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At least 757 records · Page 42

Time-sliced quantum circuit partitioning for modular architectures

Current quantum computer designs will not scale. To scale beyond small prototypes, quantum architectures will likely adopt a modular approach with clusters of tightly connected quantum bits and sparser connections between clusters. We exploit this clustering and the statically-known control flow of quantum programs to create tractable partitioning heuristics which map quantum circuits to modular physical machines one time slice at a time. Specifically, we create optimized mappings for each time slice, accounting for the cost to move data from the previous time slice and using a tunable lookahead scheme to reduce the cost to move to future time slices. We compare our approach to a traditional statically-mapped, owner-computes model. Our results show strict improvement over the static mapping baseline. Here, we reduce the non-local communication overhead by 89.8% in the best case and by 60.9% on average. Our techniques, unlike many exact solver methods, are computationally tractable.

Baker, Jonathan M.↗

Liquid–Ice Mass Partition in Tropical Maritime Convective Clouds

The liquid–ice mass partitioning in tropical maritime convective clouds is studied in this paper using data collected by the National Center for Atmospheric Research C-130 research aircraft during the Ice in Clouds Experiment–Tropical project. The clouds investigated by the C-130 in this study generally contained weak to moderate updrafts. The liquid water content (LWC) is calculated using a combination of hot-wire and imaging probes. The total condensed water content (CWC) is measured by a counterflow virtual impactor. The ice water content (IWC) is calculated as CWC minus LWC. Taking into account potential significant measurement uncertainties, the liquid fraction [i.e., LWC/(LWC + IWC)] between 0° and -15°C appears to decrease by a factor of about 3 in updrafts near (<500 m) cloud top and a factor of 2 in updrafts far below (>500 m) cloud top. The decrease in liquid fraction as a function of temperature is also correlated with cloud life cycle. In dissipating clouds, ice dominates in all temperature ranges. A comparison between this study and two parameterizations shows that at different geographic locations the liquid fraction in convective clouds differs. Because of the sampling bias and the limitations of instruments, more measurements, especially with more advanced instruments, are needed in the future.

54 ENVIRONMENTAL SCIENCES↗

Race conditions and data partitioning: risks posed by common errors to reproducible parallel simulations

When parallel algorithms for simulation were introduced in the 1970s, their development and use interested only experts in parallel computation. This circumstance changed as multi-core processors became commonplace, putting a parallel computer into the hands of every modeler. A natural outcome is growing interest in parallel simulation among persons not intimately familiar with parallel computing. At the same time, parallel simulation tools continue to be developed with the implicit assumption that the modeler is knowledgeable about parallel programming. The unintended consequence is a rapidly growing number of users of parallel simulation tools that are unlikely to recognize when the interaction of race conditions, partitioning strategies, and simultaneous action in their simulation models make results non-reproducible, thereby calling into question the validity of conclusions drawn from the simulation data. Here, we illustrate the potential dangers of exposing parallel algorithms to users who are not experts in parallel computation with example models constructed using existing parallel simulation tools. By doing so, we hope to refocus tool developers on usability, even if this new focus incurs loss of some performance.

