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NASA NTRS2000

GeoSAR: A Radar Terrain Mapping System for the New Millennium

GeoSAR Geographic Synthetic Aperture Radar) is a new 3 year effort to build a unique, dual-frequency, airborne Interferometric SAR for mapping of terrain. This is being pursued via a Consortium of the Jet Propulsion Laboratory (JPL), Calgis, Inc., and the California Department of Conservation. The airborne portion of this system will operate on a Calgis Gulfstream-II aircraft outfitted with P- and X-band Interferometric SARs. The ground portions of this system will be a suite of Flight Planning Software, an IFSAR Processor and a Radar-GIS Workstation. The airborne P-band and X-band radars will be constructed by JPL with the goal of obtaining foliage penetration at the longer P-band wavelengths. The P-band and X-band radar will operate at frequencies of 350 Mhz and 9.71 Ghz with bandwidths of either 80 or 160 Mhz. The airborne radars will be complemented with airborne laser system for measuring antenna positions. Aircraft flight lines and radar operating instructions will be computed with the Flight Planning Software The ground processing will be a two-step step process. First, the raw radar data will be processed into radar images and interferometer derived Digital Elevation Models (DEMs). Second, these radar images and DEMs will be processed with a Radar GIS Workstation which performs processes such as Projection Transformations, Registration, Geometric Adjustment, Mosaicking, Merging and Database Management. JPL will construct the IFSAR Processor and Calgis, Inc. will construct the Radar GIS Workstation. The GeoSAR Project was underway in November 1996 with a goal of having the radars and laser systems fully integrated onto the Calgis Gulfstream-II aircraft in early 1999. Then, Engineering Checkout and Calibration-Characterization Flights will be conducted through November 1999. The system will be completed at the end of 1999 and ready for routine operations in the year 2000.

Thompson, Thomas↗

DOE OSTI2025

Host cell and viral protease targets of human SERPINs identified by in silico docking

Serine protease inhibitors (SERPINs) are involved in various physiological processes and diseases, such as inflammation, cancer metastasis, and neurodegeneration. Their role in viral infections is poorly understood, as their expression patterns during infection and the range of proteases they target have yet to be fully characterized. Here, we show widespread expression of human SERPINs in response to respiratory virus infections, both in bronchioalveolar lavages from COVID-19 patients and in polarized human airway epithelial cultures. Using in silico docking of 10 SERPINs to 48 host proteases, we confirm known targets and predict new interactions. Protease activity assays validated selected interactions, confirming the newly predicted host targets for PAI-1 (SERPINE1) and PAI-2 (SERPINB2). PAI-1 inhibits cathepsin L, essential for SARS-CoV-2 maturation, and suppresses multi-cycle replication of both ancestral SARS-CoV-2 WA-1 and its variant Omicron BA.1. In addition, we identify PAI-2 as an antiviral SERPIN that reduces infectivity of human adenovirus 5 by directly inhibiting the adenoviral protease. Our study leverages in silico docking using full-length 3D protein structures to uncover new SERPIN targets, offering a range of candidate targets for therapeutic interventions.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Non-Ionizing Millimeter Waves Non-Thermal Radiation of Saccharomyces cerevisiae—Insights and Interactions

Non-ionizing millimeter-waves (MMW) interact with cells in a variety of ways. Here the inhibited cell division effect was investigated using 85–105 GHz MMW irradiation within the International Commission on Non-Ionizing Radiation Protection (ICNIRP) non-thermal 20 mW/cm 2 safety standards. Irradiation using a power density of about 1.0 mW/cm 2 SAR over 5–6 h on 50 cells/μL samples of Saccharomyces cerevisiae model organism resulted in 62% growth rate reduction compared to the control (sham). The effect was specific for 85–105 GHz range and was energy- and cell density-dependent. Irradiation of wild type and Δrad52 (DNA damage repair gene) deleted cells presented no differences of colony growth profiles indicating non-thermal MMW treatment does not cause permanent genetic alterations. Dose versus response relations studied using a standard horn antenna (~1.0 mW/cm 2 ) and compared to that of a compact waveguide (17.17 mW/cm 2 ) for increased power delivery resulted in complete termination of cell division via non-thermal processes supported by temperature rise measurements. We have shown that non-thermal MMW radiation has potential for future use in treatment of yeast related diseases and other targeted biomedical outcomes.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1975

