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DOE OSTI2020

Simple Analysis of Primary and Secondary Bile Salt Hydrolysis in Mouse and Human Gut Microbiome Samples by Using Fluorogenic Substrates

Animals produce bile to maximize absorption of lipophilic nutrients in the gut. The physical properties of bile are largely dictated by amphipathic bile salt molecules, which also act as signaling molecules that bind host receptors and modulate physiological processes. Upon excretion of bile salts into the gut, the gut microbiome can create metabolites that have modified signaling capabilities. The category and magnitude of bile salt metabolism can affect the host either positively or negatively. A key modification is bile salt hydrolysis, which is a prerequisite step for all additional microbial modification. Here, we have synthesized five different fluorogenic bile salts that report on hydrolysis activity using a simple, continuous assay. We profile activity in both murine and human fecal samples. Our data demonstrate that most gut microbiomes have the highest capacity for hydrolysis of host-produced bile salts, but some microbially modified bile salts also display significant turnover.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2022

Accretion disc sizes from continuum reverberation mapping of AGN selected from the ZTF survey

ABSTRACT We present the accretion disc-size estimates for a sample of 19 active galactic nuclei (AGNs) using the optical g-, r-, and i-band light curves obtained from the Zwicky Transient Facility survey. All the AGNs have reliable supermassive black hole (SMBH) mass estimates based on previous reverberation mapping measurements. The multiband light curves are cross-correlated, and the reverberation lag is estimated using the Interpolated Cross-Correlation Function method and the Bayesian method using the javelin code. As expected from the disc-reprocessing arguments, the g − r band lags are shorter than the g − i band lags for this sample. The interband lags for all, but five sources, are larger than the sizes predicted from the standard Shakura Sunyaev (SS) analytical model. We fit the light curves directly using a thin disc model implemented through the javelin code to get the accretion disc sizes. The disc sizes obtained using this model are on an average 3.9 times larger than the prediction based on the SS disc model. We find a weak correlation between the disc sizes and the known physical parameters, namely the luminosity and the SMBH mass. In the near future, a large sample of AGNs covering broader ranges of luminosity and SMBH mass from large photometric surveys would be helpful in a better understanding of the structure and physics of the accretion disc.

Jha, Vivek Kumar (ORCID:0000000232776335)↗

NASA NTRS1999

Composition and Origin of Martian Surface Material, Remote Detection of Minerals, and Applications to Astrobiology

Martian surface composition and processes are under study through analysis of spectral, magnetic and chemical data from Mars and analysis of laboratory analog materials. The focus of this study is on potential lander/rover measurements of weathered volcanic tephra and hydrothermal rocks because these samples resulted from processes that may have occurred on Mars. Fine-grained particles from these sources may be responsible for origination of the dust/soil on Mars that is shaping the planet's surface character. Alteration on the surface of Mars likely includes both chemical and physical interactions of soil particles and rock surfaces. Many of the minerals present in hydrothermal samples may be associated with organisms and may be useful as indicators of life or environments supportive of life on Mars. Characterization of the spectroscopic properties in the visible/near-infrared (VIS/NIR) and mid-infrared (IR) regions using reflectance, emittance and Raman, as well as the thermal properties of minerals thought to be present on Mars are being performed in order to identify them remotely. Particular interest is directed toward locating minerals, and hence landing sites, important to Astrobiology.

Bishop, J. L.↗

DOE OSTI2023

Comparison of residual dose rates from MARS and DORIAN simulations with experimental data from the SINBAD database

This benchmarking study aims to compare residual dose rate predictions from the MARS and DORIAN codes with experimental measurements taken from samples irradiated at CERN's CERF facility. The research evaluates the residual dose rates of these samples over varied cooling intervals. Additionally, it delves into the influence of parameter choices, such as specific physics processes and energy thresholds, on the production and transport of particles and their effects on simulation outcomes. While both MARS and DORIAN largely align with experimental findings, discrepancies were observed in the copper sample. This prompted an in-depth examination of the elevated dose rates from MARS.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

NASA NTRS2017

Heating and Thermal Control of Brazing Technique to Break Contamination Path for Potential Mars Sample Return

The potential return of Mars sample material is of great interest to the planetary science community, as it would enable extensive analysis of samples with highly sensitive laboratory instruments. It is important to make sure such a mission concept would not bring any living microbes, which may possibly exist on Mars, back to Earth’s environment. In order to ensure the isolation of Mars microbes from Earth’s Atmosphere, a brazing sealing and sterilizing technique was proposed to break the Mars-to-Earth contamination path. Effectively, heating the brazing zone in high vacuum space and controlling the sample temperature for integrity are key challenges to the implementation of this technique. The break-the-chain procedures for container configurations, which are being considered, were simulated by multi-physics finite element models. Different heating methods including induction and resistive/radiation were evaluated. The temperature profiles of Martian samples in a proposed container structure were predicted. The results show that the sealing and sterilizing process can be controlled such that the samples temperature is maintained below the level that may cause damage, and that the brazing technique is a feasible approach to breaking the contamination path.

