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At least 757 records · Page 42

Computational exploration of single-protein mechanics by steered molecular dynamics

Hair cell mechanotransduction happens in tens of microseconds, involves forces of a few picoNewtons, and is mediated by nanometer-scale molecular conformational changes. As proteins involved in this process become identified and their high resolution structures become available, multiple tools are being used to explore their “single-molecule responses” to force. Optical tweezers and atomic force microscopy offer exquisite force and extension resolution, but cannot reach the high loading rates expected for high frequency auditory stimuli. Molecular dynamics (MD) simulations can reach these fast time scales, and also provide a unique view of the molecular events underlying protein mechanics, but its predictions must be experimentally verified. Thus a combination of simulations and experiments might be appropriate to study the molecular mechanics of hearing. Here I review the basics of MD simulations and the different methods used to apply force and study protein mechanics in silico. Simulations of tip link proteins are used to illustrate the advantages and limitations of this method.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Multidimensional characterization of stochastic dynamical systems based on multiple perturbations and measurements

Generalized nonlinear response theory is presented for stochastic dynamical systems. Experiments in which multiple measurements of dynamical quantities are used along with multiple perturbations of parameters of dynamical systems are described by generalized response functions (GRFs). These constitute a new type of multidimensional measures of stochastic dynamics either in the time or the frequency domains. Closed expressions for GRFs in stochastic dynamical systems are derived and compared with numerical non-equilibrium simulations. Several types of perturbations are considered: impulsive and periodic perturbations of temperature and impulsive perturbations of coordinates. The present approach can be used to study various types of stochastic processes ranging from single-molecule conformational dynamics to chemical kinetics of finite-size reactors such as biocells.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Correlated low-frequency electric and magnetic noise along the auroral field lines

Dynamics Explorer 1 measurements of intense low-frequency electric and magnetic noise observed at low altitudes over the auroral zone are described. The intensity of both the electric and magnetic fields decreases rapidly with increasing frequency. Most of the energy is at frequencies below the O(+) cyclotron frequency, and some evidence is found for a cutoff or change in spectral slope near that frequency. The magnetic to electric field ratio decreases rapidly with increasing radial distance and also decreases with increasing frequency. The polarization of the electric field in a plane perpendicular to the earth's magnetic field is essentially random. The transverse electric and magnetic fields are closely correlated, with the average Poynting flux directed toward the earth. The total electromagnetic power flow associated with the noise is substantial. Two general models are discussed to interpret these observations, one based on static electric and magnetic fields imbedded in the ionosphere and the other based on Alfven waves propagating along the auroral field lines.

Gurnett, D. A.↗

Passive Aeroelastic Tailored Wing Modal Test Using the Fixed Base Correction Method

In modal testing and finite element model correlation, analysts desire modal results using free-free or rigid boundary conditions to ease comparisons of test versus analytical data. It is often expensive both in cost and schedule to build and test with boundary conditions that replicate the free-free or rigid boundaries. Static test fixtures for load testing are often large, heavy, and unyielding, but do not provide adequate boundaries for modal tests because they are dynamically too flexible and often contain natural frequencies within the frequency range of interest of the test article. Dynamic coupling between the test article and test fixture complicates the model updating process because significant effort is required to model the test fixture and boundary conditions in addition to the test article. If there were a way to correct the modal results for fixture coupling, then setups used for other structural testing could be adequate for modal testing. In the case described in this paper, a partial static loads testing setup was used, which allowed significant schedule and cost savings by eliminating a unique setup for a modal test. A fixed base correction technique was investigated during modal testing of a flexible wing cantilevered from part of a static test fixture. The technique was successfully used to measure the wing modes de-coupled from the dynamically active test fixture. The technique is promising for future aircraft applications, but more research is needed.