Earth resources shuttle imaging radar

A report is presented on a preliminary design of a Synthetic Array Radar (SAR) intended for experimental use with the space shuttle program. The radar is called Earth Resources Shuttle Imaging Radar (ERSIR). Its primary purpose is to determine the usefulness of SAR in monitoring and managing earth resources. The design of the ERSIR, along with tradeoffs made during its evolution is discussed. The ERSIR consists of a flight sensor for collecting the raw radar data and a ground sensor used both for reducing these radar data to images and for extracting earth resources information from the data. The flight sensor consists of two high powered coherent, pulse radars, one that operates at L and the other at X-band. Radar data, recorded on tape can be either transmitted via a digital data link to a ground terminal or the tape can be delivered to the ground station after the shuttle lands. A description of data processing equipment and display devices is given.

Source record↗

NASA NTRS1992

Sequential deformation of plains along Tessera boundaries on Venus: Evidence from Alpha Regio

Tesserae are regions of elevated terrain characterized by two or more sets of ridges and grooves that intersect orthogonally. Tesserae comprise 15-20 percent of the surface of Venus, but the nature of their formation and evolution is not well understood; processes proposed to account for their characteristics are many and varied. Two types of tessera boundaries have been described: type 1 are generally embayed by plains; and type 2 boundaries are characterized by being linear at the 100-km scale and often associated with steep scarps or tectonic features. Margins such as the western edge of Alpha have been described as type 2. Some of the tessera have boundaries that display deformation of both the edge of the tessera and the adjoining plains. This study focuses on the western edge of Alpha Regio in an effort to characterize on occurrence of this type of boundary and assess the implications of the style in general. Using Magellan SAR imagery, lineament lengths, orientations, and spacing were measured for ten 50 x 60 km areas spanning 500 km of the western boundary. Structural characteristics and orientations were compared to stratigraphic units in order to assess the sequence and style of deformation.

Gilmore, M. S.↗

DOE OSTI2021

3D-Scaffold: A Deep Learning Framework to Generate 3D Coordinates of Drug-like Molecules with Desired Scaffolds

The prerequisite of therapeutic drug design is to identify novel molecules with desired biophysical and biochemical properties. Deep generative models have demonstrated their ability to find such molecules by exploring a huge chemical space efficiently. An effective way to obtain molecules with desired target properties is the preservation of critical scaffolds in the generation process. To this end, we propose a domain aware generative framework called 3D-Scaffold that takes 3D coordinates of a desired scaffold as an input and generates 3D coordinates of novel therapeutic candidates as an output while always preserving the desired scaffolds in generated structures. We show that our framework generates predominantly valid, unique, novel, and experimentally synthesizable molecules that have drug-like properties similar to the molecules in the training set. Using domain specific datasets, we generate covalent and non-covalent antiviral inhibitors. Therefore, to measure the success of our framework in generating therapeutic candidates, generated structures were subjected to high throughput virtual screening via docking simulations, which shows favorable interaction against SARS-CoV-2 main protease and non-structural protein endoribonuclease (NSP15) targets. Most importantly, our model performs well with relatively small volumes of training data and generalizes to new scaffolds, making it applicable to other domain.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

NASA NTRS1991

Development of a prototype spatial information processing system for hydrologic research

Significant advances have been made in the last decade in the areas of Geographic Information Systems (GIS) and spatial analysis technology, both in hardware and software. Science user requirements are so problem specific that currently no single system can satisfy all of the needs. The work presented here forms part of a conceptual framework for an all-encompassing science-user workstation system. While definition and development of the system as a whole will take several years, it is intended that small scale projects such as the current work will address some of the more short term needs. Such projects can provide a quick mechanism to integrate tools into the workstation environment forming a larger, more complete hydrologic analysis platform. Described here are two components that are very important to the practical use of remote sensing and digital map data in hydrology. Described here is a graph-theoretic technique to rasterize elevation contour maps. Also described is a system to manipulate synthetic aperture radar (SAR) data files and extract soil moisture data.

