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At least 757 records · Page 42

The Structure of Glycine Dihydrate: Implications for the Crystallization of Glycine from Solution and Its Structure in Outer Space

Glycine, the simplest amino acid, is also the most polymorphous. Herein, we report the structure determination of an unknown phase of glycine which was firstly reported by Pyne and Suryanarayanan in 2001. To date, the new phase has only been prepared at 208 K as nanocrystals within ice. Through computational crystal structure prediction and powder X-ray diffraction methods, we identified this elusive phase as glycine dihydrate (GDH), representing a first report on a hydrated glycine structure. The structure of GDH has important implications for the state of glycine in aqueous solution, and the mechanisms of glycine crystallization. GDH may also be the form of glycine that comes to Earth from extraterrestrial sources.

amino acid↗

Interstitial Atoms and the Frustrated and Allowed Structural Transitions Principle: Tunability in the Electronic Structure of AuCu 3 ‐type Frameworks in Dy 4 T 1− x Ga 12 (T = Ag, Ir)

In this Article, we explore how the chemical pressure (CP) features of an intermetallic phase may provide opportunities to couple perturbations in electron count with the stabilization of the underlying geometrical structure. AuCu 3 ‐type LnGa 3 (Ln = lanthanide or group 3 metal) phases contain octahedral cavities of negative CP held open by overly compressed Ln–Ga interactions, leading to a series of transition metal‐stuffed derivatives. We present new additions to this family with the synthesis and crystal structures of Dy 4 T 1−x Ga 12 with (T, x) = (Ag, 0.29) and (Ir, 0.15), adopting Y 4 PdGa 12 ‐type superstructures of the AuCu 3 ‐type. density functional Ttheory (DFT)‐CP calculations, when adjusted to avoid dipolar CP features, affirm that T atom incorporation provides a mechanism for the relief of packing tensions, while electronic density of states distributions illustrate that the T atoms serve largely as electron or hole donors to the band structure, as needed for them to attain d 10 configurations. The maximum obtainable value for x may be limited by a mismatch between the Fermi energy and pseudogap, in line with the balance of factors envisioned by the frustrated and allowed structural transitions principle. Furthermore, trends in resistivity measurements on T = Ir, Pd, and Ag compounds are interpretable in terms of the varying degrees of disorder arising from x < 1.0.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Rationalizing the photophysical properties of BODIPY laser dyes via aromaticity and electron-donor-based structural perturbations

The absorption and fluorescence properties of six boron dipyrromethene (BODIPY) laser dyes with simple non-aromatic substituents are rationalized by relating them to observable structural perturbations within the molecules of the dyes. An empirical relationship involving the structure and the optical properties is derived using a combination of single-crystal X-ray diffraction data, quantum chemical calculations and electronic constants: i.e. the tendency of the pyrrole bond lengths towards aromaticity and the UV-vis absorption and fluorescence wavelengths correlating with the electron-donor properties of the substituents. The effect of molecular conformation on the solid-state optical properties of the dyes is also discussed. The findings in this study also demonstrate the usefulness and limitations of using crystal structure data to develop structure-property relationships in this class of optical materials, contributing to the growing effort to design optoelectronic materials with tunable properties via molecular engineering.

absorption↗

Synthesis, crystal structures and properties of lanthanide-organic frameworks based benzene carboxylates with two/three-dimensional structure

