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At least 721 records · Page 40

Global optimization algorithms to compute thermodynamic equilibria in large complex systems with performance considerations

Several global optimization methods are reviewed that attempt to ensure that the integral Gibbs energy of a closed isothermal isobaric system is a global minimum to satisfy the necessary and sufficient conditions for thermodynamic equilibrium. In particular, the integral Gibbs energy function of a multicomponent system containing non-ideal phases may be highly non-linear and non-convex, which makes finding a global minimum a challenge. Consequently, a poor numerical approach may lead one to the false belief of equilibrium. Furthermore, confirming that one reaches a global minimum and that this is achieved with satisfactory computational performance becomes increasingly more challenging in systems containing many chemical elements and a correspondingly large number of species and phases. Several numerical methods that have been used for this specific purpose are reviewed with a benchmark study of three of the more promising methods using five case studies of varying complexity. A modification of the conventional Branch and Bound method is presented that is well suited to a wide array of thermodynamic applications, including complex phases with many constituents and sublattices, and ionic phases that must adhere to charge neutrality constraints. Also, a novel method is presented that efficiently solves the system of linear equations that exploits the unique structure of the Hessian matrix, which reduces the calculation from a O(N 3 ) operation to a O(N) operation. As a result, this combined approach demonstrates efficiency, reliability and capabilities that are favorable for integration of thermodynamic computations into multi-physics codes with inherent performance considerations.

97 MATHEMATICS AND COMPUTING↗

A parallel and performance portable implementation of a full-field crystal plasticity model

We have developed a parallel implementation of an Elasto-Viscoplastic Fast Fourier Transform-based (EVPFFT) micromechanical solver to enable computationally efficient crystal plasticity modeling for polycrystalline materials. Our primary focus lies in achieving performance portability, allowing a single EVPFFT implementation to run optimally on various homogeneous architectures, including multi-core Central Processing Units (CPUs), as well as on heterogeneous computer architectures comprising multi-core CPUs and Graphics Processing Units (GPUs) from different vendors. To accomplish this goal, we have leveraged MATAR, a C++ software library that simplifies the creation and utilization of multidimensional dense or sparse matrix and array data structures. These data structures are designed to be portable across diverse architectures through the use of Kokkos, a performance-portable library. Additionally, we have employed the Message Passing Interface (MPI) to efficiently distribute the computational workload among processors. The heFFTe (Highly Efficient FFT for Exascale) library is used to facilitate the performance portability of the fast Fourier transforms (FFTs) computation. The computational performance of EVPFFT is evaluated and presented in terms of parallel scalability and simulation runtime on different high-performance computing (HPC) architectures. As a result, the utility of the developed framework to efficiently simulate the micro-mechanical fields in polycrystalline microstructures in engineering applications is discussed.

36 MATERIALS SCIENCE↗

Scalable preconditioning for the stabilized contact mechanics problem

We present a family of preconditioning strategies for the contact problem in fractured and faulted porous media. We combine low-order continuous finite elements to simulate the bulk deformation with piecewise constant Lagrange multipliers to impose the frictional contact constraints. This formulation is not uniformly inf-sup stable and requires stabilization. We improve previous work by Franceschini et al. (2020) by introducing a novel jump stabilization technique that requires only local geometrical and mechanical properties. We then design scalable preconditioning strategies that take advantage of the block structure of the Jacobian matrix using a physics-based partitioning of the unknowns by field type, namely displacement and Lagrange multipliers. The key to the success of the proposed preconditioners is a pseudo-Schur complement obtained by eliminating the Lagrange multiplier degrees of freedom, which can then be efficiently solved using an optimal multigrid method. Numerical results, including complex real-world problems, are presented to illustrate theoretical properties, scalability and robustness of the preconditioner. A comparison with other approaches available in the literature is also provided.