Sircar, Jayanta K.↗

NASA NTRS2010

Measurement and Mitigation of the Ionosphere in L-Band Interferometric SAR Data

Satellite-based repeat-pass Interferometric Synthetic Aperture Radar (InSAR) provides a synoptic high spatial resolution perspective of Earth's changing surface, permitting one to view large areas quickly and efficiently. By measuring relative phase change from one observation to the next on a pixel-by-pixel basis, maps of deformation and change can be derived. Variability of the atmosphere and the ionosphere leads to phase/time delays that are present in the data that can mask many of the subtle deformation signatures of interest, so methods for mitigation of these effects are important. Many of these effects have been observed in existing ALOS PALSAR data, and studies are underway to characterize and mitigate the ionosphere using these data. Since the ionosphere is a dispersive medium, it is possible in principle distinguish the ionospheric signatures from the non-dispersive effects of deformation and the atmosphere. In this paper, we describe a method for mapping the ionosphere in InSAR data based on a multi-frequency split-spectrum processing technique.

Rosen, Paul A.↗

DOE OSTI2023

Building a Computational and Experimental Rapid Response Pipeline to Counter the Coronavirus Disease 2019 Outbreak and Emerging Biothreats

The LDRD ER “Building a Computational and Experimental Rapid Response Pipeline to Counter the Coronavirus Disease 2019 Outbreak and Emerging Biothreats” was conceived to address a need for rapid, scalable, evaluation of computationally designed therapeutic or prophylactic antibodies and vaccine antigens, two important classes of protein medical countermeasure (MCM). This was done in complement to a computationally driven LDRD 20ERD032 “Active Learning for Rapid Design of Vaccines and Antibodies.” Natural antibodies and antigens are often insufficiently broad or robust across different pathogens and their variants. Leveraging a collaboration of simulation driven machine learning, structural expertise, and high-throughput characterization of candidate antibodies, we successfully re-targeted three different anti-SARS-CoV-1 antibodies to neutralize SARS-CoV-2 in vitro. Our antibody design work reached its most important stage in rapid response to the emergence of the Omicron variant of concern (VOC) in late 2021. In a matter of weeks, we computationally designed derivative antibodies of COV2-2130, one of two antibodies from Vanderbilt that form the basis of the AstraZeneca Evusheld prophylactic drug product. This drug product suffers a serious loss of efficacy against Omicron BA.1 and BA.1.1, the first Omicron strains. Our designs were successful, including a pair of designs which provide potent neutralization of not only Omicron BA.1 and BA.1.1, but also the earlier Delta variant, and subsequent Omicron strains including BA.2, BA.4, BA.5, and BA.2.75, demonstrating that our multi-target design process can, by its nature, produce robust antibody designs that strictly improve over the parental antibody. These results, recognized by a 2022 Director’s Science and Technology award, have enabled the follow-on GUIDE program, to commence in FY23.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1999