A series of lanthanide coordination polymers, {l_brace}[Dy{sub 3}(1,3-BDC){sub 4}(NO{sub 3})(phen){sub 3}]{center_dot}2H{sub 2}O{r_brace}{sub n} (1), {l_brace}[Dy{sub 2}(1,3-BDC){sub 3}(H{sub 2}O){sub 2}]{center_dot}H{sub 2}O{r_brace}{sub n} (2), {l_brace}[Ln{sub 4}(1,3-BDC){sub 6}(DMF)(H{sub 2}O){sub 4}]{center_dot}DMF{center_dot}2H{sub 2}O{r_brace}{sub n} (Ln=Tb (3), Ho (4), Er (5), 1,3-H{sub 2}BDC=1,3-benzenedicarboxylate, phen=1,10-phenanthroline, DMF=N,N-dimethylformamide), have been synthesized and characterized. In coordination polymer 1, each Dy{sup 3+} ion is connected to its neighboring Dy{sup 3+} ion through bridging carboxyl oxygen atoms of the 1,3-BDC{sup 2-} ligands to form a new three-dimensional open-framework structure which the Schlaefli symbol of {l_brace}6{sup 4}{center_dot}8{sup 2}{r_brace}{sub 2}{l_brace}6{sup 6}{r_brace}. In coordination polymer 2, center metal dysprosium ions are interlaced and connected through bridging carboxyl oxygen atoms to form an infinite helix chain. Two helix chains are linked through the 1,3-BDC{sup 2-} ligand to give rise to the two-dimensional layered structure. Coordination polymers 3-5 are isomorphous, which displays a (3,4)-connected net with the point symbol of {l_brace}4{sup 2}{center_dot}6{sup 3}{center_dot}8{r_brace}{l_brace}4{sup 2}{center_dot}6{r_brace}. The solid-state photoluminescence properties and lifetimes of the Dy (1 and 2) and Tb (3) coordination polymers have been measured at room temperature. Highlights: Black-Right-Pointing-Pointer Five lanthanide coordination polymers based on 1,3-H{sub 2}BDC were obtained. Black-Right-Pointing-Pointer The polymers were structurally characterized by single-crystal X-ray diffraction. Black-Right-Pointing-Pointer Coordination polymers 1-5 display different topological structures. Black-Right-Pointing-Pointer They show characteristic emissions of lanthanide ions in the solid state.

36 MATERIALS SCIENCE↗

Investigation of magnetic properties and electronic structure of layered-structure borides AlT{sub 2}B{sub 2} (T=Fe, Mn, Cr) and AlFe{sub 2–x}Mn{sub x}B{sub 2}

The ternary phases AlT{sub 2}B{sub 2} (T=Fe, Mn, Cr) and quaternary phases AlFe{sub 2–x}Mn{sub x}B{sub 2} have been synthesized by arc-melting and characterized by powder X-ray diffraction, magnetic measurements, Mössbauer spectroscopy, and electronic band structure calculations. All the compounds adopt the AlFe{sub 2}B{sub 2}-type structure, in which infinite zigzag chains of B atoms are connected by Fe atoms into [Fe{sub 2}B{sub 2}] slabs that alternate with layers of Al atoms along the b axis. The magnetic measurements reveal that AlFe{sub 2}B{sub 2} is a ferromagnet with T{sub C}=282 K while AlMn{sub 2}B{sub 2} and AlCr{sub 2}B{sub 2} do not show magnetic ordering in the studied temperature range of 1.8–400 K. A systematic investigation of solid solutions AlFe{sub 2−x}Mn{sub x}B{sub 2} showed a non-linear change in the structural and magnetic behavior. The ferromagnetic ordering temperature is gradually decreased as the Mn content (x) increases. The Mössbauer spectra reveal the presence of non-magnetic (NM) and ferromagnetic (FM) spectral components in all Mn-containing samples, with the amount of NM fraction increasing as the Mn content increases. While for the AlFe{sub 2−x}Mn{sub x}B{sub 2} samples with x=0.0 and 0.4 the hyperfine splitting of the FM spectral component collapses at temperatures close to the Curie temperatures determined from the magnetic measurements, for the x=1.2 and 1.6 samples the FM fraction exhibits a sizable unquenched hyperfine splitting at room temperature, a finding that is inconsistent with the observed magnetic properties. Along with the increase in the amount of the NM fraction, this observation suggests formation of Fe-rich and Mn-rich regions in the structure of the solid solutions. Quantum-chemical calculations and crystal orbital Hamilton population analysis provide a clear explanation of the distinction in properties for this series of compounds and also reveal the importance of electronic factors in modifying the magnetic properties of these materials. - Graphical abstract: We follow a gradual evolution of magnetic properties in a series of ternary borides AlT{sub 2}B{sub 2}, from non-magnetic AlCr{sub 2}B{sub 2} and AlMn{sub 2}B{sub 2} to ferromagnetic AlFe{sub 2}B{sub 2}. - Highlights: • AlT{sub 2}B{sub 2} (T=Fe, Mn, Cr) and AlFe{sub 2−x}Mn{sub x}B{sub 2} were prepared by arc‐melting. • Bulk ferromagnetism of AlFe{sub 2}B{sub 2} is gradually suppressed by the introduction of Mn. • AlMn{sub 2}B{sub 2} and AlCr{sub 2}B{sub 2} do not exhibit magnetic ordering. • Nonmagnetic (Mn‐rich) and ferromagnetic (Fe‐rich) clustering in AlFe{sub 2–x}Mn{sub x}B{sub 2}. • Ferromagnetism is suppressed due to weakening of antibonding T–T interactions.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Structural, magnetic and electronic structure properties of Co doped ZnO nanoparticles