structural dynamics↗

Photon phase-space dynamics in a plasma wakefield accelerator

Frequency up-shifting of laser light in a beam-driven plasma wakefield has the potential to provide high-intensity sources of short wavelength radiation. Simulations have demonstrated that a laser pulse can undergo large frequency shifts, limited only by the drive beam energy, when the plasma density is tailored to match the accelerating phase of the wake to the group velocity of the pulse. Here, we study the dynamical evolution of photons in the 1D1P phase-space vicinity of the plasma wake-phase matching condition. Numerical calculations using a photon kinetic model are validated by direct comparison with 1D and quasi-3D particle-in-cell simulations. These calculations form the basis of a linear theory of the photon dynamics which reveals several important results, including scalings for the properties of the witness pulse and a self-similar solution for the photon phase-space dynamics. One prediction of the analytic theory is that the pulse can be compressed indefinitely, though the amount of compression would ultimately be limited by practical constraints. These results suggest that photon acceleration can provide a novel source of sub-femtosecond, short wavelength radiation.

XUV generation↗

Precise ROCOF estimation algorithm for low inertia power grids

The precise estimation of Rate Of Change Of Frequencies (ROCOFs) in a generation trip event can be helpful on power system inertia estimation, fast system response, and accurate event capturing. However, the ROCOF estimations from the existing Synchronized Measurement Devices (SMDs) are usually simply calculated by the finite difference between two adjacent frequency measurement points. The ineluctable noises, disturbances, and spikes from real-world frequency measurements can bring large dynamics to the ROCOF estimation and thus can result in an inaccurate estimation of the initial ROCOF. This issue becomes more serious when the target power grid has low inertia, and a large amount of distributed energy sources are deployed. To address this issue, a precise ROCOF estimation algorithm is designed based on least square method with flexible window size. In addition, a median filter is also designed and applied on the frequency measurements before using the proposed algorithm. The window size and thresholds in the proposed algorithm are determined with historical event data analysis. The proposed algorithm is deployed in a low cost, flexible, and distribution level universal grid analyzer (UGA) platform. In conclusion, multiple experiments are conducted in both a laboratory and the Hawaiian Islands to verify the effectiveness of the proposed algorithm.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Radially scanning magnetic probes to study local helicity injection dynamics

Two new magnetic probes have been deployed on the Pegasus spherical tokamak to study the dynamics of local helicity injection non-solenoidal plasma start-up and current drive. The magnetic radial array probe consists of 15 pickup coils (~5 × 8 mm each) that measure B z (R) over a 15 cm linear extent. The coils consist of traces embedded in a printed circuit board. Three coil designs are utilized to balance frequency response and coil sensitivity. Helmholtz coil measurements are used to measure coil and full assembly bandwidths (~2 MHz and ~200 kHz, respectively) and sensitivities (0.18/0.35/0.96 mV T -1 s). The magnetic radial scanning probe is an array of Hall effect sensors that measure field strength ( |B| 177 mT) and direction at 8 spatial points (ΔR = 1.5 cm), supporting the studies of equilibrium field structure and low-frequency (≤5 kHz) current dynamics. It uses commercial surface-mount Hall effect sensors with chip-integrated amplifiers and compensators that are mounted in a 3-D printed frame. Helmholtz coil measurements indicate negligible cross-field gain nonlinearity and provide absolute calibration of the diagnostic. Both probes are constructed as an electrostatically shielded insertable air-side assembly that mounts within a radially translatable ultrahigh vacuum assembly from an existing probe.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Apparatus and Method to Enable Precision and Fast Laser Frequency Tuning

An apparatus and method is provided to enable precision and fast laser frequency tuning. For instance, a fast tunable slave laser may be dynamically offset-locked to a reference laser line using an optical phase-locked loop. The slave laser is heterodyned against a reference laser line to generate a beatnote that is subsequently frequency divided. The phase difference between the divided beatnote and a reference signal may be detected to generate an error signal proportional to the phase difference. The error signal is converted into appropriate feedback signals to phase lock the divided beatnote to the reference signal. The slave laser frequency target may be rapidly changed based on a combination of a dynamically changing frequency of the reference signal, the frequency dividing factor, and an effective polarity of the error signal. Feed-forward signals may be generated to accelerate the slave laser frequency switching through laser tuning ports.