Bao, Xiaoqi↗

DOE OSTI2026

Electron-ion equilibration in superheated gold

Electron-ion equilibration dynamics in samples driven into superheated states with multi-eV electron temperatures represent a fundamental process in nonequilibrium physics. A clear picture of the evolving ion temperature is essential for understanding the strength of the electron-ion coupling. However, direct, model-independent measurements of the ion temperature in laser-irradiated samples have remained experimentally elusive. Using inelastic X-ray scattering with meV-resolution in gold samples, the ion response to ultrafast heating by the hot electrons can be resolved, quantifying the electron-ion equilibration dynamics. We report measurements revealing a strongly enhanced energy transfer rate compared to that in weakly excited gold. Moreover, we obtain a quasi-constant electron-ion coupling at the highly elevated electron temperatures. These results place new constraints on electron-ion energy transfer in warm dense matter and establish a path toward quantitative benchmarking of models for nonequilibrium dynamics.

Griffin, Travis D. [Univ. of Nevada, Reno, NV (Uni↗

DOE OSTI2022

Nonlinear quantum interferometric spectroscopy with entangled photon pairs

Here, we develop closed expressions for a time-resolved photon counting signal induced by an entangled photon pair in an interferometric spectroscopy setup. Superoperator expressions in Liouville-space are derived that can account for relaxation and dephasing induced by coupling to a bath. Interferometric setups mix matter and light variables non-trivially, which complicates their interpretation. We provide an intuitive modular framework for this setup that simplifies its description. Based on the separation between the detection stage and the light–matter interaction processes, we show that the pair entanglement time and the interferometric time-variables control the observed physics time scale. Only a few processes contribute in the limiting case of small entanglement time with respect to the sample response, and specific contributions can be singled out.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2020

The CLAS12 forward electromagnetic calorimeter

The CLAS12 Forward Detector includes six independent lead-scintillator electromagnetic sampling calorimeters to provide the primary electron trigger and extend the CLAS12 detection capability to photons and neutrons. Each calorimeter package consists of two modules, the legacy Electromagnetic Calorimeter (EC) previously used in the CLAS detector, and a new pre-shower calorimeter (PCAL) located in front of the EC to extend the total detector radiation length, in order to fully absorb the electromagnetic showers induced by electrons with energies up to 12 GeV. Both calorimeters use a novel triangular hodoscope geometry with stereo readout. The PCAL uses an upgraded design to provide the high spatial resolution necessary for reconstructing π 0 and η decays, and neutrons with high efficiency. Here, this paper treats the design, construction, and calibration of the PCAL and the preliminary combined performance of both detectors.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2020

Chemical Imaging of Fine Mode Atmospheric Particles Collected from a Research Aircraft over Agricultural Fields

Vegetation and crops in agricultural areas are a significant source of both biogenic secondary organic aerosols and of directly emitted primary biological atmospheric particles (PBAPs) composed of plant fragments/debris, fungal spores, pollen, and bacteria among others. Seasonal crop harvesting significantly intensifies regional PBAP emissions and aerosolizes soil organic matter and dust particulates. In this paper, the atmospheric contributions and impact of PBAPs have been insufficiently investigated due to limited real-time observations and ambiguity in their detection by existing measurement techniques. We collected ambient particles on-board an instrumented Beechcraft BE76 Duchess research aircraft flying above actively harvested agriculture fields of corn and soybean crops. In this work, particle samples were analyzed using complementary chemical imaging techniques, including computer-controlled scanning electron microscopy coupled with elemental microanalysis to describe particle-type population and scanning transmission X-ray microscopy to provide quantitative metrics on particle internal heterogeneity. We show the particle-class contribution is consistent between corn and soybean harvesting across altitudes of 100–300 m AGL. The contribution of PBAPs in the size range of 0.15–1.25 μm is estimated to be 10–12% of ~39,000 analyzed particles. Determining viscosity with X-ray microanalysis has shown that the fine-mode organic particles collected are viscous/semisolid (10 2 –10 12 Pa s) while the majority of PBAP fragments are solid (>10 12 Pa s). The observation of submicrometer, solid carbonaceous fragments of biogenic origin has implications for the regional cloud condensation nuclei and ice nuclei budget. Therefore, seasonal harvesting of crops may play an important, yet unrecognized, role in regional cloud formation and climate.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