97 MATHEMATICS AND COMPUTING↗

Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations

Abstract Background Peatlands are expected to experience sustained yet fluctuating higher temperatures due to climate change, leading to increased microbial activity and greenhouse gas emissions. Despite mounting evidence for viral contributions to these processes in peatlands underlain with permafrost, little is known about viruses in other peatlands. More generally, soil viral biogeography and its potential drivers are poorly understood at both local and global scales. Here, 87 metagenomes and five viral size-fraction metagenomes (viromes) from a boreal peatland in northern Minnesota (the SPRUCE whole-ecosystem warming experiment and surrounding bog) were analyzed for dsDNA viral community ecological patterns, and the recovered viral populations (vOTUs) were compared with our curated PIGEON database of 266,125 vOTUs from diverse ecosystems. Results Within the SPRUCE experiment, viral community composition was significantly correlated with peat depth, water content, and carbon chemistry, including CH 4 and CO 2 concentrations, but not with temperature during the first 2 years of warming treatments. Peat vOTUs with aquatic-like signatures (shared predicted protein content with marine and/or freshwater vOTUs) were significantly enriched in more waterlogged surface peat depths. Predicted host ranges for SPRUCE vOTUs were relatively narrow, generally within a single bacterial genus. Of the 4326 SPRUCE vOTUs, 164 were previously detected in other soils, mostly peatlands. None of the previously identified 202,371 marine and freshwater vOTUs in our PIGEON database were detected in SPRUCE peat, but 0.4% of 80,714 viral clusters (VCs, grouped by predicted protein content) were shared between soil and aquatic environments. On a per-sample basis, vOTU recovery was 32 times higher from viromes compared with total metagenomes. Conclusions Results suggest strong viral “species” boundaries between terrestrial and aquatic ecosystems and to some extent between peat and other soils, with differences less pronounced at higher taxonomic levels. The significant enrichment of aquatic-like vOTUs in more waterlogged peat suggests that viruses may also exhibit niche partitioning on more local scales. These patterns are presumably driven in part by host ecology, consistent with the predicted narrow host ranges. Although more samples and increased sequencing depth improved vOTU recovery from total metagenomes, the substantially higher per-sample vOTU recovery after viral particle enrichment highlights the utility of soil viromics.

59 BASIC BIOLOGICAL SCIENCES↗

Metagenomics-resolved genomics provides novel insights into chitin turnover, metabolic specialization, and niche partitioning in the octocoral microbiome

Abstract Background The role of bacterial symbionts that populate octocorals (Cnidaria, Octocorallia) is still poorly understood. To shed light on their metabolic capacities, we examined 66 high-quality metagenome-assembled genomes (MAGs) spanning 30 prokaryotic species, retrieved from microbial metagenomes of three octocoral species and seawater. Results Symbionts of healthy octocorals were affiliated with the taxa Endozoicomonadaceae , Candidatus Thioglobaceae , Metamycoplasmataceae , unclassified Pseudomonadales , Rhodobacteraceae , unclassified Alphaproteobacteria and Ca. Rhabdochlamydiaceae . Phylogenomics inference revealed that the Endozoicomonadaceae symbionts uncovered here represent two species of a novel genus unique to temperate octocorals, here denoted Ca. Gorgonimonas eunicellae and Ca. Gorgonimonas leptogorgiae . Their genomes revealed metabolic capacities to thrive under suboxic conditions and high gene copy numbers of serine-threonine protein kinases, type 3-secretion system, type-4 pili, and ankyrin-repeat proteins, suggesting excellent capabilities to colonize, aggregate, and persist inside their host. Contrarily, MAGs obtained from seawater frequently lacked symbiosis-related genes. All Endozoicomonadaceae symbionts harbored endo-chitinase and chitin-binging protein-encoding genes, indicating that they can hydrolyze the most abundant polysaccharide in the oceans. Other symbionts, including Metamycoplasmataceae and Ca. Thioglobaceae , may assimilate the smaller chitin oligosaccharides resulting from chitin breakdown and engage in chitin deacetylation, respectively, suggesting possibilities for substrate cross-feeding and a role for the coral microbiome in overall chitin turnover. We also observed sharp differences in secondary metabolite production potential between symbiotic lineages. Specific Proteobacteria taxa may specialize in chemical defense and guard other symbionts, including Endozoicomonadaceae , which lack such capacity. Conclusion This is the first study to recover MAGs from dominant symbionts of octocorals, including those of so-far unculturable Endozoicomonadaceae , Ca. Thioglobaceae and Metamycoplasmataceae symbionts. We identify a thus-far unanticipated, global role for Endozoicomonadaceae symbionts of corals in the processing of chitin, the most abundant natural polysaccharide in the oceans and major component of the natural zoo- and phytoplankton feed of octocorals. We conclude that niche partitioning, metabolic specialization, and adaptation to low oxygen conditions among prokaryotic symbionts likely contribute to the plasticity and adaptability of the octocoral holobiont in changing marine environments. These findings bear implications not only for our understanding of symbiotic relationships in the marine realm but also for the functioning of benthic ecosystems at large.