58 GEOSCIENCES↗

Microstructures and mechanical properties of a modified 9Cr ferritic-martensitic steel in the as-built condition after additive manufacturing

A newly developed nano-structured high-Mn 9Cr ferritic-martensitic (FM) steel designed for additive manufacturing (Additive-manufactured Nanostructured Alloy, ANA) was fabricated via the direct energy deposition method. The as-printed ANA2 showed tensile properties (strength and elongation) and Charpy impact toughness (upper-shelf energy and ductile-brittle transition temperature) comparable to oxide-dispersion-strengthened (ODS) Eurofer and PM2000. Compared with wrought P91, the as-built ANA2 showed significantly higher yield strength but inferior Charpy impact toughness and ductility. Microstructural characterization revealed uniformly distributed sub-micron pores, an extremely high dislocation density, and a high density of ultrafine nano-structured precipitates in the matrix. The microstructures indicated the dislocations as the dominant strengthening element and the ultrafine precipitates as the primary contribution to estimated irradiation sink density. This work demonstrates the ability to exploit the unique consolidation properties of additive manufacturing to fabricate steels which marry the benefits of both ODS alloys and conventionally processed FM steels.

36 MATERIALS SCIENCE↗

Extracellular matrix in lung development, homeostasis and disease

Here, the lung's unique extracellular matrix (ECM), while providing structural support for cells, is critical in the regulation of developmental organogenesis, homeostasis and injury-repair responses. The ECM, via biochemical or biomechanical cues, regulates diverse cell functions, fate and phenotype. The composition and function of lung ECM become markedly deranged in pathological tissue remodeling. ECM-based therapeutics and bioengineering approaches represent promising novel strategies for regeneration/repair of the lung and treatment of chronic lung diseases. In this review, we assess the current state of lung ECM biology, including fundamental advances in ECM composition, dynamics, topography, and biomechanics; the role of the ECM in normal and aberrant lung development, adult lung diseases and autoimmunity; and ECM in the regulation of the stem cell niche. We identify opportunities to advance the field of lung ECM biology and provide a set recommendations for research priorities to advance knowledge that would inform novel approaches to the pathogenesis, diagnosis, and treatment of chronic lung diseases.

59 BASIC BIOLOGICAL SCIENCES↗

Evaluation of microstructural development in electron beam melted Ti-6Al-4V

In the current work an investigation of the microstructures of EBM built Ti-6Al-4V test bars has been performed using OM, SEM, TEM and XRD. It has been found that the prior {beta} phase, that formed during the initial solidification, possesses a column shaped morphology with growing direction parallel to built direction. Typical ({alpha} + {beta}) structures namely Widmanstaetten {alpha} platelets with rod-like {beta} phase formed on the interfaces of the fine {alpha} grains, have been observed in the columnar prior {beta} grains. Grain boundary {alpha} phase was found to be formed around the boundaries of the columnar prior {beta} grains. Different phases present in the parts, especially the BCC {beta} phases have been characterized. The TEM/EDX results indicate very high V composition in the {beta} phase. Results of TEM/SAED and XRD also revealed that a superlattice structure could be present in the {beta} phase. Phase transformation sequence is discussed according to the processing history and the microstructures observed. - Highlights: Black-Right-Pointing-Pointer {alpha} + {beta} and individual {beta} phase is observed and characterized by SEM, TEM and XRD. Black-Right-Pointing-Pointer {beta}-phase is identified as rod-like structure embedded in {alpha} matrix and platelets. Black-Right-Pointing-Pointer Phase transformation sequence is discussed as per thermal history and microstructures.

36 MATERIALS SCIENCE↗

Effects of LPSO/α-Mg interfaces on dynamic recrystallization behavior of Mg96.5Gd2.5Zn1 alloy