NASA NTRS1996

Properties of Single Crystalline Semiconducting CoSb3

A study of the thermoelectric properties of the skutterudite compound CoSb3 was carried out on single crystals grown by the Bridgman gradient freeze technique. p- and n-type samples were obtained over a wide range of carrier concentration. Undoped As-grown crystals show p-type conductivity while n-type samples were obtained by addition of Te or Pd. Samples were characterized by x-ray diffractometry, electron microprobe analysis, and density measurements. The physical properties of CoSb3 such as linear thermal expansion coefficient, sound velocity, and Debye temperature were also determined and are presented. Seebeck coefficient, electrical resistivity, thermal conductivity, and Hall effect measurements were performed between room temperature and about 900 K. Exceptionally high Hall mobilities were obtained on p-type samples with a maximum room-temperature Hall mobility of 3300 sq cm/V.s at a carrier concentration of 1 x 10(exp 17)/cc. The results of the transport property measurements are discussed and are in agreement with some recent predictions based on band structure calculations. The potential of CoSb3 for thermoelectric applications is evaluated.

Caillat, T.↗

NASA NTRS1983

The Einstein observatory medium sensitivity survey - The quasars sample

A complete sample of X-ray-selected quasars and Seyfert galaxies extracted from the Einstein Observatory Medium Sensitivity Survey is described, and their physical characteristics are discussed. A Hubble constant of 50 km/s per Mpc and a Friedmann universe with a deceleration parameter of q(0)=0 are assumed throughout the survey, and the sample of X-ray sources was selected according to the following criteria: the significance of the detection exceeds a confidence level of 5 beta; the source is physically unrelated to the target of the IPC observation; and that the source is at a galactic latitude higher than 20 deg. The redshift and optical luminosity distributions of 55 Active Galactic Nuclei (AGNs) detected in the survey are discussed. A number flux relation for the different classes of extragalactic objects are analyzed in detail, using a Maximum Likelihood method and the assumption that the relation can be represented as a power law.

Gioia, I. M.↗

NASA NTRSDate not supplied

The Nature of Extraterrestrial Amino Acids in Carbonaceous Chondrites and Links to Their Parent Bodies

Meteorites and samples returned from asteroids and comets provide an important record of the physical and chemical processes that occurred in the early solar system and represent some of the oldest solid materials currently available for laboratory analyses. The delivery of organic matter by extraterrestrial material to the early Earth could have been an important source of complex prebiotic organic molecules available for the emergence of life. Analyses of primitive carbonaceous chondrites over the last five decades have revealed a major insoluble organic component [1,2], as well as a complex and highly diverse suite of soluble organic molecules of prebiotic importance [3,4] that includes carboxylic acids, N-heterocycles, sugars, amino acids, amines, and many other organic molecules that have not yet been identified [5]. Amino acids continue to be a primary focus of many soluble organic analyses in carbonaceous chondrites because (1) these molecules are essential components of life (as the monomers of proteins), (2) they have structural diversity (multiple possible isomers) that can be used to help constrain formation mechanisms and parent body conditions, and (3) most amino acids identified in carbonaceous chondrites are chiral, a property that can be used to distinguish between amino acids of extraterrestrial and terrestrial origins. The degree of parent body hydrothermal alteration has been shown to have a major influence on the formation and destruction of amino acids in carbonaceous meteorites as observed in the measured abundances and molecular distributions [6]. Aqueous alteration in primitive asteroids could have also led to the preferential enrichment of some left-handed amino acids over their right-handed forms, an astounding discovery that suggests that the origin of life on Earth or elsewhere was biased toward left-handed amino acid homochirality [7,8]. This talk will give an overview of what is known about the amino acid composition of carbonaceous chondrites, present some key unanswered questions, and discuss how the analysis of samples returned from asteroids Ryugu and Bennu will further advance our understanding of parent body chemistry and potential contributions from carbonaceous asteroids to the origin of life on Earth or elsewhere.