59 BASIC BIOLOGICAL SCIENCES↗

Data and script associated with “Shifts in Rain-Snow Partitioning Drive Faster Water Transit Times in the US Pacific Northwest”

This data package contains the data and code to use and run the Water Tracer enabled version of the Weather Research and Forecasting Hydrologic model (WT-WRF-Hydro) with the Sequential Precipitation Input Tagging (SPIT) framework. It is associated with the publication “Shifts in Rain-Snow Partitioning Drive Faster Water Transit Times in the US Pacific Northwest” published in Scientific Reports (Butler et al., 2026; https://doi.org/10.1038/s41598-026-46539-1). We use the Continental U.S. (CONUSII; Rasmussen et al., 2021) dataset to force the model with an historical climate (2006–2013) and a future climate (2086–2093) with a representative carbon pathway (RCP) 8.5 scenario. We use the model to calculate water transit times in five headwater catchments within the U.S. Pacific Northwest. We also show key hydrologic and environmental variables that affect water transit times and changes in the future. Finally, we use observed data to validate the model such as stream water isotopes, snowpack characteristics, and stream discharge. For details on how to navigate data packages generated by this project, see https://data.ess-dive.lbl.gov/portals/PNNLRiverCorridorSFA/About. In addition to a readme, this data package also includes a file-level metadata (FLMD) file that describes each file and a data dictionary (DD) that describes all column/row headers and variable definitions. The data package consists of 11 folders: (1) "Figures" contains the exported figures used in the manuscript; (2) "Model_Isotope_Date" contains the WT-WRF-Hydro isotope date used in model validation; (3) “Model_Outputs_Future” contains the WT-WRF-Hydro future climate outputs; (4) “Model_Outputs_Historical” contains the WT-WRF-Hydro historical climate outputs; (5) “Model_Outputs_Weights_Areas” contains the WT-WRF-Hydro weights per catchment used to calculate water transit times and isotopes in stream water; (6) “MODIS_data_scripts” contains data used to validate snow conditions in the study area; (7) “Observed_Flow_Data” contains the observed streamflow data used in model validation; (8) “Observed_Isotope_Data” contains the observed stream water isotope data used in model validation; (9) “Scripts” contains the Python scripts used to general results and the figures; (10) “Statistic_Outputs” contains the water transit time statistical outputs reported in this manuscript; (11) “Validation_SNOTEL” contains the SNOTEL data used in model validation. The files in this data package have the following file extensions: .tif, .txt, .csv, .pdf, .py, .jpg, and .png.

American River↗

Modeling of non-equilibrium partitioning in direct metal deposited copper–iron concentrated alloys

The direct metal deposition (DMD) additive manufacturing process produces high cooling rates within a small melt pool and can lead to high amounts of solute trapping. These high cooling rates limit diffusion and lead to the formation of non-equilibrium phases. In this work, we utilize a numerical model to calculate the degree of solute trapping, defined as non-equilibrium partitioning. A theoretical case with overall composition fixed to 50Cu-50Fe at.%. was performed to observe the influence of increasing solidification rates. We then simulate DMD of equimolar Cu-Fe powder printed on mild steel substrate and the calculated non-equilibrium phase compositions were consistent with experimental observations reported earlier on this alloy composition. For a single deposited track, cooling rates are high enough to yield significant solute trapping. Here, the degree of solute trapping is highest near the free surface and has a gradient that correlates with the cooling rate gradient.

36 MATERIALS SCIENCE↗

Energy Partitioning, Energy Coupling (EPEC) Experiments at the National Ignition Facility

The energy-partitioning, energy-coupling (EPEC) experiments at the National Ignition Facility (NIF) will simultaneously measure the coupling of energy into both ground shock and air-blast overpressure from a laser-driven target. The source target for the experiment is positioned at a known height above the ground-surface simulant and is heated by four beams from NIF. The resulting target energy density and specific energy are equal to those of a low-yield nuclear device. The ground-shock stress waves and atmospheric overpressure waveforms that result in our test system are hydrodynamically scaled analogs of seismic and air-blast phenomena caused by a nuclear weapon. In what follows, we discuss the motivation for our investigation and briefly describe NIF. Then, we introduce the EPEC experiments, including diagnostics, in more detail.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Advanced Aqueous Separation Systems for Actinide Partitioning