Calibration of the Geosar Dual Frequency Interferometric SAR

GeoSAR is an airborne, interferometric Synthetic Aperture Radar (INSAR) system for terrain mapping, currently under development by a consortium including NASA's Jet Propulsion Laboratory (JPL), Calgis, Inc., and the California Department of Conservation (CalDOC) with funding provided by the Topographic Engineering Center (TEC) of the U.S. Army Corps of Engineers and the Defense Advanced Research Projects Agency (DARPA). The radar simultaneously maps swaths on both sides of the aircraft at two frequencies, X-Band and P-Band. For the P-Band system, data is collected for two across track interferometric baselines and at the crossed polarization. The aircraft position and attitude are measured using two Honeywell Embedded GPS Inertial Navigation Units (EGI) and an Ashtech Z12 GPS receiver. The mechanical orientation and position of the antennas are actively measured using a Laser Baseline Metrology System (LBMS). In the GeoSAR motion measurement software, these data are optimally combined with data from a nearby ground station using Ashtech PNAV software to produce the position, orientation, and baseline information are used to process the dual frequency radar data. Proper calibration of the GeoSAR system is essential to obtaining digital elevation models (DEMS) with the required sub-meter level planimetric and vertical accuracies. Calibration begins with the determination of the yaw and pitch biases for the two EGI units. Common range delays are determined for each mode, along with differential time and phase delays between channels. Because the antennas are measured by the LBMS, baseline calibration consists primarily of measuring a constant offset between mechanical center and the electrical phase center of the antennas. A phase screen, an offset to the interferometric phase difference which is a function of absolute phase, is applied to the interferometric data to compensate for multipath and leakage. Calibration parameters are calculated for each of the ten processing modes, each of the operational bandwidths (80 and 160 MHZ), and each aircraft altitude. In this talk we will discuss the layout calibration sites, the synthesis of data from multiple flights to improve the calibration, methods for determining time and phase delays, and techniques for determining radiometric and polarimetric quantities. We will describe how calibration quantities are incorporated into the processor and pre-processor. We will demonstrate our techniques applied to GeoSar data and assess the stability and accuracy of the calibration. This will be compared to the modeled performance determined from calibrating the output of a point target simulator. The details of baseline determination and phase screen calculation are covered in related talks.

Chapine, Elaine↗

DOE OSTI2024

A Cryogenic readout integrated circuit with analog pile-up and in-Pixel ADC for high frame rate Skipper CCD-in-CMOS Sensors

The Skipper CCD-in-CMOS Parallel Read-Out Circuit V2 (SPROCKET2) is designed to enable high frame rate readout of Skipper CCD-in-CMOS image sensors. The SPROCKET2 pixel is fabricated in a 65 nm CMOS process and occupies a 60$\mu$m $\times$ 60$\mu$m footprint. SPROCKET2 is intended to be heterogeneously integrated with a pixelated Skipper CCD-in-CMOS sensor, such that one readout pixel is connected to a multiplexed array of 16 active image sensor pixels, to match their spatial geometry. Our design benefits from the Skipper CCD-in-CMOS sensor's non-destructive readout capability to achieve exceptionally low noise through multi-sampling and averaging while optimizing for total power consumption. The pixel readout utilizes correlated double sampling to minimize 1/f noise and includes "pile-up" of ten successive samples in the analog domain before digitizing at a rate of 66.7 ksps. Measurement results of in-pixel serial SAR ADC show DNL and INL of ~0. 44 LSB and 0.58 LBS respectively. A large area array of 20,000 SPROCKET2 ADC pixels (multiplexed 1:16 to 320,000 sensor pixels) is currently under test. By reading out data over a 10 Gbps optical link, this pixel design enables a frame rate of $\sim$ 4 kfps for large sensing areas with minimal sensing deadtime. In the highest gain mode, the pixelated ADC has an input-referred resolution of 10$\mu$V with a simulated power consumption of 50$\mu$W. The pixel operates with constant current draw to minimize power-rail crosstalk.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

NASA NTRS1996

The NASA/JPL Airborne Synthetic Aperture Radar System

The NASA/JPL airborne SAR (AIRSAR) system operates in the fully polarimetric mode at P-, L- and C-band simultaneously or in the interferometric mode in both L- and C-band simultaneously. The system became operational in late 1987 and flew its first mission aboard a DC-8 aircraft operated by NASA's Ames Research Center in Mountain View, California. Since then, the AIRSAR has flown missions every year and acquired images in North, Central and South America, Europe and Australia. In this paper, we will briefly describe the instrument characteristics, the evolution of the various radar modes, the instrument performance, and improvement in the knowledge of the positioning and attitude information of the radar. In addition, we will summarize the progress of the data processing effort especially in the interferometry processing. Finally, we will address the issue of processing and calibrating the cross-track interferometry (XTI) data.