Daniel P. Glavin↗

DOE OSTI2020

General approaches for shear-correcting coordinate transformations in Bragg coherent diffraction imaging. Part II

X-ray Bragg coherent diffraction imaging (BCDI) has been demonstrated as a powerful 3D microscopy approach for the investigation of sub-micrometre-scale crystalline particles. The approach is based on the measurement of a series of coherent Bragg diffraction intensity patterns that are numerically inverted to retrieve an image of the spatial distribution of the relative phase and amplitude of the Bragg structure factor of the diffracting sample. This 3D information, which is collected through an angular rotation of the sample, is necessarily obtained in a non-orthogonal frame in Fourier space that must be eventually reconciled. To deal with this, the approach currently favored by practitioners (detailed in Part I) is to perform the entire inversion in conjugate non-orthogonal real- and Fourier-space frames, and to transform the 3D sample image into an orthogonal frame as a post-processing step for result analysis. In this article, which is a direct follow-up of Part I, two different transformation strategies are demonstrated, which enable the entire inversion procedure of the measured data set to be performed in an orthogonal frame. The new approaches described here build mathematical and numerical frameworks that apply to the cases of evenly and non-evenly sampled data along the direction of sample rotation ( i.e. the rocking curve). The value of these methods is that they rely on the experimental geometry, and they incorporate significantly more information about that geometry into the design of the phase-retrieval Fourier transformation than the strategy presented in Part I. Finally, two important outcomes are (1) that the resulting sample image is correctly interpreted in a shear-free frame and (2) physically realistic constraints of BCDI phase retrieval that are difficult to implement with current methods are easily incorporated. Computing scripts are also given to aid readers in the implementation of the proposed formalisms.

36 MATERIALS SCIENCE↗

DOE OSTI2021

Prospects for quarkonium studies at the high-luminosity LHC

In this work, prospects for quarkonium-production studies accessible during the upcoming high-luminosity phases of the CERN Large Hadron Collider operation after 2021 are reviewed. Current experimental and theoretical open issues in the field are assessed together with the potential for future studies in quarkonium-related physics. This will be possible through the exploitation of the huge data samples to be collected in proton-proton, proton-nucleus and nucleus-nucleus collisions, both in the collider and fixed-target modes. Such investigations include, among others, those of: (i) J/ψ and Υ produced in association with other hard particles; (ii) χ c,b and η c,b down to small transverse momenta; (iii) the constraints brought in by quarkonia on gluon PDFs, nuclear PDFs, TMDs, GPDs and GTMDs, as well as on the low-x parton dynamics; (iv) the gluon Sivers effect in polarised-nucleon collisions; (v) the properties of the quark-gluon plasma produced in ultra-relativistic heavy-ion collisions and of collective partonic effects in general; and (vi) double and triple parton scatterings.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

NASA NTRS1999

A Combined Infrared and Microwave Technique for Studying the Diurnal Variation of Rainfall over Amazonia

Over 10 years of continuous data from the Special Sensor microwave Imager (SSM/I) aboard a series of Defense Department satellites has made it possible to construct regional rainfall climatologies at high spatial resolution. Using the Goddard Profiling Algorithm (GPROF), monthly estimates of precipitation were made over the region of northern Brazil, including the Amazon Basin, for 1987 to 1998. GPROF is a physical approach to passive microwave precipitation retrieval, which uses the Goddard Cumulus Ensemble (cloud) model to establish prior probability densities of precipitation structures. Precipitation fields from GPROF were stratified into morning and evening satellite overpasses, and accumulated at monthly intervals at 0.5 degree spatial resolution. Important diurnal effects were noted in the analysis, the most pronounced being a land/sea breeze circulation along the northern coast of Brazil and a mountain/valley circulation along the Andes. There were also indications of morning rainfall maxima along the major rivers, and evening maxima between the rivers. The addition of simultaneous geosynchronous infrared (IR) data leads to the current technique, which takes advantage of the 30 minute sampling and 4 km spatial resolution of the infrared channel and the better physics of the microwave retrieval. The resultant IR method is subsequently used to derive the diurnal variability of rainfall over the Amazon basin, and further, to investigate the relative contribution from its convective and stratiform components.

Negri, Andrew J.↗

DOE OSTI2023

Short-Depth QAOA circuits and Quantum Annealing on Higher-Order Ising Models (Rev.2)