One of the most challenging aspects of advanced processing of spent nuclear fuel is the need to isolate transuranium elements from fission product lanthanides. This project expanded the scope of earlier investigations of americium (Am) partitioning from the lanthanides with the synthesis of new separations materials and a centralized focus on radiochemical characterization of the separation systems that could be developed based on these new materials. The primary objective of this program was to explore alternative materials for actinide separations and to link the design of new reagents for actinide separations to characterizations based on actinide chemistry. In the predominant trivalent oxidation state, the chemistry of lanthanides overlaps substantially with that of the trivalent actinides and their mutual separation is quite challenging.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Design of the Energy Partitioning Energy Coupling (EPEC) NIF Experiment

Using scaled experiments performed at the National Ignition Facility (NIF), the Energy Partitioning Energy Coupling (EPEC) experimental platform will provide benchmark data from scaled high energy density (HED) environments to validate codes for prompt yield determination following a near surface explosion. A set of numerical codes has been used to design the experiment and predict the experimental results. Preliminary NIF shots assessing performance of the EPEC energy source (a halfraum) have been carried out. Modeling of the EPEC experiments is discussed, with comparisons to results from the source shots.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

AM(VI) partitioning studies. FY14 final report

The use of higher oxidation states of americium in partitioning from the lanthanides is under continued investigation by the sigma team. This is based on the hypothesis that Am(VI) can be produced and remain stable in irradiated first cycle raffinate solution long enough to perform solvent extraction for separations. The stability of Am(VI) to autoreduction was measured using millimolar americium concentrations in a 1-cm cell with a Cary 6000 UV/Vis spectrophotometer for data acquisition. At millimolar americium concentrations, Am(VI) is stable enough against its own autoreduction for separations purposes. A second major accomplishment during FY14 was the hot test. Americium oxidation and extraction was performed using a centrifugal contactor-based test bed consisting of an extraction stage and two stripping stages. Sixty-three percent americium extraction was obtained in one extraction stage, in agreement with batch contacts. Promising electrochemical oxidation results have also been obtained, using terpyridine ligand derivatized electrodes for binding of Am(III). Approximately 50 % of the Am(III) was oxidized to Am(V) over the course of 1 hour. It is believed that this is the first demonstration of the electrolytic oxidation of americium in a non-complexing solution. Finally, an initial investigation of Am(VI) extraction using diethylhexylbutyramide (DEHBA) was performed.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Task Parallel Incomplete Cholesky Factorization using 2D Partitioned-Block Layout

We introduce a task-parallel algorithm for sparse incomplete Cholesky factorization that utilizes a 2D sparse partitioned-block layout of a matrix. Our factorization algorithm follows the idea of algorithms-by-blocks by using the block layout. The algorithm-byblocks approach induces a task graph for the factorization. These tasks are inter-related to each other through their data dependences in the factorization algorithm. To process the tasks on various manycore architectures in a portable manner, we also present a portable tasking API that incorporates different tasking backends and device-specific features using an open-source framework for manycore platforms i.e., Kokkos. A performance evaluation is presented on both Intel Sandybridge and Xeon Phi platforms for matrices from the University of Florida sparse matrix collection to illustrate merits of the proposed task-based factorization. Experimental results demonstrate that our task-parallel implementation delivers about 26.6x speedup (geometric mean) over single-threaded incomplete Choleskyby- blocks and 19.2x speedup over serial Cholesky performance which does not carry tasking overhead using 56 threads on the Intel Xeon Phi processor for sparse matrices arising from various application problems.

2D layout↗

Partitioning CO 2 fluxes with isotopologue measurements and modeling to understand mechanisms of forest carbon sequestration

This project combines automated in situ observations of the isotopologues of CO 2 with root observations, novel experimental manipulations of below ground processes, and isotope-enabled ecosystem modeling to investigate mechanisms of below- vs. above ground carbon sequestration at the Harvard Forest Environmental Measurements Site (EMS). The proposed objectives, which have now been largely accomplished, include: (A) Partitioning of net ecosystem CO2 exchange (NEE) into photosynthesis and respiration using long-term continuous observations of the isotopic composition of NEE, and analysis of their dynamics; (B) Investigation of the influence of vegetation phenology on the timing and magnitude of carbon allocated below ground using measurements of root growth and indices of below ground autotrophic vs. heterotrophic respiration (via trenched plots andisotope measurements); (C) Testing whether plant allocation of carbon below ground stimulates the microbial decomposition of soil organic matter, using in situ rhizosphere simulation experiments wherein realistic quantities of artificial isotopically-labeled exudates are released into the soil; and (D) Synthesis and interpretation of the above data using the Ecosystem Demography Model 2 (ED2).