Chen, Jeffrey R.↗

Beam Shaping and Oscillation for Metals Additive Manufacturing

Additive Manufacturing (AM) is pivotal for next-generation industrial manufacturing but is hampered by process control challenges leading to unwanted defects and sub-optimal material properties. Our research builds on prior work that utilized beam oscillation techniques to mitigate these issues (Wu et al., 2023). We focus on investigating the influence of beam oscillation frequency on melt pool dynamics, utilizing in-situ synchrotron material characterization from the ESRF (Chen et al., 2026). Preliminary findings indicated that beam oscillation results in unique fluid flow patterns and enhanced melting stability. These findings suggested the possibility of optimized AM process control, including minimized defects and tailored thermal histories. We proposed further research to explore the effects of beam oscillation frequencies comprehensively, using the in-situ characterization capabilities at the ESRF. The goal was to quantify this relationship, offering a pathway to more precise AM process control and optimization. Our research is expected to offer new scientific insights into the fluid mechanics and thermal behaviour in AM, contributing to its broader applicability and commercial viability.

36 MATERIALS SCIENCE↗

Dataset_for_Molecular_Motion_Below_the_Glass_Transition_A_Solid-State_NMR_Study_of_Siloxane_Polymer_Dynamics Study

This dataset contains solid-state 1H and 13C NMR relaxometry data, differential scanning calorimetry (DSC) data, and size exclusion chromatography (SEC/GPC) data supporting the study of sub-glass-transition (sub-Tg) molecular dynamics in a composition- and sequence-controlled series of diphenyl-substituted polysiloxanes (PDMS, 14Ph, 33Ph, 50Ph, 67Ph, and 100Ph; 0–100% diphenylsiloxane content by mole).All solid-state NMR data were acquired on a 200 MHz Bruker Avance III HD spectrometer using a static 7 mm HX probe or a 4 mm HX probe under 4 kHz magic-angle spinning. Raw Bruker TopSpin experiment folders are included for: (1) variable-temperature 1H lineshape measurements used to determine linewidth (FWHM) as a function of temperature across the glass transition; (2) 1H T1 (saturation recovery with solid-echo detection), probing nanosecond-scale dynamics near the 1H Larmor frequency; (3) 1H T1rho (direct spin-lock, 62.5 kHz), probing microsecond-scale segmental dynamics; (4) 13C-detected Lee–Goldburg cross-polarization 1H T1rho (LGCPH T1rho) for 33Ph and 50Ph, resolving aromatic and aliphatic proton environments; and (5) 13C T1 relaxation for 33Ph and 50Ph. Differential scanning calorimetry data (TA Instruments DSC 25, −150 to +120 °C, up to +300 °C for 100Ph, 10 °C/min) are included for all six compositions and support the glass-transition temperatures in Table 1 and Figure 1. Size exclusion chromatography data (Agilent 1200 Series, PL-Gel 300 mixed-C column, THF mobile phase, polystyrene calibration standards) are included for the three synthesized copolymers (33Ph, 50Ph, 67Ph) and support the number-average molecular weights in Table 1. Processed data include per-composition relaxation-time summaries (Excel), curve-fitting and Bloembergen-Purcell-Pound (BPP) model analysis notebooks (Jupyter/Python), and Igor Pro (.pxp) master files used to generate the manuscript's figures.

Bloembergen-Purcell-Pound theory↗

A modal reduction method for use with nonlinear simulations of flexible multibody spacecraft

This paper presents a modal truncation method that can be used to prepare the structural flexibility data required as input to flexible, multibody spacecraft simulation programs. The method allows one to truncate the structural models of each flexible body in the system such that the assembled system is free of undesired high frequency system modes. This truncation method enables reasonable simulation costs to be incurred while maintaining dynamic simulation fidelity in the frequency range of interest. A simple one-dimensional example is presented which provides a physical interpretation of the method's workings. In addition, results are presented from the application of the method to a complex spacecraft.