Highlights: • The effects of LPSO/α-Mg interfaces on the dynamic recrystallization (DRX) behavior of Mg{sub 96.5}Gd{sub 2.5}Zn{sub 1} (at.%) alloy during indirect extrusion at 350 °C were investigated. • The LPSO/α-Mg interfaces in Mg{sub 96.5}Gd{sub 2.5}Zn{sub 1} alloy appeared as two groups, including the basal and non-basal LPSO/α-Mg interfaces, which have various effects on the DRX behavior of Mg{sub 96.5}Gd{sub 2.5}Zn{sub 1} alloy. • Compared with the basal LPSO/α-Mg interfaces, DRX grains are preferentially nucleated near the non-basal LPSO/α-Mg interfaces where there is higher V{sub GROD} and lower required energy E{sub s} for the DRX nucleation. - Abstract: Mg-Gd-Zn alloy, which contains a long period stacking ordered (LPSO) structure, has the potential to become a high-strength Mg alloy within the automotive and aerospace industries. Two types of LPSO/α-Mg interfaces in Mg{sub 96.5}Gd{sub 2.5}Zn{sub 1} (at.%) alloy were characterized, namely, basal and non-basal LPSO/α-Mg interfaces. The effects of LPSO/α-Mg interfaces on the dynamic recrystallization (DRX) behavior during indirect extrusion at 350 °C were investigated. The grain reference orientation deviation (GROD) value (V{sub GROD}), derived from EBSD, could qualitatively characterize the dislocation density within a grain and determine the presence of DRX grain nucleation. The results suggested that the areas around non-basal LPSO/α-Mg interfaces always have higher V{sub GROD} than do basal LPSO/α-Mg interfaces. In addition, the stored energy (E{sub s}) required for DRX nucleation on the non-basal LPSO/α-Mg interface is lower than that on the basal LPSO/α-Mg interface. This is a result of the flat, sharp basal LPSO/α-Mg interface compared to the faceted non-basal LPSO/α-Mg interface. Regardless of whether the LPSO structure/α-Mg matrix interface is coherent or not, non-basal LPSO/α-Mg interfaces are favorable nucleation sites for DRX grains due to the higher V{sub GROD} and lower required energy E{sub s}.

36 MATERIALS SCIENCE↗

Automated Computational Thermochemistry for Butane Oxidation: A Prelude to Predictive Automated Combustion Kinetics

arge-scale implementation of high level computational theoretical chemical kinetics offers the prospect for dramatically improving the fidelity of combustion chemical modeling. As a first step toward this goal, we developed a procedure for automatically generating the thermochemical data for combustion of an arbitrary fuel. The procedure begins by producing a list of combustion relevant species from a specification of the fuel and combustion conditions of interest. Then, for each element in the list of species, the procedure determines an internal coordinate z-matrix description of its structure, the optimal torsional configuration via Monte Carlo sampling, key rovibrational properties for that optimal geometry (including anharmonic corrections from torsional mappings and/or vibrational perturbation theory), and high level estimates of the electronic and zero-point energies via arbitrarily defined composite methods. This dataset is then converted first to partition functions, then to thermodynamic properties, and finally to NASA polynomial representations of the data. The end product is an automatically generated database of electronic structure results and thermochemical data including representations in a format appropriate for combustion simulations. The utility and functioning of this predictive automated computational thermochemistry (PACT) software package is illustrated through application to the automated generation of thermochemical data for the combustion of n-butane. Butane is chosen for this demonstration as its species list is of reasonably manageable size for debugging level computations, while still presenting most of the key challenges that need to be surmounted in the consideration of larger fuels. Furthermore, its low temperature chemistry is representative of that oc-curring with larger alkanes.

Keceli, Murat↗

Tissue-specific directionality of cellulose synthase complex movement inferred from cellulose microfibril polarity in secondary cell walls of Arabidopsis

In plant cells, cellulose synthase complexes (CSCs) are nanoscale machines that synthesize and extrude crystalline cellulose microfibrils (CMFs) into the apoplast where CMFs are assembled with other matrix polymers into specific structures. We report the tissue-specific directionality of CSC movements of the xylem and interfascicular fiber walls of Arabidopsis stems, inferred from the polarity of CMFs determined using vibrational sum frequency generation spectroscopy. CMFs in xylems are deposited in an unidirectionally biased pattern with their alignment axes tilted about 25° off the stem axis, while interfascicular fibers are bidirectional and highly aligned along the longitudinal axis of the stem. These structures are compatible with the design of fiber-reinforced composites for tubular conduit and support pillar, respectively, suggesting that during cell development, CSC movement is regulated to produce wall structures optimized for cell-specific functions.

