitized Structure (PRSEUS) concept. The goal of the PRSEUS concept relevant to this test is to provide damage containment capability for composite structures while reducing overall structural weight. The National Aeronautics and Space Administration (NASA), the Federal Aviation Administration (FAA), and The Boeing Company have partnered in an effort to assess the damage containment features of a full-scale curved PRSEUS panel using the FAA Full-Scale Aircraft Structural Test Evaluation and Research (FASTER) facility. A single PRSEUS test panel was subjected to axial tension, internal pressure, and combined axial tension and internal pressure loads. The test results showed excellent performance of the PRSEUS concept. No growth of Barely Visible Impact Damage (BVID) was observed after ultimate loads were applied. With a two-bay notch severing the central stringer, damage was contained within the two-bay region well above the required limit load conditions. Catastrophic failure was well above the ultimate load level. Information describing the test panel and procedure has been previously presented, so this paper focuses on the experimental procedure, test results, nondestructive inspection results, and preliminary test and analysis correlation.

Bergan, Andrew↗

Full-Scale Test and Analysis of a PRSEUS Fuselage Panel to Assess Damage-Containment Features

Stitched composite technology has the potential to substantially decrease structural weight through enhanced damage containment capabilities. The most recent generation of stitched composite technology, the Pultruded Rod Stitched Efficient Unitized Structure (PRSEUS) concept, has been shown to successfully arrest damage at the sub-component level through tension testing of a three stringer panel with damage in the form of a two-bay notch. In a joint effort undertaken by the National Aeronautics and Space Administration (NASA), the Federal Aviation Administration (FAA), and the Boeing Company, further studies are being conducted to characterize the damage containment features of the PRSEUS concept. A full-scale residual strength test will be performed on a fuselage panel to determine if the load capacity will meet strength, deformation, and damage tolerance requirements. A curved panel was designed, fabricated, and prepared for residual strength testing. A pre-test Finite Element Model (FEM) was developed using design allowables from previous test programs to predict test panel deformation characteristics and margins of safety. Three phases of testing with increasing damage severity include: (1) as manufactured; (2) barely visible impact damage (BVID) and visible impact damage (VID); and (3) discrete source damage (DSD) where the panel will be loaded to catastrophic failure. This paper presents the background information, test plan, and experimental procedure. This paper is the first of several future articles reporting the test preparations, results, and analysis conducted in the test program.

Bergan, Andrew↗