Highlights: • XRD and HR-TEM results show the single phase nature of Co doped ZnO nanoparticles. • XMCD and dc magnetization results indicate the RT-FM in Co doped ZnO nanoparticles. • Co L{sub 3,2} NEXAFS spectra infer that Co ions are in 2+ valence state. • O K edge NEXAFS spectra show that O vacancy increases with Co doping in ZnO. - Abstract: We reported structural, magnetic and electronic structure studies of Co doped ZnO nanoparticles. Doping of Co ions in ZnO host matrix has been studied and confirmed using various methods; such as X-ray diffraction (XRD), field emission scanning electron microscopy (FE-SEM), energy dispersed X-ray (EDX), high resolution transmission electron microscopy (HR-TEM), Fourier transform infrared spectroscopy (FT-IR), near edge X-ray absorption fine structure (NEXAFS) spectroscopy, magnetic hysteresis loop measurements and X-ray magnetic circular dichroism (XMCD). From the XRD and HR-TEM results, it is observed that Co doped ZnO nanoparticles have single phase nature with wurtzite structure and exclude the possibility of secondary phase formation. FE-SEM and TEM micrographs show that pure and Co doped nanoparticles are nearly spherical in shape. O K edge NEXAFS spectra indicate that O vacancies increase with Co doping. The Co L{sub 3,2} edge NEXAFS spectra revealed that Co ions are in 2+ valence state. DC magnetization hysteresis loops and XMCD results clearly showed the intrinsic origin of temperature ferromagnetism in Co doped ZnO nanoparticles.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Heterometallic UO 2 2+ /Ag + Complexes: Structural Design and Luminescence Properties

Reported here are the synthesis, structural characterization, and luminescence properties of 11 novel UO 2 2+ /Ag + heterometallic complexes. Halogenated benzoic acids (2,6-dihalobenzoic acid (halo = F, Br), 3,5-dichlorobenzoic acid, and 3-halobenzoic acid (halo = Br, I)) and N-donor polycyclic ligands (2,2′-bipyridine, 2,2’;6′,2″-terpyridine, 1,10-phenanthroline, 2,2′-bipyrimidine) were employed to synthesize a set of compounds and induce structural diversity. The primary mode of coordination with the uranyl cation is hexagonal bipyramidal monomeric units with three halobenzoate ligands in the equatorial plane, though 1-D chains with pentagonal bipyramidal uranyl centers also form. The Ag + cations coordinate preferentially to the N-donor ligands and serve as counter-cations for the anionic uranyl motifs. The soft ligand character of the N-donor molecules is found to be a requirement for the inclusion of the Ag + cation into the structures. Anionic uranyl units and cationic silver units assemble via noncovalent interactions between π systems on adjacent rings and between halogens (when Br and I are present). Solid-state emission spectra display the usual uranyl band with superimposed vibronic fine structure, except for that of compound 1 , which shows emission from the 2,2′-bipyridine center. This family of compounds represents a substantial contribution to the already rich library of UO 2 2+ /Ag + compounds, and the synthetic parameters discussed within reveal a platform for the design of new heterometallic uranyl-containing materials.

anions↗

Structural Complexity and Tuned Thermoelectric Properties of a Polymorph of the Zintl Phase Ca 2 CdSb 2 with a Non-centrosymmetric Monoclinic Structure