59 BASIC BIOLOGICAL SCIENCES↗

On the general constraints in single qubit quantum process tomography

In this study, we briefly review single-qubit quantum process tomography for trace-preserving and nontrace-preserving processes, and derive explicit forms of the general constraints for fitting experimental data. These forms provide additional insight into the structure of the process matrix. We illustrate this with several examples, including a discussion of qubit leakage error models and the intuition which can be gained from their process matrices.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Use of Small Angle Neutron Scattering to Study Various Properties of Wool and Mohair Fibres

To maintain a competitive edge in the wool and mohair industry, a detailed knowledge and understanding of the properties of wool fibres is essential. Standard techniques are used to determine fibre diameter, length and strength; however, properties such as hydroscopicity, lustre and changes in fibre structure following chemical or mechanical treatment are not so well understood. The unique capabilities of small angle neutron scattering to study changes in the supermolecular structure of wool fibres, particularly at the level of the microfibril-matrix complex, have been used to provide previously unknown features of the fibres. The results of these studies are presented.

36 MATERIALS SCIENCE↗

Efficient double beta decay nuclear matrix elements computations

We have developed a shell model code for the accurate computation of the two-body matrix elements of the transition operators involved in the neutrinoless double beta decay. This code features coupled cluster method short-range correlations with Jastrow-like functions, finite nucleon size effect and higher order nucleon current corrections. We present the results obtained for {sup 48}Ca and {sup 82}Se, then we compare them with other results in the literature. In the case of {sup 48}Ca, we also study the contributions of the included effects and find good agreement with other published results.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

The influence of self-assembly behavior of nanoparticles on the dielectric polymer composites

To clearify the influence of the distribution of the conductive nanoparticles on the dielectric properties of the corresponding polymer composites, the microstructure and dielectric character of the composites based on the oleic acid modified ferroferric oxide and polyvinylidene fluoride (PVDF) polymer have been studied experimentally. It is found that these composites exhibit a normal percolative phase transition over the filler content from insulator to conductor, consistent with the classical percolation theory. However, when the percentage of fillers is at a certain value which is below the percolation threshold, these nanoparticles can assemble into a special porous structure in the PVDF matrix, associated with the enhancement of dielectric constant at low frequency. In addition, the controllable dispersion of conducting nanoparticles in a polymer matrix can prevent premature agglomeration at low filling fractions and avoid the appearance of anomalously early percolation. Therefore, the self-assembly behavior of nanoparticles can be beneficial to preparation of the high dielectric constant and low loss composites for the application of electric energy storage.

36 MATERIALS SCIENCE↗

Simulation of femtosecond “double-slit” experiments for a chromophore in a dissipative environment

We performed simulations of the prototypical femtosecond “double-slit” experiment with strong pulsed laser fields for a chromophore in solution. The chromophore is modeled as a system with two electronic levels and a single Franck-Condon active underdamped vibrational mode. All other (intra- and inter-molecular) vibrational modes are accounted for as a thermal bath. The system-bath coupling is treated in a computationally accurate manner using the hierarchy equations of motion approach. The double-slit signal is evaluated numerically exactly without invoking perturbation theory in the matter-field interaction. We show that the strong-pulse double-slit signal consists of a superposition of N-wave-mixing (N = 2, 4, 6…) responses and can be split into population and coherence contributions. The former reveals the dynamics of vibrational wave packets in the ground state and the excited electronic state of the chromophore, while the latter contains information on the dephasing of electronic coherences of the chromophore density matrix. We studied the influence of heat baths with different coupling strengths and memories on the double-slit signal. Our results show that the double-slit experiment performed with strong (nonperturbative) pulses yields substantially more information on the photoinduced dynamics of the chromophore than the weak-pulse experiment, in particular, if the bath-induced dephasings are fast.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Study of spin-polaron formation in 1D systems

We study numerically the formation of spin-polarons in low-dimensional systems. We consider a ferromagnetic Kondo lattice model with Hund coupling J{sub H} and localized spins interacting antiferromagnetically with coupling constant J. We investigate the ground state phase diagram as a function of the exchange couplings J{sub H} and J and as a function of the band filling, since it has been observed that doping either on the ferromagnetic or antiferromagnetic regime lead to formation of magnetic domains [1]. We explore the quasi-particle formation and phase separation using the density-matrix renormalization group method, which is a highly efficient method to investigate quasi-one-dimensional strongly correlated systems.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Sulfur vacancies in photorefractive Sn{sub 2}P{sub 2}S{sub 6} crystals