54 ENVIRONMENTAL SCIENCES↗

Managing Zirconium Chemistry and Phase Compatibility in Combined Process Separations for Minor Actinide Partitioning

In response to the NEUP Program Supporting Fuel Cycle R&D Separations and Waste Forms call DEFOA- 0000799, this report describes the results of an R&D project focusing on streamlining separation processes for advanced fuel cycles. An example of such a process relevant to the U.S. DOE FCR&D program would be one combining the functions of the TRUEX process for partitioning of lanthanides and minor actinides from PUREX(UREX) raffinates with that of the TALSPEAK process for separating transplutonium actinides from fission product lanthanides. A fully-developed PUREX(UREX)/TRUEX/TALSPEAK suite would generate actinides as product(s) for reuse (or transmutation) and fission products as waste. As standalone, consecutive unit-operations, TRUEX and TALSPEAK employ different extractant solutions (solvating (CMPO, octyl(phenyl)-N,Ndiisobutylcarbamoylmethylphosphine oxide) vs. cation exchanging (HDEHP, di-2(ethyl)hexylphosphoric acid) extractants), and distinct aqueous phases (2-4 M HNO 3 vs. concentrated pH 3.5 carboxylic acid buffers containing actinide selective chelating agents). The separate processes may also operate with different phase transfer kinetic constraints. Experience teaches (and it has been demonstrated at the lab scale) that, with proper control, multiple process separation systems can operate successfully. However, it is also recognized that considerable economies of scale could be achieved if multiple operations could be merged into a single process based on a combined extractant solvent. The task of accountability of nuclear materials through the process(es) also becomes more robust with fewer steps, providing that the processes can be accurately modeled. Work is underway in the U.S. and Europe on developing several new options for combined processes (TRUSPEAK, ALSEP, SANEX, GANEX, ExAm are examples). There are unique challenges associated with the operation of such processes, some relating to organic phase chemistry, others arising from the variable composition of the aqueous medium. This project targets in particular two problematic issues in designing combined process systems: managing the chemistry of challenging aqueous species (like Zr 4+ ) and optimizing the composition and properties of combined extractant organic phases.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Organic Speciation and Interactions in ALSEP. One Step Partitioning Process of MinorActinides, Lanthanides, and Fission Products

Research conducted in this project focused on speciation characterization of the ALSEP extraction system (similar to the TALSPEAK-like application) which addresses recovery of minor actinides and lanthanides from PUREX raffinate. The ALSEP (Actinide-Lanthanide Separation) system proposes a trivalent minor actinide/lanthanide group extraction followed by a selective actinide strip to effectively partition minor actinides, lanthanides, and other fission products. The group extraction is achieved by a mixed organic solvent, combining acidic and neutral extracting ligands. The objective of this work is investigation the interactions of the acidic and neutral ligands with each other in the extraction organic solvent and with desired metals. Four combinations of a cation-exchange ligand (either HDEHP or HEH[EHP]) and a neutral solvating ligand (either TODGA or T2EHDGA) in n-dodecane were studied. Interligand dimers in these combinations were investigated with NMR and FTIR, the strongest interaction was observed for HDEHP+TODGA and weakest for T2EHDGA+HEH[EHP]. Complexes of the trivalent Am and lanthanides Nd, Eu, Ho, Pr in these binary ligand mixtures were probed with spectroscopic (UV–vis, time-resolved fluorescence, XAFS and SAXS-spectroscopies) and extraction (Job’s plot, slope analysis) methods; co-extracted water and nitric acid were analyzed by titration methods. Comparison of the collected spectra showed significant shifting for both DGA ligands with HDEHP, while both combinations of HEH[EHP]+DGA displayed much smaller spectral changes. Data were modeled with HypSpec program, and stability constants for extracted complexes were calculated. Aggregation in these systems were studied by SAXS (small-angle X-ray scattering) spectroscopy and interfacial tension, size of aggregates were measured. Two PhD students graduated (2017, 2018) and one student continues her PhD study.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Aerosol effects on the anvil characteristics, cold pool forcing and stratiform-convective precipitation partitioning and latent heating of mesoscale convective systems