Kim, Yun-Jin↗

NASA NTRS2005

NASA Tech Briefs, May 2005

Topics covered include: Fastener Starter; Multifunctional Deployment Hinges Rigidified by Ultraviolet; Temperature-Controlled Clamping and Releasing Mechanism; Long-Range Emergency Preemption of Traffic Lights; High-Efficiency Microwave Power Amplifier; Improvements of ModalMax High-Fidelity Piezoelectric Audio Device; Alumina or Semiconductor Ribbon Waveguides at 30 to 1,000 GHz; HEMT Frequency Doubler with Output at 300 GHz; Single-Chip FPGA Azimuth Pre-Filter for SAR; Autonomous Navigation by a Mobile Robot; Software Would Largely Automate Design of Kalman Filter; Predicting Flows of Rarefied Gases; Centralized Planning for Multiple Exploratory Robots; Electronic Router; Piezo-Operated Shutter Mechanism Moves 1.5 cm; Two SMA-Actuated Miniature Mechanisms; Vortobots; Ultrasonic/Sonic Jackhammer; Removing Pathogens Using Nano-Ceramic-Fiber Filters; Satellite-Derived Management Zones; Digital Equivalent Data System for XRF Labeling of Objects; Identifying Objects via Encased X-Ray-Fluorescent Materials - the Bar Code Inside; Vacuum Attachment for XRF Scanner; Simultaneous Conoscopic Holography and Raman Spectroscopy; Adding GaAs Monolayers to InAs Quantum-Dot Lasers on (001) InP; Vibrating Optical Fibers to Make Laser Speckle Disappear; Adaptive Filtering Using Recurrent Neural Networks; and Applying Standard Interfaces to a Process-Control Language.

Source record↗

DOE OSTI2024

Enhancing Docking Accuracy with PECAN2, a 3D Atomic Neural Network Trained without Co-Complex Crystal Structures

Decades of drug development research have explored a vast chemical space for highly active compounds. The exponential growth of virtual libraries enables easy access to billions of synthesizable molecules. Computational modeling, particularly molecular docking, utilizes physics-based calculations to prioritize molecules for synthesis and testing. Nevertheless, the molecular docking process often yields docking poses with favorable scores that prove to be inaccurate with experimental testing. To address these issues, several approaches using machine learning (ML) have been proposed to filter incorrect poses based on the crystal structures. However, most of the methods are limited by the availability of structure data. Here, we propose a new pose classification approach, PECAN2 (Pose Classification with 3D Atomic Network 2), without the need for crystal structures, based on a 3D atomic neural network with Point Cloud Network (PCN). The new approach uses the correlation between docking scores and experimental data to assign labels, instead of relying on the crystal structures. We validate the proposed classifier on multiple datasets including human mu, delta, and kappa opioid receptors and SARS-CoV-2 Mpro. Our results demonstrate that leveraging the correlation between docking scores and experimental data alone enhances molecular docking performance by filtering out false positives and false negatives.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

NASA NTRS2000

Fusion of AIRSAR and TM Data for Parameter Classification and Estimation in Dense and Hilly Forests