A photoinduced electron paramagnetic resonance (EPR) spectrum in single crystals of Sn{sub 2}P{sub 2}S{sub 6} (SPS) is assigned to an electron trapped at a sulfur vacancy. These vacancies are unintentionally present in undoped SPS crystals and are expected to play an important role in the photorefractive behavior of the material. Nonparamagnetic sulfur vacancies are formed during the initial growth of the crystal. Subsequent illumination below 100 K with 442 nm laser light easily converts these vacancies to EPR-active defects. The resulting S = 1/2 spectrum shows well-resolved and nearly isotropic hyperfine interactions with two P ions and two Sn ions. Partially resolved interactions with four additional neighboring Sn ions are also observed. Principal values of the g matrix are 1.9700, 1.8946, and 1.9006, with the corresponding principal axes along the a, b, and c directions in the crystal. The isotropic parts of the two primary {sup 31}P hyperfine interactions are 19.5 and 32.6 MHz and the isotropic parts of the two primary Sn hyperfine interactions are 860 and 1320 MHz (the latter values are each an average for {sup 117}Sn and {sup 119}Sn). These hyperfine results suggest that singly ionized sulfur vacancies have a diffuse wave function in SPS crystals, and thus are shallow donors. Before illumination, sulfur vacancies are in the doubly ionized charge state because of compensation by unidentified acceptors. They then trap an electron during illumination. The EPR spectrum from the sulfur vacancy is destroyed when a crystal is heated above 120 K in the dark and reappears when the crystal is illuminated again at low temperature.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Quantitative estimation of localization errors of 3d transition metal pseudopotentials in diffusion Monte Carlo

The necessarily approximate evaluation of non-local pseudopotentials in diffusion Monte Carlo (DMC) introduces localization errors. In this paper, we estimate these errors for two families of non-local pseudopotentials for the first-row transition metal atoms Sc–Zn using an extrapolation scheme and multideterminant wavefunctions. Sensitivities of the error in the DMC energies to the Jastrow factor are used to estimate the quality of two sets of pseudopotentials with respect to locality error reduction. The locality approximation and T-moves scheme are also compared for accuracy of total energies. After estimating the removal of the locality and T-moves errors, we present the range of fixed-node energies between a single determinant description and a full valence multideterminant complete active space expansion. The results for these pseudopotentials agree with previous findings that the locality approximation is less sensitive to changes in the Jastrow than T-moves yielding more accurate total energies, however not necessarily more accurate energy differences. For both the locality approximation and T-moves, we find decreasing Jastrow sensitivity moving left to right across the series Sc–Zn. The recently generated pseudopotentials of Krogel et al. reduce the magnitude of the locality error compared with the pseudopotentials of Burkatzki et al. by an average estimated 40% using the locality approximation. The estimated locality error is equivalent for both sets of pseudopotentials when T-moves is used. Finally, for the Sc–Zn atomic series with these pseudopotentials, and using up to three-body Jastrow factors, our results suggest that the fixed-node error is dominant over the locality error when a single determinant is used.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Calculation of spin–orbit couplings using RASCI spinless one-particle density matrices: Theory and applications

Here we present the formalism and implementation for calculations of spin–orbit couplings (SOCs) using the Breit–Pauli Hamiltonian and non-relativistic wave functions described by the restricted active space configuration interaction (RASCI) method with general excitation operators of spin-conserving spin-flipping, ionizing, and electron-attaching types. The implementation is based on the application of the Wigner–Eckart theorem within the spin space, which enables the calculation of the entire SOC matrix based on the explicit calculation of just one transition between the two spin multiplets. Numeric results for a diverse set of atoms and molecules highlight the importance of a balanced treatment of correlation and adequate basis sets and illustrate the overall robust performance of RASCI SOCs. The new implementation is a useful addition to the methodological toolkit for studying spin-forbidden processes and molecular magnetism.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