The overarching science goal of this project has been to assess the impacts of aerosols on mesoscale convective systems (MCSs). More specifically we have investigated the impacts of (a) aerosol types, (b) aerosol concentrations, and (c) the vertical and horizontal location of aerosols on the (1) anvil cloud characteristics and feedbacks; (2) total precipitation and the partitioning between convective and stratiform precipitation; (3) the vertical heating structure; (4) hydrometeor size distributions; and (5) the strength and intensity of the cold pools and updrafts. These have been achieved both through observational analyses and high-resolution cloud-resolving model simulations of three MCSs that were observed during the MC3E field campaign (25 April, 20 May and 23 May 2011). The primary findings of these research are the following: Condensation and deposition are the primary contributors to MCS latent warming, when compared to riming and nucleation processes. In terms of MCS latent cooling, sublimation, melting, and evaporation all play significant roles. Throughout the MCS lifecycle, convective regions demonstrate an approximately linear decrease in the magnitudes of latent heating rates, while latent heating within stratiform regions is associated with transitions between MCS flow regimes including the rear inflow jet. Such information regarding the temporal evolution of latent heating within convective and stratiform MCS regions could be useful in developing parameterizations representing convective organization. Increasing aerosol concentration from a clean continental to a highly polluted state produces an increase in the riming rates of cloud water, which results in less lofted cloud water in polluted environments. Aerosol-induced trends in the cloud mixing ratio profiles are, however, nonmonotonic in the mixed phase region, such that a moderate increase in aerosol concentration produces the greatest reduction in cloud water. Less lofted cloud water due to enhanced riming rates leads to reduced anvil ice mixing ratios but to greater numbers of small ice crystals within the anvil. In spite of reduced anvil ice mixing ratio, the anvil clouds exhibit greater areal coverage, increased albedo, reduced cloud top cooling, and reduced net radiative flux, which produces an aerosol-induced warming (reduced cooling) effect in these MCSs. Lower-tropospheric aerosol particles largely influence the MCS precipitation response directly rearward of the leading cold pool boundary. However, further backward in the MCS, the relative impact of lower- versus mid-tropospheric aerosol particles is strongly dependent on the MCS structure and differences in the line-normal wind shear. Mid-tropospheric aerosol particles are able to activate new cloud droplets in the mid-tropospheric levels of convective updrafts and thereby enhance mixed-phase precipitation through increased cloud riming.

54 ENVIRONMENTAL SCIENCES↗

Partitioning of Complex Fluids at Mineral Surfaces

This report summarizes the results obtained during the LDRD project entitled "Partitioning of Complex Fluids at Mineral Interfaces." This research addressed fundamental aspects of such interfaces, which are relevant to energy-water applications in the subsurface, including fossil energy extraction and carbon sequestration. This project directly addresses the problem of selectivity of complex fluid components at mineral-fluid interfaces, where complex fluids are defined as a mixture of hydrophobic and hydrophilic components: e.g., water, aqueous ions, polar/nonpolar organic compounds. Specifically, this project investigates how adsorption selectivity varies with surface properties and fluid composition. Both experimental and molecular modeling techniques were used to better understand trends in surface wettability on mineral surfaces. The experimental techniques spanned the macroscale (contact angle measurements) to the nanoscale (cryogenic electronic microscopy and vibrational spectroscopy). We focused on an anionic surfactant and a well-characterized mineral phase representative of clay phases present in oil- and gas-producing shale deposits. Collectively, the results consistently demonstrate that the presence of surfactant in the aqueous fluid significantly affects the mineral-fluid interfacial structure. Experimental and molecular modeling results reveal details of the surfactant structure at the interface, and how this structure varies with surfactant coverage and fluid composition.

04 OIL SHALES AND TAR SANDS↗