Macala, G. A.↗

CORRELATED ERRORS IN EARTH POINTING MISSIONS

Two different Earth-pointing missions dealing with attitude control and dynamics changes illustrate concerns with correlated error sources and coupled effects that can occur. On the OrbView-2 (OV-2) spacecraft, the assumption of a nearly-inertially-fixed momentum axis was called into question when a residual dipole bias apparently changed magnitude. The possibility that alignment adjustments and/or sensor calibration errors may compensate for actual motions of the spacecraft is discussed, and uncertainties in the dynamics are considered. Particular consideration is given to basic orbit frequency and twice orbit frequency effects and their high correlation over the short science observation data span. On the Tropical Rainfall Measuring Mission (TRMM) spacecraft, the switch to a contingency Kalman filter control mode created changes in the pointing error patterns. Results from independent checks on the TRMM attitude using science instrument data are reported, and bias shifts and error correlations are discussed. Various orbit frequency effects are common with the flight geometry for Earth pointing instruments. In both dual-spin momentum stabilized spacecraft (like OV-2) and three axis stabilized spacecraft with gyros (like TRMM under Kalman filter control), changes in the initial attitude state propagate into orbit frequency variations in attitude and some sensor measurements. At the same time, orbit frequency measurement effects can arise from dynamics assumptions, environment variations, attitude sensor calibrations, or ephemeris errors. Also, constant environment torques for dual spin spacecraft have similar effects to gyro biases on three axis stabilized spacecraft, effectively shifting the one-revolution-per-orbit (1-RPO) body rotation axis. Highly correlated effects can create a risk for estimation errors particularly when a mission switches an operating mode or changes its normal flight environment. Some error effects will not be obvious from attitude sensor measurement residuals, so some independent checks using imaging sensors are essential and derived science instrument attitude measurements can prove quite valuable in assessing the attitude accuracy.

Steve Bilanow↗

WEC3: Wave Energy Converter Code Comparison Project: Preprint

This paper describes the recently launched Wave Energy Converter Code Comparison (WEC3) project and present preliminary results from this effort. The objectives of WEC3 are to verify and validate numerical modelling tools that have been developed specifically to simulate wave energy conversion devices and to inform the upcoming IEA OES Annex VI Ocean Energy Modelling Verification and Validation project. WEC3 is divided into two phases. Phase 1 consists of a code-to-code verification and Phase II entails code-to-experiment validation. WEC3 focuses on mid-fidelity codes that simulate WECs using time-domain multibody dynamics methods to model device motions and hydrodynamic coefficients to model hydrodynamic forces. Consequently, high-fidelity numerical modelling tools, such as Navier-Stokes computational fluid dynamics simulation, and simple frequency domain modelling tools were not included in the WEC3 project.

16 TIDAL AND WAVE POWER↗

Boltzmann-conserving classical dynamics in quantum time-correlation functions: “Matsubara dynamics”

We show that a single change in the derivation of the linearized semiclassical-initial value representation (LSC-IVR or “classical Wigner approximation”) results in a classical dynamics which conserves the quantum Boltzmann distribution. We rederive the (standard) LSC-IVR approach by writing the (exact) quantum time-correlation function in terms of the normal modes of a free ring-polymer (i.e., a discrete imaginary-time Feynman path), taking the limit that the number of polymer beads N → ∞, such that the lowest normal-mode frequencies take their “Matsubara” values. The change we propose is to truncate the quantum Liouvillian, not explicitly in powers of ħ{sup 2} at ħ{sup 0} (which gives back the standard LSC-IVR approximation), but in the normal-mode derivatives corresponding to the lowest Matsubara frequencies. The resulting “Matsubara” dynamics is inherently classical (since all terms O(ħ{sup 2}) disappear from the Matsubara Liouvillian in the limit N → ∞) and conserves the quantum Boltzmann distribution because the Matsubara Hamiltonian is symmetric with respect to imaginary-time translation. Numerical tests show that the Matsubara approximation to the quantum time-correlation function converges with respect to the number of modes and gives better agreement than LSC-IVR with the exact quantum result. Matsubara dynamics is too computationally expensive to be applied to complex systems, but its further approximation may lead to practical methods.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Automated Uas Measurements of Reflectance and Solar Induced Florescence (SIF) for Assessment Of the Dinamics in Photosynthetic Function, Application for Maze (Zea Mays L.) in Greenbelt, Maryland, Us