The Zintl phase Ca 2 CdSb 2 was found to be dimorphic. Besides the orthorhombic Ca 2 CdSb 2 (-o), here we report on the synthesis, the structural characterization, and the thermoelectric transport properties of its monoclinic form, Ca 2 CdSb 2 (-m), and its Lu-doped variant Ca 2–x Lu x CdSb 2 (x ≈ 0.02). The monoclinic structure exhibits complex structural characteristics and constitutes a new structure type with the non-centrosymmetric space group Cm (Z = 30). The electrical resistivity ρ(T) measured on single crystals of both phases portrays a transition from a semiconductor to a degenerate p-type semiconductor upon doping with Lu and with an attendant change in the Hall carrier concentration nH from 7.15 × 10 18 to 2.30 × 10 19 cm –3 at 300 K. The Seebeck coefficient S(T) of both phases are comparable and indicate a hole-dominated carrier transport mechanism with magnitudes of 133 and 116 μV/K at 600 K for Ca 2 CdSb 2 (-m) and Ca 2–x Lu x CdSb 2 , respectively. The convoluted atomic bonding with an attendant large unit cell volume of ~4365 Å 3 drives a putative low thermal conductivity in these materials resulting in a power factor PF of 1.63 μW/cm K 2 and an estimated thermoelectric figure of merit zT of ~0.5 for Ca 2–x Lu x CdSb 2 at 600 K. Furthermore, differential scanning calorimetry results reveal the stability of these phases up to about 960 K, making them candidates for moderate temperature thermoelectric materials.

36 MATERIALS SCIENCE↗

Unveiling the Structural Basis That Regulates the Energy Transduction Properties within a Family of Triheme Cytochromes from Geobacter sulfurreducens

A family of triheme cytochromes from Geobacter sulfurreducens plays an important role in extracellular electron transfer. In addition to their role in electron transfer pathways, two members of this family (PpcA and PpcD) were also found to be able to couple e(-)/H+ transfer through the redox Bohr effect observed in the physiological pH range, a feature not observed for cytochromes PpcB and PpcE. In attempting to understand the molecular control of the redox Bohr effect in this family of cytochromes, which is highly homologous both in amino acid sequence and structures, it was observed that residue 6 is a conserved leucine in PpcA and PpcD, whereas in the other two characterized members (PpcB and PpcE) the equivalent residue is a phenylalanine. To determine the role of this residue located close to the redox Bohr center, we replaced Leu(6) in PpcA with Phe and determined the redox properties of the mutant, as well as its solution structure in the fully reduced state. In contrast with the native form, the mutant PpcAL6F is not able to couple the e(-)/H+ pathway. We carried out the reverse mutation in PpcB and PpcE (i.e., replacing Phe(6) in these two proteins by leucine) and the mutated proteins showed an increased redox Bohr effect. The results clearly establish the role of residue 6 in the control of the redox Bohr effect in this family of cytochromes, a feature that could enable the rational design of G. sulfurreducens strains that carry mutant cytochromes with an optimal redox Bohr effect that would be suitable for various biotechnological applications.

Dantas, Joana M.↗

Effect of Functional and Electron Correlation on the Structure and Spectroscopy of the Al 2 O 3 (001)–H 2 O Interface

Oxide–water interfaces are ubiquitous, with many applications in industry and the environment, yet there is a great deal of controversy over their properties and microscopic structure. This controversy stems, in part, from the unique H-bond networks formed at different surface terminations and mineral compositions. Density functional theory simulations of these interfaces require an accurate description of both the oxide mineral and water in diverse H-bond environments. Thus, herein we simulate the Al 2 O 3 (001)–H 2 O interface using the PBE, PBE-TS, RPBE, SCAN, and HSE06-TS functionals to determine how calculated interfacial properties depend on the choice of functional. We find that the structure of the first few layers of water at the surface is determined by electron correlation in a way that cannot be approximated using semiemipirical van der Waals corrections. Of the functionals investigated, we find that SCAN yields the most accurate interfacial structure, dynamics, and sum frequency generation spectrum. Furthermore, SCAN leads to a reduction in the order of the 2D H-bond network of water at the alumina surface predicted by GGA functionals, leading to a significant decrease in the anisotropy of the diffusion coefficient at the surface. We emphasize the importance of using a functional which accurately describes electron correlation for more complex oxides, such as transition-metal oxides, where electron correlation may play an even greater role in determining the structure and dynamics of the oxide–water interface.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