The expanded remotely sensed data space consisting of coincident radar backscatter and optical reflectance data provides for a more complete description of the Earth surface. This is especially useful where many parameters are needed to describe a certain scene, such as in the presence of dense and complex-structured vegetation or where there is considerable underlying topography. The goal of this paper is to use a combination of radar and optical data to develop a methodology for parameter classification for dense and hilly forests, and further, class-specific parameter estimation. The area to be used in this study is the H. J. Andrews Forest in Oregon, one of the Long-Term Ecological Research (LTER) sites in the US. This area consists of various dense old-growth conifer stands, and contains significant topographic relief. The Andrews forest has been the subject of many ecological studies over several decades, resulting in an abundance of ground measurements. Recently, biomass and leaf-area index (LAI) values for approximately 30 reference stands have also become available which span a large range of those parameters. The remote sensing data types to be used are the C-, L-, and P-band polarimetric radar data from the JPL airborne SAR (AIRSAR), the C-band single-polarization data from the JPL topographic SAR (TOPSAR), and the Thematic Mapper (TM) data from Landsat, all acquired in late April 1998. The total number of useful independent data channels from the AIRSAR is 15 (three frequencies, each with three unique polarizations and amplitude and phase of the like-polarized correlation), from the TOPSAR is 2 (amplitude and phase of the interferometric correlation), and from the TM is 6 (the thermal band is not used). The range pixel spacing of the AIRSAR is 3.3m for C- and L-bands and 6.6m for P-band. The TOPSAR pixel spacing is 10m, and the TM pixel size is 30m. To achieve parameter classification, first a number of parameters are defined which are of interest to ecologists for forest process modeling. These parameters include total biomass, leaf biomass, LAI, and tree height. The remote sensing data from radar and TM are used to formulate a multivariate analysis problem given the ground measurements of the parameters. Each class of each parameter is defined by a probability density function (pdf), the spread of which defines the range of that class. High classification accuracy results from situations in which little overlap occurs between pdfs. Classification results provide the basis for the future work of class-specific parameter estimation using radar and optical data. This work was performed in part by the Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, and in part by the NASA Ames Research Center, Moffett Field, CA, both under contract from the National Aeronautics and Space Administration.

Moghaddam, Mahta↗

NASA NTRS2015

Measurements of Integration Gain for the Cospas-Sarsat System from Geosynchronous Satellites

The GOES-R satellite is the first satellite to use a standard straight bent pipe transponder with no on-board re-modulation to support Search and Rescue (SAR) operations. Here, we report on the link measurements with a high fidelity satellite transponder simulator made up of satellite EDU (Engineering Design Units) components using an uplink from a beacon simulator and received by a GEOLUT (GEOsynchronous satellite Local User Terminal). We also report on the first ever measurements showing the performance gain obtained by the signal integration performed by the GEOLUT. In addition, a simulator made of commercially available off-the-shelf components assembled to develop the test plan was found to perform very close to the high fidelity simulator. In this paper, we describe what message integration is, how it is implemented in the particular satellite receiving station model used for this tests, and show the measured improvement in message decoding due to this integration process. These are the first tests to quantify the integration gain and are the first tests on the new SARSAT standard for the bent pipe (no onboard re-modulation) repeater used in GOES-R. An inexpensive satellite simulator to run test scripts built from off the shelf components was also found to have the same performance as a high fidelity simulator using actual satellite EDUs.

Klein-Lebbink, Elizabeth↗

NASA NTRS2015

Measurements of Integration Gain for the Cospas-Sarsat System from Geosynchronous Satellites

Klein-Lebbink, Elizabeth↗

NASA NTRS1994

Backscatter characteristics of the winter ice cover in the Beaufort Sea

The microwave backscatter statistics of the sea ice cover in the winter Beaufort Sea are characterized using C band synthetic aperture radar (SAR) data collected by the European Earth Resources Satellite 1. Sea ice backscatter signatures were sampled from SAR image data collected during the winter of 1991-1992 and winter of 1992-1993. The spatial and temporal variabilities of the backscatter signatures of different ice types are discussed. The results show considerable seasonal stability of the backscatter signature of multiyear ice as well as of first-year ice. Small amplitude regional variations of the multiyear ice backscatter can be observed. Consistent contrast between multiyear ice and first-year ice is maintained throughout the season. The highest radiometric variability is observed in sea ice in leads. On the basis of these observations the backscatter from the principal ice types (multiyear and first-year) are consistent with scatterometer observations and can be easily identified under winter conditions. Correlations of the regional variations of multiyear ice signatures to physical processes are suggested.

Kwok, Ronald↗