For accurate assessment of vegetation function there is a strong need for advancement in the remote sensing methods and instruments, to enable monitoring of the parameters governing photosynthesis at the temporal frequency relevant to their dynamics and at a spatial scale that allows practical assessment and management. Currently, no single sensor can provide data at the desired high temporal, spectral and spatial resolutions. Our field measurements obtained using the integrated UAS Piccolo system during the summers of2017 and 2018 demonstrate that science quality reflectance and solar induced fluorescence (SIF) data can be retrieved with high temporal frequency using small Unmanned Aerial Systems (UAS). The implemented approach facilitates data comparisons through space and time, and the integration with other spectral satellite and airborne data. This investigation contributes for bridging the gap in Earth observation between field and airborne measurements by implementing autonomous methods for obtaining high temporal frequency spectroscopy measurements from an Unmanned Aerial Systems (UAS) at various illumination conditions. An advancement in the Intelligent Payload Module (IPM) facilitated the implementation of an optimization workflow to collect spectral data for characterizing vegetation reflectance and solar induced fluorescence (SIF).

Petya Campbell↗

Design and Study of a LOX/GH2 Throttleable Swirl Injector for Rocket Applications

A LOX/GH2 swirl injector was designed for a 10:1 propellant throttling range. To accomplish this, a dual LOX manifold was used feeding a single common vortex chamber of the swirl element. Hot-fire experiments were conducted for rocket chamber pressures from 80 to 800 psia at a mixture ratio of nominally 6.0 using steady flow, single-point-per-firing cases as well as dynamic throttling conditions. Low frequency (mean) and high frequency (fluctuating) pressure transducer data, flow meter measurements, and Raman spectroscopy images for mixing information were obtained. The injector design, experimental setup, low frequency pressure data, and injector performance analysis are presented. C* efficiency was very high (approx. 100%) at the middle of the throttleable range with somewhat lower performance at the high and low ends. From the analysis of discreet steady state operating conditions, injector pressure drop was slightly higher than predicted with an inviscid analysis, but otherwise agreed well across the design throttling range. Dynamic throttling of this injector was attempted with marginal success due to the immaturity of the throttling control system. Although the targeted mixture ratio of 6.0 was not maintained throughout the dynamic throttling profile, the injector behaved well over the wide range of conditions.

Greene, Christopher↗

EXPERIMENTAL STUDIES OF NONLINEAR INTEGRABLE OPTICS

State-of-the-art accelerators at energy and intensity frontiers require increasingly bright and powerful particle beams. In conventional linear lattices, intense beams suffer from collective instabilities, resulting in beam losses and maximum beam intensity limits. This thesis presents experimental studies of a novel lattice design concept, the nonlinear integrable optics (NIO), aimed at enhancing beam stability limits with little to no beam dynamics degradation. Single-particle beam dynamics measurements of two NIO devices, the quasi-integrable octupole system and the fully integrable Danilov-Nagaitsev system, were carried out at the purpose-built Integrable Optics Test Accelerator (IOTA) at Fermilab. Their simulation, hardware design, and commissioning process are presented. Extensive model and analysis algorithm development and benchmarking is described. Electron beam data from two scientific runs is analyzed, yielding frequency and phase space dynamics consisten t with m odels. These results demonstrate viability and advantages of the NIO design, providing the groundwork for proton studies in the strong space-charge regime and future integrable accelerators.

Kuklev, Nikita↗

Adjustable ferromagnetic resonance frequency in CoO/CoFeB system

Static and dynamic properties of (CoO/CoFeB){sub n} multilayers have been investigated. An anisotropy field enhancement was evidenced when the CoO layer was deposited under the CoFeB layer. Tuning the relative CoFeB and CoO layers thicknesses, high ferromagnetic resonance frequencies up to 4 GHz were achieved. The coupling effect between the CoO and CoFeB layers was induced by a dipolar coupling due to the anisotropic roughness topology of the CoO layer. This anisotropic roughness was induced by the deposition geometry and evidenced by atomic force microscopy. The strength of the dipolar interfacial coupling was calculated thanks to Schlömann's model. Multilayer stacks were fabricated and the magnetic properties observed for the trilayers could be maintained.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