The Quantum Alternating Operator Ansatz (QAOA) and Quantum Annealing (QA) are quantum algorithms that are both based on the adiabatic theorem and both have the goal of sampling the optimal solution(s) of combinatorial optimization problems. Quantum annealing has been physically instantiated on D-Wave devices using superconducting flux qubits, and QAOA can be programmed on digital gate-model quantum computers such as the programmable superconducting transmon qubits devices of the IBMQ series, for instance ibm washington. QAOA and QA address the same types of problems, but it is unclear how they will scale to large problem sizes and to larger and higher-fidelity quantum computers. In this article, we present a direct comparison between QAOA, one and two rounds, run on all 127 qubits of ibm washington and QA run on D-Wave Advantage system4.1 and Advantage system6.1. The problems which allow for this comparison are random Ising model problems whose connectivity matches the heavy hexagonal lattice topology of ibm washington and the Pegasus graph connectivity of the two D-Wave devices. We create two classes of problem instances for this comparison: one with higher order terms (ZZZ variable interactions), linear terms, and quadratic terms, and a separate problem type with only linear and quadratic terms. Our QAOA circuits are novel and extremely short depth, with a CNOT depth of 6 per round, which allows whole chip usage of ibm washington’s heavy hexagonal lattice and can be applied to future heavy-hex chips. We also test the effectiveness of the error suppression technique digital dynamical decoupling on the QAOA circuits. The QAOA circuits compiled to ibm washington are composed of several thousand circuit instructions, approximately 3, 000 depending on the details of the circuit, making these some the largest quantum circuits ever executed on a digital quantum processor. QAOA and QA are compared against the classical heuristic algorithm of simulated annealing and all problem instances are exactly solved using CPLEX in order to evaluate which samplers, if any, correctly found the ground state solution(s) of the problem instances. We find that (i) QA outperforms QAOA on all problem instances, (ii) QAOA samples the problems better than random sampling, and (iii) QAOA angle computation exhibits clear parameter concentration across the ensemble of Ising models.

127 Qubits↗

NASA NTRS1996

Mechanical and Physical Properties of Both Unaged and Aged Coflon and Tefzel

This report deals with all recent mechanical testing performed on variously aged samples of Coflon and TefzeL to complete the work for Phase 1. Earlier results were reported in CAPP/M.7. Fluids A, F, G, and I have all been used for ageing in the last 12 month period, with particular attention concentrated on the effects of Fluid F as a result of discussions at the December 1995 steering committee meeting in Austin. Dramatic mechanical and physical changes occurred to Coflon in our initial studies after 4 weeks at 120 C in this sour gas mixture and so a detailed matrix was drawn up to investigate the effects of time and temperature of exposure. Subsequent tensile tests and compact tension (CT) fatigue tests were performed. Fatigue testing has been limited during this period to Coflon only; however, Tefzel CT samples have been exposed to the same conditions as the Coflon allowing the possibility for fatigue tests to be performed at a later date. Fluid A exposures during the last 6 months have been long-term at 65 C, 100 C and 120 C only. These exposures have been a continuation of earlier work and will complete the investigation of this fluid. Other chemical ageings have involved Fluid G at 120 C to confirm and investigate the hostile nature of this fluid on Coflon. Again, this fluid will not be used in Phase 2. Finally, long-term exposures in Fluid 1, a high aromatic oil mixture, were carried out to investigate the effects on the polymers of aromaticity in a simulated service fluid.

Samulak, M.↗

DOE OSTI2020

Nuclear data uncertainty propagation and modeling uncertainty impact evaluation in neutronics core simulation

Uncertainty analysis is a critical requirement in reactor simulation as it is used to quantify the reliability of best-estimate calculation. A comprehensive uncertainty analysis should characterize all sources of uncertainties in a computationally-feasible and scientifically-defendable manner. Here we employ a well-established reduced order modeling (ROM) based uncertainty quantification methodology to propagate uncertainties throughout neutronic calculations. ROM relies on recent advances in randomized data mining techniques applied to large data streams. In our proposed implementation, the nuclear data uncertainties are first propagated from multi-group level through lattice physics calculation to generate few-group parameter uncertainties, described using a vector of mean values and a covariance matrix. Employing an ROM-based compression of the covariance matrix, the few-group uncertainties are then propagated through downstream core simulation in a computationally efficient manner. This straightforward approach, albeit efficient as compared to brute force forward and/or adjoint-based methods, often employs a number of assumptions that have been unquestioned in the literature of neutronic uncertainty analysis. This manuscript argues that these assumptions could introduce another source of uncertainty referred to as modeling uncertainties, whose magnitude needs to be quantified in tandem with nuclear data uncertainties. Thus, our primary goal is to explore the interactions between these two uncertainty sources in order to assess whether modeling uncertainties have an impact on parameter uncertainties. To explore this endeavor, the impact of a number of modeling assumptions on core attributes uncertainties is quantified. The study employs a CANDU reactor model, with Serpent and NEWT as lattice physics solvers and NESTLE-C as core simulator. The modeling assumptions investigated include those related with the uncertainty propagation method employed, e.g., deterministic vs. stochastic, the few-group energy structure employed to represent the cross-sections, the resonance treatment in lattice physics calculation, the reference values for the cross-section, and the number of samples employed to render ROM compression. Results indicate that some of the modeling assumptions could have a non-negligible impact on the core responses propagated uncertainties, highlighting the need for a more comprehensive approach to combine parameter and modeling uncertainties.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